Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 119.99811 * 2 1 4 4 N 1.34773 * 120.00089 * 179.97438 * 2 1 3 5 5 C 1.46491 * 120.00075 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47563 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47128 * 299.99869 * 5 4 2 8 8 C 1.52992 * 109.47418 * 295.00257 * 7 5 4 9 9 C 1.53004 * 109.47418 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.46943 * 64.99487 * 9 8 7 11 11 C 1.52999 * 109.47120 * 185.00152 * 9 8 7 12 12 C 1.50695 * 109.47355 * 60.00227 * 5 4 2 13 13 O 1.20830 * 119.99695 * 339.99728 * 12 5 4 14 14 O 1.34233 * 120.00443 * 160.00167 * 12 5 4 15 15 C 1.45203 * 117.00216 * 179.97438 * 14 12 5 16 16 C 1.53041 * 109.45873 * 270.06861 * 15 14 12 17 17 C 1.53190 * 109.31249 * 178.61720 * 16 15 14 18 18 N 1.46919 * 108.77563 * 54.62884 * 17 16 15 19 19 C 1.36946 * 120.62791 * 126.41749 * 18 17 16 20 20 H 1.08001 * 119.99718 * 331.82372 * 19 18 17 21 21 C 1.38810 * 120.00117 * 151.82357 * 19 18 17 22 22 N 1.31622 * 119.99791 * 343.08068 * 21 19 18 23 23 Si 1.86800 * 120.00151 * 163.07926 * 21 19 18 24 24 H 1.48499 * 109.47015 * 60.00031 * 23 21 19 25 25 H 1.48501 * 109.47145 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47060 * 299.99871 * 23 21 19 27 27 C 1.46921 * 118.74373 * 306.39445 * 18 17 16 28 28 C 1.53042 * 109.45971 * 149.99913 * 15 14 12 29 29 H 1.08999 * 109.47525 * 239.99712 * 1 2 3 30 30 H 1.08997 * 109.47138 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46983 * 120.00477 * 1 2 3 32 32 H 0.97002 * 120.00185 * 0.02562 * 4 2 1 33 33 H 1.08999 * 109.46644 * 55.00263 * 7 5 4 34 34 H 1.08998 * 109.47108 * 174.99707 * 7 5 4 35 35 H 1.09008 * 109.46980 * 299.99649 * 8 7 5 36 36 H 1.08998 * 109.47430 * 59.99647 * 8 7 5 37 37 H 1.09002 * 109.46861 * 304.99972 * 9 8 7 38 38 H 1.08997 * 109.46661 * 180.02562 * 10 9 8 39 39 H 1.08994 * 109.47379 * 300.00423 * 10 9 8 40 40 H 1.09002 * 109.46946 * 60.00537 * 10 9 8 41 41 H 1.08998 * 109.47516 * 59.99767 * 11 9 8 42 42 H 1.09004 * 109.46828 * 179.97438 * 11 9 8 43 43 H 1.09000 * 109.46963 * 299.99145 * 11 9 8 44 44 H 1.08996 * 109.44500 * 30.03459 * 15 14 12 45 45 H 1.09000 * 109.49517 * 298.56255 * 16 15 14 46 46 H 1.08996 * 109.49647 * 58.66076 * 16 15 14 47 47 H 1.08998 * 109.58321 * 294.84560 * 17 16 15 48 48 H 1.08995 * 109.70564 * 174.49135 * 17 16 15 49 49 H 0.96999 * 119.99934 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.58471 * 293.82056 * 27 18 17 51 51 H 1.09004 * 109.70588 * 173.46375 * 27 18 17 52 52 H 1.09005 * 109.49601 * 301.33981 * 28 15 14 53 53 H 1.09001 * 109.49579 * 61.43129 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 1 4.0092 -2.1948 0.0010 7 6 4.1563 -0.4462 -1.2482 8 6 3.7520 -1.2365 -2.4942 9 6 4.2620 -0.5153 -3.7435 10 6 5.7920 -0.5147 -3.7431 11 6 3.7523 -1.2368 -4.9927 12 6 4.1477 -0.4566 1.2316 13 8 3.4218 0.3022 1.8293 14 8 5.4012 -0.6664 1.6636 15 6 5.8169 0.0522 2.8548 16 6 6.4270 1.3968 2.4522 17 6 6.8328 2.1668 3.7128 18 7 7.7206 1.3187 4.5197 19 6 8.9465 1.7769 4.9230 20 1 9.4694 2.5130 4.3305 21 6 9.5169 1.2953 6.0932 22 7 8.7716 0.6699 6.9797 23 14 11.3422 1.5347 6.4099 24 1 11.6550 2.9863 6.4294 25 1 11.7005 0.9331 7.7195 26 1 12.1223 0.8746 5.3325 27 6 7.2680 -0.0302 4.8863 28 6 6.8574 -0.7756 3.6125 29 1 -0.3634 -0.5139 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6959 -2.0072 0.0005 33 1 3.7217 0.5523 -1.2944 34 1 5.2426 -0.3679 -1.2041 35 1 4.1867 -2.2351 -2.4479 36 1 2.6658 -1.3148 -2.5383 37 1 3.8983 0.5123 -3.7436 38 1 6.1552 -0.0004 -4.6329 39 1 6.1550 -0.0007 -2.8532 40 1 6.1557 -1.5422 -3.7430 41 1 2.6624 -1.2372 -4.9929 42 1 4.1153 -0.7226 -5.8827 43 1 4.1161 -2.2643 -4.9926 44 1 4.9521 0.2232 3.4958 45 1 7.3065 1.2259 1.8314 46 1 5.6930 1.9763 1.8923 47 1 5.9429 2.4175 4.2901 48 1 7.3561 3.0810 3.4326 49 1 9.1701 0.3336 7.7976 50 1 6.4136 0.0414 5.5593 51 1 8.0777 -0.5681 5.3795 52 1 6.4297 -1.7423 3.8785 53 1 7.7329 -0.9261 2.9808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850897040.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -144.467163 kcal Electronic energy + Delta-G solvation = -31300.057426 eV Core-core repulsion = 27170.830601 eV Total energy + Delta-G solvation = -4129.226825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.02847 -40.53358 -38.99733 -37.96385 -37.23100 -35.79196 -34.61418 -32.81468 -32.14280 -31.50019 -30.20431 -28.14847 -27.97637 -26.90657 -24.37758 -23.97842 -23.45871 -22.48603 -21.11797 -20.93653 -20.70182 -18.95349 -18.87695 -17.99847 -17.72735 -17.03993 -16.90208 -16.44430 -16.22195 -15.82779 -15.62641 -15.45791 -15.12762 -14.97433 -14.83817 -14.60316 -14.51699 -14.28671 -14.04623 -13.73909 -13.33721 -13.25762 -13.15003 -13.08886 -12.99407 -12.92229 -12.66196 -12.59966 -12.56356 -12.50226 -12.18961 -12.16821 -12.01161 -11.91446 -11.78102 -11.52712 -11.47454 -11.43211 -11.35225 -11.08998 -10.64069 -10.58067 -10.16065 -8.79279 -7.92698 -5.39445 1.19134 1.41009 1.47625 1.50158 1.57127 1.93461 2.31457 2.49141 3.23339 3.47102 3.57999 3.71057 3.76080 3.82487 3.88083 4.00671 4.06584 4.10997 4.13450 4.27899 4.31569 4.46874 4.50246 4.53647 4.63888 4.69694 4.69925 4.80313 4.82322 4.84075 4.85784 4.90264 4.91014 4.99447 5.00995 5.07689 5.09965 5.14662 5.19388 5.25781 5.35939 5.38800 5.39536 5.50656 5.52632 5.56520 5.60044 5.66772 6.33448 6.60611 6.77550 7.08284 7.40604 7.75686 8.29796 9.15151 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.002579 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.613025 B =10854.753372 C =12003.986479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.503 3.497 3 O -0.571 6.571 4 N -0.708 5.708 5 C 0.168 3.832 6 H 0.160 0.840 7 C -0.128 4.128 8 C -0.096 4.096 9 C -0.099 4.099 10 C -0.151 4.151 11 C -0.142 4.142 12 C 0.434 3.566 13 O -0.519 6.519 14 O -0.353 6.353 15 C 0.109 3.891 16 C -0.131 4.131 17 C 0.148 3.852 18 N -0.609 5.609 19 C -0.270 4.270 20 H 0.068 0.932 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.973 3.027 24 H -0.276 1.276 25 H -0.292 1.292 26 H -0.275 1.275 27 C 0.180 3.820 28 C -0.118 4.118 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.428 0.572 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.009 0.991 48 H 0.064 0.936 49 H 0.253 0.747 50 H -0.002 1.002 51 H 0.072 0.928 52 H 0.080 0.920 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.629 -11.519 -23.237 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.292 3.708 3 O -0.448 6.448 4 N -0.365 5.365 5 C 0.060 3.940 6 H 0.178 0.822 7 C -0.166 4.166 8 C -0.133 4.133 9 C -0.118 4.118 10 C -0.209 4.209 11 C -0.199 4.199 12 C 0.276 3.724 13 O -0.406 6.406 14 O -0.270 6.270 15 C 0.054 3.946 16 C -0.170 4.170 17 C 0.022 3.978 18 N -0.332 5.332 19 C -0.400 4.400 20 H 0.086 0.914 21 C -0.243 4.243 22 N -0.581 5.581 23 Si 0.800 3.200 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.201 1.201 27 C 0.054 3.946 28 C -0.158 4.158 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.267 0.733 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.027 0.973 48 H 0.083 0.917 49 H 0.062 0.938 50 H 0.016 0.984 51 H 0.090 0.910 52 H 0.099 0.901 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.364 -10.571 -22.865 29.506 hybrid contribution 0.644 0.435 1.067 1.321 sum -14.720 -10.135 -21.797 28.187 Atomic orbital electron populations 1.21899 0.88419 1.05607 1.06360 1.21553 0.92168 0.83140 0.73911 1.90728 1.71701 1.33379 1.49026 1.45686 1.04490 1.10007 1.76269 1.20647 0.82307 1.02478 0.88563 0.82245 1.21948 1.01662 1.00286 0.92752 1.21531 1.01501 0.99080 0.91211 1.21103 0.95937 0.99238 0.95476 1.21912 0.95313 1.02341 1.01303 1.21791 1.01066 1.00680 0.96373 1.25035 0.79980 0.80581 0.86829 1.90689 1.57644 1.35065 1.57225 1.86532 1.31427 1.64743 1.44278 1.22516 0.96429 0.91911 0.83700 1.22225 1.00313 0.95422 0.99021 1.20905 0.92779 0.93618 0.90456 1.44356 1.16377 1.11605 1.60902 1.19496 0.93985 1.23388 1.03121 0.91388 1.25866 1.02691 1.01110 0.94637 1.70169 1.35631 1.43357 1.08916 0.85266 0.79985 0.77992 0.76732 1.20204 1.21771 1.20069 1.20603 0.97132 0.85183 0.91656 1.22164 0.97503 0.98561 0.97524 0.87880 0.90235 0.86111 0.73310 0.92263 0.90465 0.89597 0.90976 0.93044 0.92808 0.93638 0.91576 0.92340 0.92835 0.91724 0.92523 0.90953 0.92458 0.97350 0.91736 0.93783 0.98375 0.91015 0.90125 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 10.32 71.24 0.74 -1.22 16 2 C 0.50 10.93 6.70 87.66 0.59 11.52 16 3 O -0.57 -19.36 12.95 19.42 0.25 -19.11 16 4 N -0.71 -10.75 4.65 -446.12 -2.07 -12.83 16 5 C 0.17 3.20 3.12 44.25 0.14 3.34 16 6 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 7 C -0.13 -2.50 4.30 30.59 0.13 -2.37 16 8 C -0.10 -1.18 4.57 30.59 0.14 -1.04 16 9 C -0.10 -1.37 2.92 -10.79 -0.03 -1.40 16 10 C -0.15 -2.21 8.95 71.98 0.64 -1.56 16 11 C -0.14 -1.46 9.19 71.98 0.66 -0.80 16 12 C 0.43 13.56 6.92 71.23 0.49 14.05 16 13 O -0.52 -20.48 12.90 29.39 0.38 -20.10 16 14 O -0.35 -11.74 9.88 -51.45 -0.51 -12.25 16 15 C 0.11 4.26 2.42 30.62 0.07 4.33 16 16 C -0.13 -5.26 5.72 30.67 0.18 -5.09 16 17 C 0.15 6.87 6.52 86.36 0.56 7.43 16 18 N -0.61 -32.16 2.99 -699.13 -2.09 -34.25 16 19 C -0.27 -15.24 9.58 84.03 0.81 -14.43 16 20 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 21 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 22 N -0.94 -55.73 11.19 21.65 0.24 -55.48 16 23 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.18 8.99 5.30 86.36 0.46 9.45 16 28 C -0.12 -4.70 5.74 30.67 0.18 -4.53 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 31 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.43 2.55 8.83 -92.71 -0.82 1.73 16 33 H 0.06 1.61 6.04 -2.39 -0.01 1.59 16 34 H 0.08 1.61 6.57 -2.39 -0.02 1.59 16 35 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.07 0.78 7.75 -2.39 -0.02 0.76 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.04 0.79 6.57 -2.39 -0.02 0.78 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 2.44 7.15 -2.39 -0.02 2.43 16 45 H 0.07 2.84 8.14 -2.39 -0.02 2.83 16 46 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.06 2.88 7.93 -2.39 -0.02 2.86 16 49 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 50 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 51 H 0.07 3.93 6.07 -2.38 -0.01 3.91 16 52 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 53 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -78.98 414.15 4.46 -74.52 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.06 Total: 17.01 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 6.17 Total: 15.41 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.92 Total: -102.56 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: 0.12 Total: -51.46 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -78.98 4.46 -74.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850897040.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.944 kcal (2) G-P(sol) polarization free energy of solvation -78.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds