Wall clock time and date at job start Sat Apr 11 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99608 * 2 1 4 4 O 1.20820 * 120.00468 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99561 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.46981 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47145 * 180.02562 * 6 5 3 8 8 C 1.36945 * 120.00332 * 265.89033 * 7 6 5 9 9 H 1.07993 * 120.00359 * 146.22157 * 8 7 6 10 10 C 1.38816 * 119.99542 * 326.21878 * 8 7 6 11 11 N 1.31618 * 120.00096 * 337.67896 * 10 8 7 12 12 Si 1.86795 * 119.99674 * 157.67444 * 10 8 7 13 13 H 1.48500 * 109.47131 * 90.00174 * 12 10 8 14 14 H 1.48503 * 109.47060 * 210.00115 * 12 10 8 15 15 H 1.48498 * 109.47172 * 329.99994 * 12 10 8 16 16 C 1.46496 * 120.00064 * 85.88626 * 7 6 5 17 17 H 1.09005 * 109.40236 * 359.82644 * 16 7 6 18 18 C 1.53070 * 109.40453 * 119.57500 * 16 7 6 19 19 C 1.53345 * 108.42959 * 169.03221 * 18 16 7 20 20 C 1.53103 * 108.52604 * 292.30767 * 19 18 16 21 21 N 1.45750 * 110.38524 * 51.11463 * 20 19 18 22 22 C 1.46508 * 117.94857 * 160.74413 * 21 20 19 23 23 C 1.52999 * 109.47073 * 269.73857 * 22 21 20 24 24 C 1.53007 * 109.47006 * 59.99523 * 23 22 21 25 25 C 1.52999 * 109.47299 * 299.99640 * 23 22 21 26 26 C 1.53002 * 109.47114 * 179.97438 * 23 22 21 27 27 C 1.33350 * 124.11101 * 340.46284 * 21 20 19 28 28 O 1.21281 * 118.25412 * 182.48041 * 27 21 20 29 29 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46942 * 300.00255 * 1 2 3 31 31 H 1.09000 * 109.46969 * 60.00133 * 1 2 3 32 32 H 1.09007 * 109.46806 * 60.00731 * 5 3 2 33 33 H 1.08993 * 109.47480 * 300.00691 * 5 3 2 34 34 H 1.08999 * 109.47259 * 60.00757 * 6 5 3 35 35 H 1.09002 * 109.47568 * 300.00463 * 6 5 3 36 36 H 0.97000 * 120.00347 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.66897 * 288.76247 * 18 16 7 38 38 H 1.08997 * 109.67337 * 49.25631 * 18 16 7 39 39 H 1.08997 * 109.60309 * 52.22213 * 19 18 16 40 40 H 1.08996 * 109.60202 * 172.70990 * 19 18 16 41 41 H 1.08996 * 109.49718 * 290.74190 * 20 19 18 42 42 H 1.09006 * 109.20517 * 171.30161 * 20 19 18 43 43 H 1.08998 * 109.47009 * 149.73258 * 22 21 20 44 44 H 1.09003 * 109.46668 * 29.73514 * 22 21 20 45 45 H 1.09001 * 109.47343 * 299.99864 * 24 23 22 46 46 H 1.09000 * 109.47002 * 179.97438 * 24 23 22 47 47 H 1.08998 * 109.46964 * 60.00626 * 24 23 22 48 48 H 1.09000 * 109.47234 * 180.02562 * 25 23 22 49 49 H 1.08998 * 109.46895 * 300.00667 * 25 23 22 50 50 H 1.09000 * 109.47068 * 59.99538 * 25 23 22 51 51 H 1.08994 * 109.47311 * 300.00022 * 26 23 22 52 52 H 1.09004 * 109.46432 * 60.00124 * 26 23 22 53 53 H 1.09000 * 109.47182 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 -0.0002 8 6 6.1425 2.9401 1.1826 9 1 7.1113 2.4773 1.2988 10 6 5.5859 3.6582 2.2321 11 7 4.6637 4.5661 1.9923 12 14 6.1456 3.3356 3.9848 13 1 7.2895 4.2246 4.3107 14 1 5.0249 3.6079 4.9204 15 1 6.5672 1.9178 4.1168 16 6 6.1993 2.7656 -1.2656 17 1 5.4943 2.6656 -2.0909 18 6 7.0043 4.0558 -1.4403 19 6 7.9705 3.8689 -2.6163 20 6 9.0221 2.8286 -2.2212 21 7 8.3785 1.6255 -1.7088 22 6 9.1592 0.3859 -1.6855 23 6 8.9615 -0.3662 -3.0031 24 6 9.4307 0.5105 -4.1661 25 6 7.4792 -0.7004 -3.1822 26 6 9.7773 -1.6603 -2.9790 27 6 7.1254 1.5832 -1.2548 28 8 6.7110 0.5339 -0.8097 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9564 0.7807 -0.8893 33 1 3.9558 0.7809 0.8907 34 1 3.6101 3.2368 0.8894 35 1 3.6107 3.2357 -0.8906 36 1 4.2750 5.0681 2.7256 37 1 6.3280 4.8847 -1.6492 38 1 7.5680 4.2626 -0.5306 39 1 7.4195 3.5234 -3.4909 40 1 8.4610 4.8161 -2.8406 41 1 9.6738 3.2438 -1.4526 42 1 9.6197 2.5727 -3.0962 43 1 8.8249 -0.2384 -0.8569 44 1 10.2152 0.6241 -1.5580 45 1 8.8498 1.4326 -4.1834 46 1 9.2903 -0.0255 -5.1047 47 1 10.4867 0.7485 -4.0386 48 1 7.3384 -1.2366 -4.1207 49 1 7.1449 -1.3248 -2.3537 50 1 6.8983 0.2218 -3.1994 51 1 10.8332 -1.4219 -2.8517 52 1 9.4432 -2.2849 -2.1505 53 1 9.6368 -2.1959 -3.9179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879473962.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:58 Heat of formation + Delta-G solvation = -122.119998 kcal Electronic energy + Delta-G solvation = -32716.423719 eV Core-core repulsion = 28588.165939 eV Total energy + Delta-G solvation = -4128.257779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68041 -41.40367 -38.56862 -37.65116 -37.28563 -36.61810 -33.93041 -33.33014 -31.73405 -29.48508 -28.54867 -28.13256 -28.02683 -27.35060 -26.47025 -24.90891 -22.98403 -22.86965 -21.49139 -20.11511 -19.45328 -18.71477 -18.27260 -17.63546 -17.49898 -17.28997 -17.15086 -17.04120 -16.36565 -15.70152 -15.58882 -15.14971 -15.13344 -14.82006 -14.61532 -14.39221 -14.18650 -14.05716 -13.90514 -13.75761 -13.56455 -13.18758 -13.09856 -12.96504 -12.91300 -12.82373 -12.59036 -12.47999 -12.43882 -12.33373 -12.19147 -12.02366 -11.89728 -11.82230 -11.73110 -11.63245 -11.54160 -11.51098 -11.48328 -11.42082 -10.61654 -10.24217 -9.35033 -8.65612 -7.87850 -5.43326 1.18834 1.39418 1.45077 1.53676 1.78514 1.98635 2.30881 2.49635 3.22739 3.55196 3.85173 3.92251 3.98209 4.02071 4.09205 4.11075 4.16799 4.26032 4.29880 4.31042 4.34378 4.49351 4.51292 4.57033 4.66472 4.67943 4.73806 4.76936 4.79691 4.84913 4.87786 4.96795 4.98781 5.04146 5.12076 5.13568 5.15515 5.19936 5.24680 5.30533 5.36243 5.37931 5.51524 5.57527 5.59550 5.65531 5.78600 5.84255 6.40197 6.75113 6.76712 7.08819 7.56346 7.77194 8.28221 9.10467 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.004574 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.876523 B = 6120.414385 C = 7763.301251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.469 3.531 4 O -0.536 6.536 5 C -0.113 4.113 6 C 0.166 3.834 7 N -0.566 5.566 8 C -0.245 4.245 9 H 0.044 0.956 10 C -0.029 4.029 11 N -0.906 5.906 12 Si 0.945 3.055 13 H -0.278 1.278 14 H -0.291 1.291 15 H -0.282 1.282 16 C 0.155 3.845 17 H 0.082 0.918 18 C -0.118 4.118 19 C -0.122 4.122 20 C 0.107 3.893 21 N -0.601 5.601 22 C 0.117 3.883 23 C -0.078 4.078 24 C -0.139 4.139 25 C -0.123 4.123 26 C -0.134 4.134 27 C 0.508 3.492 28 O -0.573 6.573 29 H 0.135 0.865 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.030 0.970 36 H 0.252 0.748 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.034 0.966 50 H 0.031 0.969 51 H 0.070 0.930 52 H 0.043 0.957 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 -7.624 -13.729 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.313 3.687 4 O -0.426 6.426 5 C -0.153 4.153 6 C 0.039 3.961 7 N -0.285 5.285 8 C -0.375 4.375 9 H 0.062 0.938 10 C -0.227 4.227 11 N -0.550 5.550 12 Si 0.773 3.227 13 H -0.205 1.205 14 H -0.217 1.217 15 H -0.207 1.207 16 C 0.045 3.955 17 H 0.100 0.900 18 C -0.158 4.158 19 C -0.161 4.161 20 C -0.015 4.015 21 N -0.334 5.334 22 C -0.006 4.006 23 C -0.079 4.079 24 C -0.196 4.196 25 C -0.180 4.180 26 C -0.191 4.191 27 C 0.295 3.705 28 O -0.452 6.452 29 H 0.153 0.847 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.126 0.874 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.050 0.950 51 H 0.089 0.911 52 H 0.062 0.938 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.134 -7.720 -13.372 17.009 hybrid contribution -0.483 0.023 1.527 1.602 sum 6.651 -7.698 -11.845 15.614 Atomic orbital electron populations 1.23548 0.75095 1.05653 1.02412 1.86550 1.25038 1.33090 1.83934 1.24251 0.92488 0.81058 0.70862 1.90613 1.67858 1.37264 1.46816 1.22054 0.85200 1.03488 1.04605 1.20626 0.83363 0.90243 1.01853 1.43633 1.00924 1.82905 1.00999 1.18794 1.02868 1.25317 0.90567 0.93811 1.25576 0.99898 0.95540 1.01662 1.70089 1.31181 1.22396 1.31301 0.85639 0.77438 0.77899 0.81690 1.20466 1.21710 1.20722 1.20494 0.93101 0.92236 0.89689 0.90003 1.21916 0.98212 0.96949 0.98675 1.21897 0.96670 1.00122 0.97367 1.21772 0.95539 0.84213 0.99928 1.47451 1.12335 1.10918 1.62695 1.21581 0.95699 0.85836 0.97530 1.20896 0.95329 0.96326 0.95397 1.21975 1.01532 0.99378 0.96729 1.21729 0.95874 1.00139 1.00284 1.21765 0.99894 0.95578 1.01891 1.21230 0.82764 0.90583 0.75881 1.90578 1.75384 1.32481 1.46709 0.84733 0.92459 0.91768 0.88473 0.89585 0.90220 0.95177 0.93860 0.92598 0.92992 0.90506 0.87717 0.92146 0.87414 0.93047 0.88949 0.92394 0.92159 0.90994 0.92500 0.94723 0.94952 0.91097 0.93795 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.85 16 2 O -0.37 -12.87 10.57 -51.40 -0.54 -13.41 16 3 C 0.47 19.35 7.96 71.24 0.57 19.92 16 4 O -0.54 -24.61 15.73 21.98 0.35 -24.26 16 5 C -0.11 -4.96 6.14 29.85 0.18 -4.78 16 6 C 0.17 8.21 4.49 86.38 0.39 8.60 16 7 N -0.57 -27.83 2.15 -682.98 -1.47 -29.30 16 8 C -0.25 -13.31 8.08 84.03 0.68 -12.63 16 9 H 0.04 2.49 7.57 -2.91 -0.02 2.47 16 10 C -0.03 -1.61 4.93 84.86 0.42 -1.19 16 11 N -0.91 -52.65 11.31 21.65 0.24 -52.40 16 12 Si 0.94 45.48 29.61 68.60 2.03 47.51 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 15 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 16 C 0.16 6.27 2.83 44.11 0.13 6.40 16 17 H 0.08 3.16 7.85 -2.38 -0.02 3.15 16 18 C -0.12 -4.15 5.44 30.73 0.17 -3.98 16 19 C -0.12 -2.82 6.03 30.74 0.19 -2.63 16 20 C 0.11 2.36 5.52 86.56 0.48 2.84 16 21 N -0.60 -17.74 2.38 -826.26 -1.97 -19.70 16 22 C 0.12 3.04 4.52 86.38 0.39 3.43 16 23 C -0.08 -1.68 0.84 -52.18 -0.04 -1.73 16 24 C -0.14 -2.26 7.17 71.98 0.52 -1.74 16 25 C -0.12 -3.34 7.11 71.98 0.51 -2.82 16 26 C -0.13 -2.36 8.47 71.98 0.61 -1.75 16 27 C 0.51 19.61 4.69 87.72 0.41 20.02 16 28 O -0.57 -25.85 13.96 -3.03 -0.04 -25.90 16 29 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.10 4.08 8.14 -2.38 -0.02 4.06 16 33 H 0.09 4.03 8.14 -2.39 -0.02 4.01 16 34 H 0.08 4.57 5.27 -2.39 -0.01 4.55 16 35 H 0.03 1.46 7.97 -2.39 -0.02 1.44 16 36 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.06 2.05 8.14 -2.38 -0.02 2.04 16 38 H 0.05 2.13 7.33 -2.39 -0.02 2.11 16 39 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.11 1.66 5.44 -2.38 -0.01 1.65 16 43 H 0.05 1.70 7.13 -2.39 -0.02 1.68 16 44 H 0.09 1.90 8.01 -2.39 -0.02 1.88 16 45 H 0.06 1.01 5.83 -2.39 -0.01 1.00 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 0.90 8.07 -2.39 -0.02 0.88 16 48 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.03 1.11 7.59 -2.39 -0.02 1.10 16 50 H 0.03 1.00 6.17 -2.39 -0.01 0.98 16 51 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 53 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -70.82 408.31 6.26 -64.56 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.87 Total: 23.09 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 6.78 Total: 29.81 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.19 Total: -101.40 kcal Atomic # 8 Polarization: -63.33 SS G_CDS: -0.24 Total: -63.57 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.82 6.26 -64.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473962.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.556 kcal (2) G-P(sol) polarization free energy of solvation -70.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds