Wall clock time and date at job start Sat Apr 11 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47239 * 2 1 4 4 C 1.52999 * 109.46873 * 119.99668 * 2 1 3 5 5 C 1.50702 * 109.47525 * 300.00017 * 4 2 1 6 6 H 1.08002 * 119.99441 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00075 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00481 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 179.73007 * 7 5 4 10 10 H 1.48494 * 109.47225 * 180.27306 * 9 7 5 11 11 H 1.48506 * 109.46866 * 300.27330 * 9 7 5 12 12 H 1.48498 * 109.47306 * 60.26614 * 9 7 5 13 13 C 1.52998 * 109.47592 * 240.00025 * 2 1 3 14 14 N 1.46495 * 109.47351 * 59.99643 * 13 2 1 15 15 C 1.34781 * 120.00121 * 179.97438 * 14 13 2 16 16 O 1.21578 * 119.99939 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99742 * 180.02562 * 15 14 13 18 18 C 1.46503 * 120.00043 * 180.02562 * 17 15 14 19 19 H 1.09001 * 110.45043 * 32.39872 * 18 17 15 20 20 C 1.54878 * 110.50768 * 269.65399 * 18 17 15 21 21 C 1.55021 * 102.10240 * 220.48726 * 20 18 17 22 22 O 1.44457 * 103.53285 * 36.86044 * 21 20 18 23 23 C 1.43459 * 106.90593 * 320.22888 * 22 21 20 24 24 C 1.52873 * 109.92409 * 145.78589 * 23 22 21 25 25 C 1.53158 * 109.16382 * 64.88392 * 24 23 22 26 26 O 1.42898 * 109.37730 * 57.04780 * 25 24 23 27 27 C 1.42912 * 114.18851 * 298.56311 * 26 25 24 28 28 C 1.52880 * 109.91640 * 266.80598 * 23 22 21 29 29 H 1.08995 * 109.47584 * 300.00485 * 1 2 3 30 30 H 1.09008 * 109.46973 * 60.00528 * 1 2 3 31 31 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47325 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46873 * 299.99945 * 3 2 1 34 34 H 1.09003 * 109.47092 * 59.99543 * 3 2 1 35 35 H 1.09009 * 109.47378 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47458 * 60.00758 * 4 2 1 37 37 H 0.97005 * 119.99656 * 359.72741 * 8 7 5 38 38 H 1.09000 * 109.47250 * 180.02562 * 13 2 1 39 39 H 1.09007 * 109.46897 * 299.99712 * 13 2 1 40 40 H 0.97003 * 119.99825 * 0.02562 * 14 13 2 41 41 H 0.97001 * 120.00785 * 0.02562 * 17 15 14 42 42 H 1.08997 * 110.90722 * 338.68829 * 20 18 17 43 43 H 1.09003 * 110.90672 * 102.28776 * 20 18 17 44 44 H 1.08992 * 110.61084 * 278.35176 * 21 20 18 45 45 H 1.08993 * 110.61018 * 155.36729 * 21 20 18 46 46 H 1.09005 * 109.52230 * 184.78539 * 24 23 22 47 47 H 1.09002 * 109.52804 * 304.97508 * 24 23 22 48 48 H 1.08994 * 109.48250 * 297.08157 * 25 24 23 49 49 H 1.09002 * 109.50315 * 177.03434 * 25 24 23 50 50 H 1.08997 * 109.48363 * 301.48257 * 27 26 25 51 51 H 1.08996 * 109.50911 * 181.42805 * 27 26 25 52 52 H 1.08996 * 109.52462 * 55.03100 * 28 23 22 53 53 H 1.08999 * 109.52231 * 175.22550 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5375 -0.0108 2.4798 6 1 0.9163 0.8671 2.3806 7 6 1.8710 -0.4815 3.7320 8 7 2.6271 -1.5508 3.8528 9 14 1.2546 0.4036 5.2572 10 1 1.7544 -0.2929 6.4697 11 1 1.7497 1.8036 5.2511 12 1 -0.2304 0.4038 5.2632 13 6 2.0400 -0.7212 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8779 -0.4909 -3.6695 16 8 2.5769 -1.4793 -3.7810 17 7 1.4290 0.1447 -4.7699 18 6 1.7830 -0.3558 -6.1005 19 1 1.8801 -1.4414 -6.0857 20 6 3.0942 0.3025 -6.5967 21 6 2.7811 0.5635 -8.0923 22 8 1.3844 0.9320 -8.0860 23 6 0.7317 0.0772 -7.1366 24 6 -0.3972 0.8377 -6.4408 25 6 -1.4723 1.1954 -7.4713 26 8 -1.9389 0.0018 -8.1035 27 6 -0.9303 -0.7145 -8.8191 28 6 0.1677 -1.1540 -7.8460 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1299 -0.7208 1.2496 36 1 1.6767 -1.7489 1.2493 37 1 2.9469 -2.0106 3.0608 38 1 3.1300 -0.7216 -1.2489 39 1 1.6767 -1.7490 -1.2492 40 1 0.9943 0.7581 -2.3564 41 1 0.8716 0.9335 -4.6810 42 1 3.2834 1.2378 -6.0699 43 1 3.9371 -0.3803 -6.4891 44 1 2.9366 -0.3410 -8.6804 45 1 3.3919 1.3810 -8.4752 46 1 -0.8329 0.2112 -5.6625 47 1 -0.0013 1.7506 -5.9957 48 1 -1.0487 1.8626 -8.2219 49 1 -2.3044 1.6916 -6.9719 50 1 -0.5004 -0.0692 -9.5851 51 1 -1.3722 -1.5928 -9.2896 52 1 0.9643 -1.6537 -8.3971 53 1 -0.2516 -1.8389 -7.1089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894859570.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:07 Heat of formation + Delta-G solvation = -157.196923 kcal Electronic energy + Delta-G solvation = -31297.171713 eV Core-core repulsion = 27167.392884 eV Total energy + Delta-G solvation = -4129.778829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15129 -40.85020 -39.04948 -38.68906 -35.88934 -35.47001 -34.00467 -33.40936 -32.34074 -31.58390 -28.68100 -28.08205 -28.04859 -27.07775 -25.05123 -24.76244 -24.26619 -22.68131 -21.68780 -20.69577 -20.37534 -19.53909 -18.45720 -18.00186 -17.23935 -17.04847 -16.91741 -16.72892 -16.29428 -16.22378 -15.95166 -15.65377 -15.54340 -15.39106 -15.22561 -15.03123 -14.31856 -14.30662 -14.05094 -13.78846 -13.67067 -13.35496 -13.31988 -13.06580 -13.03689 -12.80434 -12.71422 -12.62297 -12.36892 -12.35388 -12.26086 -11.95546 -11.86504 -11.82094 -11.63395 -11.47677 -11.31743 -11.20160 -10.73888 -10.57247 -10.50288 -10.48242 -10.36651 -9.83935 -8.58724 -6.27854 1.54541 1.57193 1.63345 1.80998 2.06205 2.61428 2.68460 2.93741 3.18411 3.24344 3.42582 3.47160 3.60006 3.87058 3.94028 3.98140 3.99285 4.06623 4.07609 4.11020 4.27901 4.33552 4.43697 4.56449 4.56998 4.58347 4.63227 4.67142 4.74851 4.77016 4.80050 4.84802 4.88543 4.94425 4.98114 4.98935 5.02281 5.03489 5.13884 5.26514 5.31473 5.33796 5.41519 5.45215 5.50367 5.65178 5.81116 5.89727 6.10240 6.24685 6.28281 6.65859 7.00166 7.50158 7.52869 8.81249 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022104 B = 0.002165 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.461993 B =12928.504498 C =13464.822487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.057 4.057 3 C -0.120 4.120 4 C 0.023 3.977 5 C -0.587 4.587 6 H 0.065 0.935 7 C -0.047 4.047 8 N -0.947 5.947 9 Si 1.114 2.886 10 H -0.292 1.292 11 H -0.268 1.268 12 H -0.268 1.268 13 C 0.162 3.838 14 N -0.723 5.723 15 C 0.700 3.300 16 O -0.636 6.636 17 N -0.723 5.723 18 C 0.140 3.860 19 H 0.087 0.913 20 C -0.166 4.166 21 C 0.049 3.951 22 O -0.367 6.367 23 C 0.104 3.896 24 C -0.151 4.151 25 C 0.064 3.936 26 O -0.403 6.403 27 C 0.066 3.934 28 C -0.165 4.165 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.055 0.945 35 H -0.018 1.018 36 H -0.019 1.019 37 H 0.252 0.748 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.410 0.590 41 H 0.411 0.589 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.058 0.942 49 H 0.109 0.891 50 H 0.059 0.941 51 H 0.105 0.895 52 H 0.089 0.911 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 9.110 -28.643 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.058 4.058 3 C -0.177 4.177 4 C -0.015 4.015 5 C -0.625 4.625 6 H 0.084 0.916 7 C -0.243 4.243 8 N -0.586 5.586 9 Si 0.936 3.064 10 H -0.218 1.218 11 H -0.193 1.193 12 H -0.193 1.193 13 C 0.037 3.963 14 N -0.379 5.379 15 C 0.400 3.600 16 O -0.518 6.518 17 N -0.382 5.382 18 C 0.034 3.966 19 H 0.105 0.895 20 C -0.205 4.205 21 C -0.027 4.027 22 O -0.286 6.286 23 C 0.064 3.936 24 C -0.189 4.189 25 C -0.013 4.013 26 O -0.322 6.322 27 C -0.011 4.011 28 C -0.203 4.203 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.000 1.000 36 H 0.000 1.000 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.247 0.753 41 H 0.251 0.749 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.131 0.869 46 H 0.104 0.896 47 H 0.114 0.886 48 H 0.076 0.924 49 H 0.127 0.873 50 H 0.077 0.923 51 H 0.123 0.877 52 H 0.107 0.893 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.106 8.312 -27.212 29.101 hybrid contribution 0.551 -0.172 -1.049 1.197 sum -5.555 8.140 -28.261 29.930 Atomic orbital electron populations 1.21677 0.93428 1.00883 1.01727 1.20582 0.96778 0.96253 0.92151 1.21677 0.99771 0.94539 1.01718 1.19155 0.93951 0.94350 0.94003 1.22346 1.33701 1.14204 0.92292 0.91643 1.27331 0.95014 0.96596 1.05373 1.70917 1.34976 1.20007 1.32684 0.82972 0.76547 0.75020 0.71886 1.21820 1.19302 1.19309 1.21036 0.97419 0.94911 0.82911 1.44980 1.56177 1.33353 1.03419 1.16120 0.80044 0.82544 0.81266 1.90891 1.44633 1.29672 1.86582 1.45134 1.56586 1.33033 1.03468 1.22132 0.94010 0.99532 0.80944 0.89513 1.23575 0.97688 1.01940 0.97326 1.23672 0.82091 1.02227 0.94718 1.88891 1.21028 1.57883 1.60844 1.21972 0.92312 0.91114 0.88245 1.22324 0.95555 1.01780 0.99268 1.22628 0.97494 0.86530 0.94614 1.87900 1.36113 1.38703 1.69526 1.22590 0.88617 0.96783 0.93097 1.22596 1.00123 0.97088 1.00491 0.92628 0.90938 0.94624 0.94601 0.90954 0.92630 1.00015 1.00022 0.93836 0.93889 0.93919 0.75270 0.74875 0.90064 0.90160 0.90727 0.86876 0.89559 0.88555 0.92373 0.87340 0.92255 0.87720 0.89251 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 2 C -0.06 -2.12 0.54 -52.18 -0.03 -2.15 16 3 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 4 C 0.02 1.15 3.35 29.85 0.10 1.25 16 5 C -0.59 -31.50 7.65 25.60 0.20 -31.30 16 6 H 0.07 3.30 5.68 -2.91 -0.02 3.28 16 7 C -0.05 -2.66 5.46 84.65 0.46 -2.20 16 8 N -0.95 -59.20 13.65 21.45 0.29 -58.91 16 9 Si 1.11 49.44 29.90 68.60 2.05 51.49 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 12 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 13 C 0.16 5.71 4.56 86.38 0.39 6.11 16 14 N -0.72 -19.26 4.96 -478.55 -2.37 -21.64 16 15 C 0.70 19.86 8.56 179.06 1.53 21.40 16 16 O -0.64 -24.19 15.99 -3.96 -0.06 -24.25 16 17 N -0.72 -13.91 4.45 -453.42 -2.02 -15.93 16 18 C 0.14 2.55 3.01 45.91 0.14 2.69 16 19 H 0.09 1.96 7.10 -2.39 -0.02 1.94 16 20 C -0.17 -2.64 6.88 31.93 0.22 -2.43 16 21 C 0.05 0.58 7.66 72.67 0.56 1.14 16 22 O -0.37 -5.39 10.03 -148.98 -1.49 -6.89 16 23 C 0.10 1.52 0.72 -10.60 -0.01 1.51 16 24 C -0.15 -1.94 3.82 30.60 0.12 -1.82 16 25 C 0.06 0.85 6.72 72.03 0.48 1.34 16 26 O -0.40 -7.11 10.75 -148.98 -1.60 -8.71 16 27 C 0.07 0.92 6.72 72.04 0.48 1.40 16 28 C -0.16 -2.34 4.87 30.61 0.15 -2.19 16 29 H 0.05 1.99 6.62 -2.39 -0.02 1.98 16 30 H 0.07 1.77 6.86 -2.38 -0.02 1.75 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 34 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 35 H -0.02 -1.02 8.01 -2.38 -0.02 -1.04 16 36 H -0.02 -1.02 8.00 -2.39 -0.02 -1.04 16 37 H 0.25 16.11 7.22 -92.70 -0.67 15.44 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.41 8.23 6.18 -92.71 -0.57 7.65 16 41 H 0.41 5.56 5.99 -92.71 -0.56 5.00 16 42 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 45 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.09 1.20 7.68 -2.38 -0.02 1.18 16 47 H 0.10 0.93 7.00 -2.39 -0.02 0.92 16 48 H 0.06 0.78 7.90 -2.39 -0.02 0.76 16 49 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.06 0.80 7.90 -2.39 -0.02 0.78 16 51 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.09 1.08 8.07 -2.39 -0.02 1.06 16 53 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -73.55 400.78 0.63 -72.92 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.12 Total: 23.92 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 5.96 Total: -12.01 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -4.10 Total: -96.47 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -3.16 Total: -39.85 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal Total: -73.55 0.63 -72.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894859570.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.276 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds