Wall clock time and date at job start Sat Apr 11 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46520 * 2 1 4 4 C 1.50698 * 109.54377 * 62.36801 * 3 2 1 5 5 O 1.21283 * 119.99562 * 247.72408 * 4 3 2 6 6 N 1.34769 * 120.00369 * 67.72664 * 4 3 2 7 7 C 1.46506 * 120.00082 * 185.01504 * 6 4 3 8 8 C 1.52998 * 109.47162 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.51091 * 304.89766 * 8 7 6 10 10 C 1.53290 * 109.55430 * 184.76821 * 8 7 6 11 11 N 1.47151 * 108.38745 * 187.74523 * 10 8 7 12 12 C 1.36929 * 120.98513 * 230.55922 * 11 10 8 13 13 H 1.08000 * 120.00328 * 145.59266 * 12 11 10 14 14 C 1.38814 * 120.00328 * 325.58903 * 12 11 10 15 15 N 1.31621 * 119.99355 * 356.39213 * 14 12 11 16 16 Si 1.86799 * 120.00313 * 176.39402 * 14 12 11 17 17 H 1.48491 * 109.47317 * 89.99895 * 16 14 12 18 18 H 1.48504 * 109.47180 * 210.00416 * 16 14 12 19 19 H 1.48501 * 109.46981 * 329.99912 * 16 14 12 20 20 C 1.47153 * 118.02987 * 50.54026 * 11 10 8 21 21 C 1.53292 * 108.38645 * 309.45929 * 20 11 10 22 22 O 1.42962 * 109.51132 * 64.99716 * 8 7 6 23 23 C 1.53188 * 109.54027 * 182.54009 * 3 2 1 24 24 C 1.53281 * 109.06435 * 176.85341 * 23 3 2 25 25 O 1.42904 * 109.45954 * 302.44733 * 24 23 3 26 26 C 1.42898 * 114.10096 * 61.15693 * 25 24 23 27 27 C 1.53097 * 109.41417 * 298.84250 * 26 25 24 28 28 H 1.09000 * 109.46973 * 306.32987 * 1 2 3 29 29 H 1.08995 * 109.47533 * 66.33158 * 1 2 3 30 30 H 1.09004 * 109.46771 * 186.33308 * 1 2 3 31 31 H 1.08996 * 109.46960 * 240.00534 * 2 1 3 32 32 H 1.08996 * 109.47645 * 119.99890 * 2 1 3 33 33 H 0.97000 * 120.00367 * 5.00757 * 6 4 3 34 34 H 1.08997 * 109.47024 * 59.99622 * 7 6 4 35 35 H 1.09000 * 109.46847 * 299.99902 * 7 6 4 36 36 H 1.09009 * 109.46946 * 180.10334 * 9 8 7 37 37 H 1.09000 * 109.47612 * 300.10014 * 9 8 7 38 38 H 1.09000 * 109.47605 * 60.10634 * 9 8 7 39 39 H 1.09002 * 109.68440 * 307.47429 * 10 8 7 40 40 H 1.09002 * 109.67975 * 67.99211 * 10 8 7 41 41 H 0.97008 * 119.99459 * 179.97438 * 15 14 12 42 42 H 1.09010 * 109.68087 * 189.74354 * 20 11 10 43 43 H 1.08995 * 109.68496 * 69.19080 * 20 11 10 44 44 H 1.09001 * 109.51379 * 172.22704 * 21 20 11 45 45 H 1.09003 * 109.51914 * 292.33229 * 21 20 11 46 46 H 1.08998 * 109.52119 * 296.84580 * 23 3 2 47 47 H 1.08999 * 109.51878 * 57.02992 * 23 3 2 48 48 H 1.08994 * 109.45505 * 182.45086 * 24 23 3 49 49 H 1.09000 * 109.45721 * 62.43768 * 24 23 3 50 50 H 1.08997 * 109.48268 * 178.85971 * 26 25 24 51 51 H 1.09002 * 109.48918 * 58.82974 * 26 25 24 52 52 H 1.09002 * 109.52099 * 297.69688 * 27 26 25 53 53 H 1.09003 * 109.57601 * 177.54725 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5869 2.1374 1.2582 5 8 0.7760 3.0371 1.1956 6 7 2.0828 1.7591 2.4528 7 6 1.5627 2.3577 3.6847 8 6 2.2898 1.7578 4.8898 9 6 2.1645 0.2333 4.8552 10 6 1.6667 2.2936 6.1838 11 7 2.4967 1.8523 7.3160 12 6 1.9363 1.2363 8.4029 13 1 2.4792 0.4618 8.9242 14 6 0.6704 1.6073 8.8350 15 7 0.0380 2.5992 8.2444 16 14 -0.1357 0.6990 10.2544 17 1 0.2237 1.3615 11.5338 18 1 -1.6106 0.7213 10.0825 19 1 0.3390 -0.7079 10.2750 20 6 3.9468 2.0923 7.2453 21 6 4.4589 1.5663 5.8996 22 8 3.6709 2.1245 4.8453 23 6 3.5704 1.4451 -0.0640 24 6 4.0659 2.8934 -0.1429 25 8 3.4890 3.5325 -1.2835 26 6 2.0619 3.6000 -1.2548 27 6 1.4858 2.1819 -1.2217 28 1 -0.3633 0.6088 0.8279 29 1 -0.3634 0.4125 -0.9411 30 1 -0.3633 -1.0214 0.1134 31 1 1.8933 -0.5137 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 2.7840 1.0903 2.4972 34 1 0.4953 2.1527 3.7658 35 1 1.7249 3.4353 3.6615 36 1 2.6812 -0.1933 5.7150 37 1 1.1113 -0.0456 4.8891 38 1 2.6118 -0.1473 3.9370 39 1 1.6366 3.3827 6.1533 40 1 0.6558 1.9013 6.2943 41 1 -0.8468 2.8582 8.5461 42 1 4.4461 1.5661 8.0590 43 1 4.1462 3.1611 7.3216 44 1 5.5012 1.8567 5.7679 45 1 4.3784 0.4794 5.8789 46 1 3.9731 0.9682 0.8296 47 1 3.8989 0.8994 -0.9485 48 1 5.1521 2.9012 -0.2326 49 1 3.7716 3.4276 0.7606 50 1 1.7044 4.1168 -2.1455 51 1 1.7413 4.1435 -0.3660 52 1 1.7722 1.6512 -2.1297 53 1 0.3989 2.2307 -1.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108310375.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:20 Heat of formation + Delta-G solvation = -135.048203 kcal Electronic energy + Delta-G solvation = -32760.708853 eV Core-core repulsion = 28631.890465 eV Total energy + Delta-G solvation = -4128.818388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.07534 -40.67119 -39.11072 -36.57081 -36.45896 -35.95783 -33.27810 -33.18571 -32.11311 -31.54209 -29.57779 -28.18271 -27.63238 -26.27896 -24.97844 -24.67382 -23.59601 -22.68900 -22.47606 -20.68681 -20.04926 -18.93417 -17.91885 -17.48251 -17.11274 -17.00127 -16.91422 -16.80109 -16.30432 -16.09324 -15.62172 -15.50435 -15.44049 -15.28850 -14.95241 -14.69405 -14.66955 -14.32304 -14.14178 -13.82544 -13.40928 -13.27806 -13.26102 -13.13775 -12.94806 -12.93538 -12.79989 -12.55584 -12.44125 -12.41320 -12.20882 -12.15022 -12.01220 -11.94965 -11.89343 -11.40422 -11.35151 -11.14809 -10.78215 -10.64458 -10.54773 -10.36436 -10.07947 -8.61082 -7.90665 -5.48140 1.45353 1.46081 1.55152 1.63706 2.13198 2.46165 2.79099 2.94033 3.26384 3.47608 3.51436 3.54799 3.74607 3.89946 4.00717 4.02439 4.06067 4.10952 4.27889 4.33617 4.42374 4.45402 4.47632 4.48944 4.54547 4.57477 4.62964 4.68116 4.71902 4.78346 4.79286 4.87904 4.94012 4.96301 5.02458 5.05272 5.05952 5.11844 5.13635 5.16861 5.20340 5.23509 5.35811 5.38374 5.41790 5.56147 5.60155 6.22251 6.32663 6.38717 6.55256 7.08521 7.24594 7.73770 8.31796 9.14092 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.003072 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.907243 B = 9113.106081 C = 9696.688904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C -0.075 4.075 4 C 0.519 3.481 5 O -0.580 6.580 6 N -0.705 5.705 7 C 0.151 3.849 8 C 0.093 3.907 9 C -0.150 4.150 10 C 0.172 3.828 11 N -0.607 5.607 12 C -0.263 4.263 13 H 0.071 0.929 14 C -0.043 4.043 15 N -0.936 5.936 16 Si 0.969 3.031 17 H -0.286 1.286 18 H -0.295 1.295 19 H -0.264 1.264 20 C 0.102 3.898 21 C 0.053 3.947 22 O -0.386 6.386 23 C -0.139 4.139 24 C 0.051 3.949 25 O -0.395 6.395 26 C 0.049 3.951 27 C -0.125 4.125 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.411 0.589 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.078 0.922 39 H -0.012 1.012 40 H 0.064 0.936 41 H 0.250 0.750 42 H 0.072 0.928 43 H 0.010 0.990 44 H 0.117 0.883 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.116 0.884 49 H 0.025 0.975 50 H 0.105 0.895 51 H 0.037 0.963 52 H 0.100 0.900 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -8.272 -19.535 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.141 4.141 3 C -0.078 4.078 4 C 0.307 3.693 5 O -0.460 6.460 6 N -0.358 5.358 7 C 0.026 3.974 8 C 0.052 3.948 9 C -0.208 4.208 10 C 0.045 3.955 11 N -0.332 5.332 12 C -0.393 4.393 13 H 0.089 0.911 14 C -0.239 4.239 15 N -0.582 5.582 16 Si 0.797 3.203 17 H -0.213 1.213 18 H -0.221 1.221 19 H -0.189 1.189 20 C -0.023 4.023 21 C -0.025 4.025 22 O -0.305 6.305 23 C -0.176 4.176 24 C -0.025 4.025 25 O -0.314 6.314 26 C -0.027 4.027 27 C -0.163 4.163 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.249 0.751 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.006 0.994 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.028 0.972 44 H 0.135 0.865 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.127 0.873 48 H 0.134 0.866 49 H 0.043 0.957 50 H 0.123 0.877 51 H 0.056 0.944 52 H 0.119 0.881 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.605 -7.406 -19.784 22.452 hybrid contribution -1.006 -0.014 1.964 2.207 sum 6.599 -7.419 -17.820 20.400 Atomic orbital electron populations 1.21850 0.96059 1.02063 1.01494 1.21593 0.95855 0.92025 1.04673 1.21022 0.97633 0.97567 0.91561 1.21101 0.80290 0.82420 0.85528 1.90658 1.36119 1.31826 1.87399 1.45873 1.41136 1.43971 1.04796 1.20951 0.96952 0.97075 0.82392 1.22198 0.82790 0.95352 0.94432 1.22081 1.02354 0.93980 1.02338 1.21006 0.95298 0.94324 0.84852 1.44141 1.02222 1.69391 1.17420 1.19453 1.00558 1.13508 1.05810 0.91122 1.26055 1.00004 0.97453 1.00422 1.70117 1.14192 1.30194 1.43651 0.85256 0.77013 0.78759 0.79317 1.21289 1.22126 1.18875 1.21825 0.85245 0.97435 0.97810 1.23109 0.95000 0.98010 0.86346 1.87833 1.19012 1.73882 1.49780 1.22353 0.91927 0.97742 1.05599 1.22755 0.99646 0.92312 0.87806 1.87873 1.20473 1.79639 1.43463 1.22764 0.80390 0.97167 1.02428 1.22052 1.01313 0.95800 0.97107 0.95482 0.91709 0.91134 0.87843 0.90569 0.75076 0.91395 0.93303 0.92047 0.92629 0.90353 0.99390 0.91740 0.94034 0.90990 0.97238 0.86525 0.92006 0.88921 0.87313 0.86588 0.95680 0.87725 0.94420 0.88142 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.19 71.98 0.66 -2.08 16 2 C -0.10 -1.47 4.99 30.60 0.15 -1.31 16 3 C -0.07 -1.39 0.45 -52.81 -0.02 -1.41 16 4 C 0.52 14.19 3.78 87.66 0.33 14.52 16 5 O -0.58 -20.80 14.18 -3.04 -0.04 -20.84 16 6 N -0.71 -18.87 5.07 -463.07 -2.35 -21.22 16 7 C 0.15 5.25 4.86 86.38 0.42 5.67 16 8 C 0.09 3.39 0.78 -10.70 -0.01 3.38 16 9 C -0.15 -4.69 7.86 71.98 0.57 -4.13 16 10 C 0.17 8.26 4.02 86.35 0.35 8.61 16 11 N -0.61 -29.67 2.55 -697.55 -1.78 -31.45 16 12 C -0.26 -13.93 9.61 84.04 0.81 -13.13 16 13 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 14 C -0.04 -2.37 5.19 84.86 0.44 -1.93 16 15 N -0.94 -54.95 10.99 21.65 0.24 -54.71 16 16 Si 0.97 43.76 29.56 68.60 2.03 45.79 16 17 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 20 C 0.10 4.09 6.73 86.35 0.58 4.67 16 21 C 0.05 1.64 6.60 72.08 0.48 2.12 16 22 O -0.39 -13.31 10.17 -148.98 -1.52 -14.83 16 23 C -0.14 -2.06 4.82 30.75 0.15 -1.91 16 24 C 0.05 1.03 6.62 72.08 0.48 1.51 16 25 O -0.40 -9.37 10.77 -148.98 -1.60 -10.97 16 26 C 0.05 1.14 6.56 72.01 0.47 1.61 16 27 C -0.12 -2.38 4.05 30.68 0.12 -2.25 16 28 H 0.03 0.63 7.09 -2.39 -0.02 0.62 16 29 H 0.06 1.04 6.83 -2.39 -0.02 1.02 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.41 8.93 5.82 -92.71 -0.54 8.39 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 2.10 6.11 -2.38 -0.01 2.08 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.84 6.59 -2.39 -0.02 1.83 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.06 3.48 6.34 -2.39 -0.02 3.46 16 41 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 42 H 0.07 2.68 7.96 -2.38 -0.02 2.66 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.06 1.79 6.26 -2.39 -0.01 1.78 16 46 H 0.09 1.13 7.01 -2.39 -0.02 1.12 16 47 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.02 0.64 7.38 -2.39 -0.02 0.62 16 50 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.04 1.12 6.10 -2.39 -0.01 1.11 16 52 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.08 1.59 6.51 -2.39 -0.02 1.58 16 Total: -1.00 -69.66 392.69 1.31 -68.35 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.36 Total: 25.96 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 5.97 Total: 13.92 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -3.89 Total: -107.38 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -3.16 Total: -46.64 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.66 1.31 -68.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108310375.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.701 kcal (2) G-P(sol) polarization free energy of solvation -69.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds