Wall clock time and date at job start Sat Apr 11 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99745 * 2 1 4 4 H 1.09005 * 109.47389 * 20.44188 * 3 2 1 5 5 C 1.52995 * 109.47356 * 260.44218 * 3 2 1 6 6 N 1.46505 * 109.47174 * 63.97060 * 5 3 2 7 7 C 1.34770 * 119.99990 * 185.67292 * 6 5 3 8 8 O 1.21354 * 120.00406 * 0.02562 * 7 6 5 9 9 C 1.49459 * 119.99982 * 180.02562 * 7 6 5 10 10 O 1.21352 * 119.99680 * 6.44411 * 9 7 6 11 11 N 1.34775 * 120.00339 * 186.44720 * 9 7 6 12 12 C 1.46926 * 120.62555 * 5.68694 * 11 9 7 13 13 C 1.52762 * 109.00740 * 233.58364 * 12 11 9 14 14 C 1.53044 * 109.38353 * 305.58822 * 13 12 11 15 15 C 1.50697 * 109.44907 * 181.25327 * 14 13 12 16 16 H 1.08005 * 119.99835 * 239.94057 * 15 14 13 17 17 C 1.37868 * 120.00122 * 59.94063 * 15 14 13 18 18 N 1.31516 * 120.00047 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00370 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46782 * 89.99741 * 19 17 15 21 21 H 1.48498 * 109.47446 * 210.00039 * 19 17 15 22 22 H 1.48502 * 109.46832 * 330.00347 * 19 17 15 23 23 C 1.53046 * 109.53582 * 61.24051 * 14 13 12 24 24 C 1.46914 * 120.63293 * 185.96608 * 11 9 7 25 25 C 1.53005 * 109.47238 * 140.43968 * 3 2 1 26 26 C 1.52998 * 109.47290 * 295.00346 * 25 3 2 27 27 C 1.53001 * 109.46954 * 174.99740 * 26 25 3 28 28 C 1.53001 * 109.46856 * 294.99861 * 26 25 3 29 29 H 1.09001 * 109.47343 * 64.99433 * 1 2 3 30 30 H 1.09006 * 109.46840 * 304.99597 * 1 2 3 31 31 H 1.09001 * 109.47042 * 185.00018 * 1 2 3 32 32 H 1.09001 * 109.47757 * 183.97282 * 5 3 2 33 33 H 1.09007 * 109.47130 * 303.97568 * 5 3 2 34 34 H 0.97004 * 119.99455 * 5.67797 * 6 5 3 35 35 H 1.09000 * 109.59038 * 353.42203 * 12 11 9 36 36 H 1.09002 * 109.58953 * 113.84710 * 12 11 9 37 37 H 1.09003 * 109.56580 * 185.55726 * 13 12 11 38 38 H 1.08997 * 109.36093 * 65.49812 * 13 12 11 39 39 H 1.08995 * 109.46052 * 301.22457 * 14 13 12 40 40 H 0.96998 * 120.00084 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.49814 * 178.68326 * 23 14 13 42 42 H 1.08997 * 109.52049 * 58.59922 * 23 14 13 43 43 H 1.09001 * 109.58913 * 246.15460 * 24 11 9 44 44 H 1.08999 * 109.58727 * 6.43788 * 24 11 9 45 45 H 1.09007 * 109.46536 * 55.00365 * 25 3 2 46 46 H 1.09001 * 109.47134 * 174.99542 * 25 3 2 47 47 H 1.09000 * 109.47333 * 54.99489 * 26 25 3 48 48 H 1.09000 * 109.47305 * 59.99733 * 27 26 25 49 49 H 1.09001 * 109.46482 * 180.02562 * 27 26 25 50 50 H 1.09003 * 109.47335 * 299.99629 * 27 26 25 51 51 H 1.08994 * 109.47166 * 59.99605 * 28 26 25 52 52 H 1.08999 * 109.47122 * 180.02562 * 28 26 25 53 53 H 1.09000 * 109.46846 * 299.99926 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2782 2.0291 0.3589 5 6 2.4364 1.6741 -1.4224 6 7 1.2526 1.7538 -2.2818 7 6 1.3942 1.9529 -3.6072 8 8 2.5023 2.0657 -4.0889 9 6 0.1864 2.0348 -4.4838 10 8 -0.9222 2.0395 -3.9903 11 7 0.3286 2.1033 -5.8223 12 6 1.6546 1.9737 -6.4417 13 6 1.8979 3.1757 -7.3525 14 6 0.7456 3.2968 -8.3525 15 6 0.9994 4.4638 -9.2715 16 1 0.2955 5.2819 -9.3126 17 6 2.1302 4.4872 -10.0599 18 7 2.9872 3.4908 -10.0103 19 14 2.4446 5.9334 -11.1998 20 1 3.2268 6.9702 -10.4797 21 1 3.2089 5.4716 -12.3862 22 1 1.1477 6.5082 -11.6393 23 6 -0.5666 3.5189 -7.5968 24 6 -0.8385 2.3151 -6.6891 25 6 3.2336 1.3192 0.9187 26 6 2.7902 1.0735 2.3623 27 6 4.0224 0.9629 3.2625 28 6 1.9175 2.2387 2.8330 29 1 -0.3634 0.4344 -0.9313 30 1 -0.3633 0.5894 0.8419 31 1 -0.3633 -1.0238 0.0896 32 1 2.9430 2.6391 -1.4115 33 1 3.1143 0.9122 -1.8075 34 1 0.3668 1.6632 -1.8968 35 1 2.4193 1.9443 -5.6656 36 1 1.6944 1.0579 -7.0316 37 1 2.8353 3.0409 -7.8922 38 1 1.9522 4.0815 -6.7486 39 1 0.6762 2.3809 -8.9392 40 1 3.7826 3.5071 -10.5652 41 1 -1.3833 3.6284 -8.3103 42 1 -0.4895 4.4215 -6.9906 43 1 -1.0061 1.4278 -7.2996 44 1 -1.7187 2.5085 -6.0761 45 1 3.9263 0.5350 0.6129 46 1 3.7285 2.2880 0.8504 47 1 2.2181 0.1471 2.4140 48 1 4.5945 1.8893 3.2107 49 1 3.7064 0.7874 4.2908 50 1 4.6441 0.1327 2.9271 51 1 1.0398 2.3175 2.1916 52 1 1.6019 2.0639 3.8616 53 1 2.4896 3.1651 2.7813 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118052566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:25 Heat of formation + Delta-G solvation = -137.177129 kcal Electronic energy + Delta-G solvation = -30722.784386 eV Core-core repulsion = 26593.873680 eV Total energy + Delta-G solvation = -4128.910705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08968 -40.33196 -39.45814 -38.62375 -36.73285 -36.04995 -35.18609 -33.03905 -31.94747 -31.76934 -28.61800 -28.02993 -27.64429 -27.22041 -25.62975 -24.17768 -23.58376 -22.77087 -21.75834 -20.77417 -20.47563 -18.86755 -18.40232 -18.09732 -17.98072 -17.09595 -16.95252 -16.57338 -16.50046 -16.19344 -15.77218 -15.46829 -15.39321 -15.05229 -14.77579 -14.67200 -14.64284 -14.52257 -14.16811 -14.12534 -13.79122 -13.41845 -13.27223 -13.21637 -13.06332 -12.81639 -12.74533 -12.54613 -12.47964 -12.33441 -12.19291 -12.13920 -11.93829 -11.66751 -11.51158 -11.45332 -11.37553 -11.07973 -11.02162 -10.66948 -10.47026 -10.38139 -9.95567 -9.71668 -8.07582 -6.21626 0.25263 1.24447 1.41194 1.42330 1.51902 2.04739 2.41611 2.43773 2.76035 3.17791 3.19048 3.55194 3.86698 4.01474 4.10033 4.13173 4.20905 4.25925 4.31052 4.37988 4.46819 4.48306 4.50107 4.50979 4.54638 4.68152 4.78423 4.80464 4.82122 4.84820 4.86069 4.91707 4.92838 5.06726 5.12406 5.12566 5.14141 5.18531 5.31440 5.37730 5.38055 5.47644 5.50799 5.56535 5.62531 5.91015 5.97166 6.10202 6.19775 6.25082 6.37931 6.63739 6.86035 6.89189 7.46065 8.96103 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.002159 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.297046 B =12967.746954 C =13774.915611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.392 6.392 3 C 0.081 3.919 4 H 0.087 0.913 5 C 0.092 3.908 6 N -0.685 5.685 7 C 0.510 3.490 8 O -0.521 6.521 9 C 0.501 3.499 10 O -0.550 6.550 11 N -0.567 5.567 12 C 0.057 3.943 13 C -0.107 4.107 14 C 0.042 3.958 15 C -0.534 4.534 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.914 5.914 19 Si 0.952 3.048 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.113 4.113 24 C 0.111 3.889 25 C -0.111 4.111 26 C -0.092 4.092 27 C -0.146 4.146 28 C -0.151 4.151 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.414 0.586 35 H 0.148 0.852 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.022 0.978 39 H 0.003 0.997 40 H 0.261 0.739 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.053 0.947 52 H 0.058 0.942 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 -6.125 26.722 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.311 6.311 3 C 0.023 3.977 4 H 0.105 0.895 5 C -0.030 4.030 6 N -0.339 5.339 7 C 0.291 3.709 8 O -0.400 6.400 9 C 0.283 3.717 10 O -0.430 6.430 11 N -0.298 5.298 12 C -0.063 4.063 13 C -0.145 4.145 14 C 0.023 3.977 15 C -0.572 4.572 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.553 5.553 19 Si 0.778 3.222 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.151 4.151 24 C -0.010 4.010 25 C -0.149 4.149 26 C -0.111 4.111 27 C -0.204 4.204 28 C -0.209 4.209 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.254 0.746 35 H 0.164 0.836 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.021 0.979 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.110 0.890 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.072 0.928 52 H 0.077 0.923 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.791 -6.276 26.558 27.349 hybrid contribution -0.230 0.878 -1.140 1.457 sum -2.021 -5.398 25.418 26.064 Atomic orbital electron populations 1.23073 0.80151 1.04130 1.00219 1.87956 1.20600 1.27652 1.94854 1.22548 0.97482 0.85600 0.92101 0.89483 1.22315 0.87253 1.03241 0.90227 1.45888 1.12144 1.70121 1.05743 1.20152 0.88884 0.77712 0.84104 1.90361 1.27592 1.49957 1.72042 1.20137 0.89322 0.78768 0.83446 1.90673 1.26496 1.51606 1.74262 1.48215 1.10640 1.66204 1.04779 1.23198 0.84429 0.98604 1.00103 1.21616 1.02524 0.94654 0.95737 1.18669 0.91138 0.95405 0.92477 1.21547 1.06738 1.05995 1.22894 0.93067 1.25718 0.96041 0.98411 0.98423 1.69979 1.12236 1.32425 1.40695 0.85647 0.78195 0.79784 0.78555 1.20416 1.20872 1.19367 1.21863 0.99349 0.96314 0.97607 1.21860 0.87676 0.99022 0.92465 1.21759 0.95636 1.03689 0.93824 1.21024 0.97154 0.99281 0.93643 1.21822 0.97263 1.01950 0.99330 1.21938 0.99554 0.98116 1.01256 0.94705 0.91935 0.88539 0.89139 0.90603 0.74645 0.83557 0.92519 0.90656 0.95961 0.97894 0.92983 0.90857 0.93673 0.90389 0.88682 0.91013 0.89048 0.91378 0.92285 0.92353 0.92835 0.92768 0.92315 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.60 113.37 1.20 1.47 16 2 O -0.39 -6.49 9.74 -148.98 -1.45 -7.94 16 3 C 0.08 1.11 2.20 30.59 0.07 1.18 16 4 H 0.09 0.97 5.82 -2.38 -0.01 0.96 16 5 C 0.09 1.71 5.35 86.38 0.46 2.17 16 6 N -0.68 -15.72 5.41 -464.39 -2.51 -18.23 16 7 C 0.51 15.78 7.78 87.27 0.68 16.46 16 8 O -0.52 -18.48 13.07 -3.26 -0.04 -18.53 16 9 C 0.50 17.26 7.75 87.27 0.68 17.94 16 10 O -0.55 -19.23 15.93 -3.25 -0.05 -19.28 16 11 N -0.57 -21.20 2.98 -821.32 -2.45 -23.65 16 12 C 0.06 2.33 6.25 86.22 0.54 2.87 16 13 C -0.11 -5.18 5.14 30.53 0.16 -5.03 16 14 C 0.04 2.08 2.07 -11.51 -0.02 2.06 16 15 C -0.53 -29.47 8.56 25.60 0.22 -29.25 16 16 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 17 C 0.01 0.71 5.30 84.65 0.45 1.16 16 18 N -0.91 -52.61 11.31 21.44 0.24 -52.37 16 19 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C -0.11 -4.67 5.30 30.68 0.16 -4.50 16 24 C 0.11 3.98 6.42 86.37 0.55 4.53 16 25 C -0.11 -1.27 4.39 30.60 0.13 -1.14 16 26 C -0.09 -0.97 2.87 -10.79 -0.03 -1.00 16 27 C -0.15 -1.38 9.19 71.98 0.66 -0.72 16 28 C -0.15 -1.36 8.95 71.98 0.64 -0.72 16 29 H 0.03 0.50 5.81 -2.39 -0.01 0.48 16 30 H 0.06 0.58 8.00 -2.38 -0.02 0.56 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.60 8.13 -2.38 -0.02 1.58 16 34 H 0.41 8.42 5.42 -92.71 -0.50 7.92 16 35 H 0.15 5.93 3.74 -81.46 -0.30 5.63 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.08 4.11 6.03 -2.39 -0.01 4.10 16 38 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.08 2.61 8.14 -2.39 -0.02 2.60 16 44 H 0.09 3.14 7.04 -2.39 -0.02 3.12 16 45 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 0.85 7.69 -2.39 -0.02 0.84 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 50 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.05 0.47 6.46 -2.39 -0.02 0.46 16 52 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 53 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -64.83 409.77 2.42 -62.41 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.10 Total: 24.23 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 6.55 Total: 7.49 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -4.72 Total: -94.25 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -1.55 Total: -45.75 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.83 2.42 -62.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118052566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.766 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds