Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47063 * 2 1 4 4 C 1.53004 * 109.47063 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47184 * 181.35095 * 4 3 2 6 6 H 1.08994 * 109.47212 * 305.86322 * 5 4 3 7 7 C 1.53006 * 109.46975 * 185.86481 * 5 4 3 8 8 C 1.52998 * 109.46936 * 65.14211 * 7 5 4 9 9 C 1.52997 * 109.47102 * 65.86846 * 5 4 3 10 10 N 1.46501 * 109.46933 * 185.00034 * 9 5 4 11 11 C 1.34775 * 119.99624 * 179.97438 * 10 9 5 12 12 O 1.21349 * 120.00287 * 0.02562 * 11 10 9 13 13 C 1.49455 * 119.99959 * 179.97438 * 11 10 9 14 14 O 1.21349 * 119.99754 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99959 * 179.97438 * 13 11 10 16 16 C 1.47025 * 125.65095 * 0.02683 * 15 13 11 17 17 C 1.54324 * 107.39778 * 178.82717 * 16 15 13 18 18 C 1.55402 * 102.83175 * 337.97559 * 17 16 15 19 19 O 1.42900 * 110.89163 * 277.26675 * 18 17 16 20 20 C 1.50695 * 111.06695 * 153.48894 * 18 17 16 21 21 H 1.08004 * 120.00687 * 6.20883 * 20 18 17 22 22 C 1.37885 * 119.99891 * 186.20753 * 20 18 17 23 23 N 1.31513 * 119.99566 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00216 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47106 * 60.00162 * 24 22 20 26 26 H 1.48497 * 109.47234 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47247 * 300.00549 * 24 22 20 28 28 C 1.47430 * 125.64572 * 179.97438 * 15 13 11 29 29 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46528 * 299.99702 * 1 2 3 31 31 H 1.08998 * 109.47047 * 59.99956 * 1 2 3 32 32 H 1.09004 * 109.46528 * 240.00298 * 2 1 3 33 33 H 1.08998 * 109.47047 * 120.00044 * 2 1 3 34 34 H 1.09004 * 109.47205 * 60.00713 * 3 2 1 35 35 H 1.08998 * 109.47225 * 299.99935 * 3 2 1 36 36 H 1.09002 * 109.46786 * 61.34780 * 4 3 2 37 37 H 1.09000 * 109.46989 * 301.35580 * 4 3 2 38 38 H 1.09000 * 109.47032 * 185.14037 * 7 5 4 39 39 H 1.08999 * 109.47190 * 305.14275 * 7 5 4 40 40 H 1.09000 * 109.47512 * 53.07930 * 8 7 5 41 41 H 1.09001 * 109.47192 * 173.08127 * 8 7 5 42 42 H 1.09002 * 109.47470 * 293.08011 * 8 7 5 43 43 H 1.08996 * 109.47541 * 64.99846 * 9 5 4 44 44 H 1.09005 * 109.46994 * 304.99737 * 9 5 4 45 45 H 0.96995 * 120.00023 * 359.97438 * 10 9 5 46 46 H 1.08995 * 109.87685 * 298.31961 * 16 15 13 47 47 H 1.08998 * 109.87895 * 59.33448 * 16 15 13 48 48 H 1.08993 * 110.71821 * 96.25059 * 17 16 15 49 49 H 1.09004 * 110.71444 * 219.52116 * 17 16 15 50 50 H 0.96695 * 114.00134 * 173.68408 * 19 18 17 51 51 H 0.97008 * 119.99826 * 179.97438 * 23 22 20 52 52 H 1.09004 * 110.36641 * 323.00793 * 28 15 13 53 53 H 1.09010 * 110.36253 * 85.21818 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8845 0.0334 6 1 3.6333 3.4474 -0.7861 7 6 5.6029 2.8905 -0.1146 8 6 5.9828 2.3626 -1.4994 9 6 3.6946 3.5305 1.3656 10 7 4.0771 4.9447 1.3514 11 6 3.8329 5.7196 2.4267 12 8 3.2967 5.2459 3.4068 13 6 4.2236 7.1621 2.4124 14 8 4.7602 7.6357 1.4324 15 7 3.9789 7.9372 3.4875 16 6 3.3381 7.4950 4.7347 17 6 3.2953 8.7086 5.6870 18 6 4.4229 9.6227 5.1320 19 8 5.6998 9.2141 5.6265 20 6 4.1578 11.0695 5.4594 21 1 3.3278 11.3357 6.0972 22 6 4.9749 12.0538 4.9448 23 7 5.9852 11.7298 4.1678 24 14 4.6459 13.8473 5.3501 25 1 4.7271 14.0457 6.8196 26 1 5.6587 14.7005 4.6782 27 1 3.2898 14.2217 4.8743 28 6 4.3106 9.3686 3.6081 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9563 0.8901 35 1 1.6767 1.9563 -0.8900 36 1 3.9330 0.9499 -0.9027 37 1 3.9337 0.9076 0.8767 38 1 5.9752 3.9084 0.0009 39 1 6.0449 2.2529 0.6511 40 1 5.4434 2.9234 -2.2627 41 1 7.0556 2.4810 -1.6517 42 1 5.7201 1.3071 -1.5706 43 1 4.2123 3.0223 2.1791 44 1 2.6177 3.4468 1.5119 45 1 4.5060 5.3232 0.5681 46 1 2.3250 7.1496 4.5286 47 1 3.9195 6.6906 5.1852 48 1 2.3294 9.2102 5.6293 49 1 3.5120 8.4033 6.7107 50 1 6.4443 9.6909 5.2348 51 1 6.5599 12.4223 3.8054 52 1 5.2604 9.5806 3.1171 53 1 3.5170 9.9794 3.1775 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118204936.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -169.746299 kcal Electronic energy + Delta-G solvation = -30435.790183 eV Core-core repulsion = 26305.467173 eV Total energy + Delta-G solvation = -4130.323011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83243 -40.18844 -38.95636 -38.67624 -36.32695 -35.74243 -34.54648 -34.24507 -31.94831 -31.41639 -29.75192 -29.12534 -27.57140 -25.94752 -24.69487 -23.99316 -23.08054 -21.85924 -21.58329 -21.31173 -20.52661 -19.15631 -18.73425 -18.02443 -17.32892 -17.07972 -17.06686 -16.31563 -16.21543 -16.11347 -15.64189 -15.59621 -15.08689 -14.84734 -14.67446 -14.61563 -14.46483 -14.12794 -13.97049 -13.91520 -13.72337 -13.52169 -13.33112 -13.09690 -12.82183 -12.73669 -12.59698 -12.53362 -12.36840 -12.35973 -12.26968 -12.19683 -12.10869 -11.86293 -11.64528 -11.49594 -11.22975 -11.20885 -11.15731 -10.74923 -10.57458 -10.34887 -10.26845 -9.65142 -8.25237 -6.42104 0.33711 1.28300 1.45275 1.46204 1.53840 2.11590 2.37579 2.52852 3.00635 3.31995 3.68756 3.70284 3.76393 3.91043 4.05207 4.14316 4.15483 4.23137 4.31553 4.33097 4.47455 4.52714 4.58645 4.64492 4.66931 4.70718 4.72974 4.81031 4.86315 4.93708 4.96804 5.05044 5.05152 5.11791 5.13094 5.15281 5.16266 5.19825 5.26364 5.32426 5.34421 5.42431 5.42847 5.44710 5.54269 5.57288 5.73891 5.98085 6.06956 6.36471 6.61317 6.67640 6.91957 7.26243 7.34457 8.80221 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.002141 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.458416 B =13073.279448 C =13829.919934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.126 4.126 4 C -0.105 4.105 5 C -0.091 4.091 6 H 0.084 0.916 7 C -0.125 4.125 8 C -0.150 4.150 9 C 0.119 3.881 10 N -0.687 5.687 11 C 0.515 3.485 12 O -0.531 6.531 13 C 0.500 3.500 14 O -0.562 6.562 15 N -0.583 5.583 16 C 0.119 3.881 17 C -0.115 4.115 18 C 0.233 3.767 19 O -0.588 6.588 20 C -0.555 4.555 21 H 0.070 0.930 22 C 0.027 3.973 23 N -0.914 5.914 24 Si 0.966 3.034 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.269 1.269 28 C 0.107 3.893 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.416 0.584 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.374 0.626 51 H 0.270 0.730 52 H 0.058 0.942 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 -21.772 -10.385 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.143 4.143 5 C -0.110 4.110 6 H 0.102 0.898 7 C -0.163 4.163 8 C -0.207 4.207 9 C -0.003 4.003 10 N -0.341 5.341 11 C 0.295 3.705 12 O -0.408 6.408 13 C 0.284 3.716 14 O -0.442 6.442 15 N -0.315 5.315 16 C -0.003 4.003 17 C -0.153 4.153 18 C 0.192 3.808 19 O -0.395 6.395 20 C -0.594 4.594 21 H 0.088 0.912 22 C -0.174 4.174 23 N -0.553 5.553 24 Si 0.791 3.209 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.194 1.194 28 C -0.015 4.015 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.253 0.747 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.104 0.896 50 H 0.223 0.777 51 H 0.080 0.920 52 H 0.077 0.923 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.449 -22.280 -10.004 25.260 hybrid contribution 0.725 1.894 -0.529 2.096 sum -5.724 -20.387 -10.533 23.650 Atomic orbital electron populations 1.21801 0.96116 1.01777 1.01643 1.21517 0.95730 0.96597 1.02229 1.21723 0.95459 0.97129 1.02002 1.21584 0.95173 0.94164 1.03403 1.21445 0.96407 0.97658 0.95451 0.89763 1.21621 0.94620 1.01258 0.98751 1.21790 1.01276 1.01728 0.95930 1.21804 1.00947 0.78058 0.99485 1.45794 1.60088 1.11213 1.16996 1.19779 0.80105 0.86385 0.84215 1.90718 1.42194 1.74592 1.33288 1.20283 0.80750 0.87811 0.82766 1.90696 1.44450 1.75487 1.33568 1.48712 1.56096 1.11723 1.14945 1.22147 0.97891 0.97090 0.83130 1.22767 0.98822 0.94576 0.99130 1.19918 0.81740 0.92267 0.86828 1.86126 1.17473 1.66332 1.69598 1.21721 1.14712 0.91235 1.31683 0.91176 1.25826 0.94328 1.03672 0.93578 1.69818 1.17287 1.35376 1.32849 0.85489 0.78043 0.78904 0.78478 1.19628 1.21092 1.19414 1.23051 0.99668 0.77386 1.01432 0.92379 0.93263 0.92765 0.91465 0.92049 0.92539 0.91855 0.89833 0.91407 0.92959 0.91577 0.92458 0.92855 0.91445 0.91291 0.90589 0.74671 0.89762 0.91302 0.88883 0.89614 0.77729 0.92034 0.92327 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.29 5.93 30.60 0.18 -1.11 16 3 C -0.13 -1.44 5.02 30.60 0.15 -1.29 16 4 C -0.11 -1.11 4.56 30.59 0.14 -0.97 16 5 C -0.09 -1.21 1.88 -10.79 -0.02 -1.23 16 6 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 7 C -0.12 -1.74 5.33 30.60 0.16 -1.58 16 8 C -0.15 -1.72 9.50 71.98 0.68 -1.03 16 9 C 0.12 2.26 4.94 86.38 0.43 2.69 16 10 N -0.69 -17.22 5.23 -464.41 -2.43 -19.65 16 11 C 0.52 17.19 7.86 87.27 0.69 17.87 16 12 O -0.53 -18.85 14.12 -3.24 -0.05 -18.90 16 13 C 0.50 20.36 7.91 87.27 0.69 21.05 16 14 O -0.56 -25.03 16.73 -3.24 -0.05 -25.08 16 15 N -0.58 -25.03 3.33 -813.35 -2.71 -27.74 16 16 C 0.12 4.55 5.48 86.73 0.48 5.02 16 17 C -0.12 -4.61 6.15 31.87 0.20 -4.42 16 18 C 0.23 11.36 0.87 -10.07 -0.01 11.35 16 19 O -0.59 -30.46 13.16 -148.98 -1.96 -32.42 16 20 C -0.56 -28.70 8.28 25.60 0.21 -28.49 16 21 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 22 C 0.03 1.40 5.29 84.66 0.45 1.85 16 23 N -0.91 -49.06 10.69 21.45 0.23 -48.83 16 24 Si 0.97 41.31 29.54 68.60 2.03 43.34 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 26 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 C 0.11 5.21 5.39 86.85 0.47 5.68 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.77 6.43 -2.39 -0.02 0.75 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.72 6.47 -2.39 -0.02 0.70 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.88 7.07 -2.39 -0.02 0.86 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.62 6.79 -2.39 -0.02 0.60 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.47 6.35 -2.38 -0.02 1.45 16 45 H 0.42 9.79 7.12 -92.71 -0.66 9.13 16 46 H 0.08 2.88 7.70 -2.39 -0.02 2.86 16 47 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 48 H 0.09 3.42 8.03 -2.39 -0.02 3.40 16 49 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 50 H 0.37 20.03 7.56 -74.06 -0.56 19.47 16 51 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 52 H 0.06 3.22 7.33 -2.38 -0.02 3.20 16 53 H 0.06 2.81 8.03 -2.38 -0.02 2.79 16 Total: -1.00 -61.20 416.82 0.35 -60.84 By element: Atomic # 1 Polarization: 44.37 SS G_CDS: -0.32 Total: 44.05 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: 5.61 Total: 24.39 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -4.90 Total: -96.22 kcal Atomic # 8 Polarization: -74.35 SS G_CDS: -2.06 Total: -76.41 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -61.20 0.35 -60.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118204936.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.904 kcal (2) G-P(sol) polarization free energy of solvation -61.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds