Wall clock time and date at job start Sat Apr 11 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47084 * 2 1 4 4 C 1.53004 * 109.47043 * 120.00064 * 2 1 3 5 5 C 1.52990 * 109.47381 * 78.12874 * 4 2 1 6 6 C 1.52998 * 109.47459 * 60.15110 * 5 4 2 7 7 C 1.53008 * 109.47227 * 300.15313 * 5 4 2 8 8 C 1.52999 * 109.47418 * 180.15377 * 5 4 2 9 9 N 1.46494 * 109.47533 * 179.97438 * 8 5 4 10 10 C 1.34776 * 120.00618 * 180.02562 * 9 8 5 11 11 O 1.21356 * 119.99399 * 359.97438 * 10 9 8 12 12 C 1.49445 * 120.00474 * 180.02562 * 10 9 8 13 13 O 1.21343 * 120.00062 * 359.97438 * 12 10 9 14 14 N 1.34781 * 119.99961 * 179.97438 * 12 10 9 15 15 C 1.47022 * 125.64770 * 359.69330 * 14 12 10 16 16 C 1.54330 * 107.26448 * 178.84736 * 15 14 12 17 17 C 1.55158 * 103.02412 * 338.14097 * 16 15 14 18 18 O 1.42898 * 111.00019 * 277.23249 * 17 16 15 19 19 C 1.50696 * 111.04298 * 153.39355 * 17 16 15 20 20 H 1.08010 * 119.99646 * 6.33415 * 19 17 16 21 21 C 1.37875 * 120.00311 * 186.33271 * 19 17 16 22 22 N 1.31518 * 119.99827 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00024 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47150 * 59.99587 * 23 21 19 25 25 H 1.48497 * 109.47183 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47196 * 300.00029 * 23 21 19 27 27 C 1.47426 * 125.64858 * 179.97438 * 14 12 10 28 28 H 1.09009 * 109.47025 * 287.67633 * 1 2 3 29 29 H 1.08994 * 109.47297 * 47.67677 * 1 2 3 30 30 H 1.08997 * 109.47357 * 167.68241 * 1 2 3 31 31 H 1.08996 * 109.46879 * 239.99463 * 2 1 3 32 32 H 1.09005 * 109.47260 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47150 * 299.99867 * 3 2 1 34 34 H 1.08998 * 109.47441 * 59.99505 * 3 2 1 35 35 H 1.09005 * 109.46855 * 318.12658 * 4 2 1 36 36 H 1.08996 * 109.46537 * 198.13052 * 4 2 1 37 37 H 1.09000 * 109.47527 * 180.02562 * 6 5 4 38 38 H 1.09004 * 109.47262 * 300.00375 * 6 5 4 39 39 H 1.08999 * 109.46886 * 59.99733 * 6 5 4 40 40 H 1.09005 * 109.46635 * 322.25637 * 7 5 4 41 41 H 1.08995 * 109.46994 * 82.25685 * 7 5 4 42 42 H 1.08999 * 109.46946 * 202.26218 * 7 5 4 43 43 H 1.08998 * 109.47147 * 299.99914 * 8 5 4 44 44 H 1.09005 * 109.47188 * 59.99747 * 8 5 4 45 45 H 0.97001 * 120.00188 * 359.97438 * 9 8 5 46 46 H 1.09000 * 109.87942 * 298.38902 * 15 14 12 47 47 H 1.08997 * 109.88344 * 59.55823 * 15 14 12 48 48 H 1.08994 * 110.85176 * 219.67130 * 16 15 14 49 49 H 1.09004 * 110.51910 * 96.45252 * 16 15 14 50 50 H 0.96702 * 114.00054 * 173.64627 * 18 17 16 51 51 H 0.96992 * 119.99647 * 180.02562 * 22 21 19 52 52 H 1.09004 * 110.36564 * 322.93439 * 27 14 12 53 53 H 1.09004 * 110.36089 * 85.14416 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.9302 -2.2336 1.0456 6 6 2.7759 -2.6486 -0.1600 7 6 0.4682 -2.6100 0.7967 8 6 2.4366 -2.9548 2.2963 9 7 2.3310 -4.4029 2.1015 10 6 2.7214 -5.2447 3.0790 11 8 3.1609 -4.8030 4.1203 12 6 2.6142 -6.7219 2.8800 13 8 2.1751 -7.1636 1.8386 14 7 3.0051 -7.5637 3.8573 15 6 3.5586 -7.1660 5.1600 16 6 3.8318 -8.4598 5.9558 17 6 2.8978 -9.4939 5.2734 18 8 1.5679 -9.4007 5.7880 19 6 3.4362 -10.8931 5.4264 20 1 4.3039 -11.0732 6.0437 21 6 2.8211 -11.9431 4.7783 22 7 1.7642 -11.7237 4.0270 23 14 3.4882 -13.6776 4.9685 24 1 3.4503 -14.0682 6.4008 25 1 2.6547 -14.6180 4.1772 26 1 4.8895 -13.7254 4.4793 27 6 2.9539 -9.0357 3.7949 28 1 -0.3633 0.3121 0.9792 29 1 -0.3633 0.6919 -0.7598 30 1 -0.3634 -1.0040 -0.2192 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.4396 -0.4260 2.1098 36 1 3.0818 -0.4528 1.4238 37 1 2.6974 -3.7260 -0.3054 38 1 2.4152 -2.1348 -1.0511 39 1 3.8175 -2.3805 0.0173 40 1 -0.1771 -1.9950 1.4241 41 1 0.2231 -2.4414 -0.2519 42 1 0.3171 -3.6615 1.0407 43 1 3.4782 -2.6868 2.4736 44 1 1.8341 -2.6592 3.1552 45 1 1.9793 -4.7560 1.2693 46 1 4.4875 -6.6144 5.0153 47 1 2.8380 -6.5485 5.6961 48 1 3.5657 -8.3334 7.0052 49 1 4.8756 -8.7574 5.8548 50 1 0.9273 -9.9582 5.3256 51 1 1.3313 -12.4625 3.5714 52 1 2.0606 -9.3620 3.2624 53 1 3.8482 -9.4260 3.3089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118220799.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:45 Heat of formation + Delta-G solvation = -149.568786 kcal Electronic energy + Delta-G solvation = -30916.040654 eV Core-core repulsion = 26786.592606 eV Total energy + Delta-G solvation = -4129.448048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87786 -40.45407 -39.46613 -38.85365 -36.50616 -35.85988 -34.24530 -33.58540 -31.95612 -29.73501 -29.23837 -28.43411 -27.79075 -27.20083 -26.89795 -25.02258 -23.23499 -21.57442 -21.21531 -21.03529 -19.72834 -19.13956 -18.70229 -18.00115 -17.33182 -17.08335 -16.76166 -16.45564 -16.30390 -16.03188 -15.75053 -15.39206 -14.91162 -14.89006 -14.67696 -14.61471 -14.38738 -14.19347 -13.97936 -13.84059 -13.52419 -13.35158 -13.27955 -12.94166 -12.82593 -12.82027 -12.69175 -12.54519 -12.44682 -12.44335 -12.35913 -12.26818 -12.11424 -11.74584 -11.66280 -11.44275 -11.22004 -11.14634 -11.02251 -10.74173 -10.57024 -10.35218 -10.29064 -9.65188 -8.25222 -6.42151 0.33760 1.28125 1.45232 1.46319 1.53873 2.11645 2.37567 2.52613 3.00636 3.31973 3.56490 3.76668 3.80013 3.82988 4.05134 4.14282 4.17137 4.20369 4.30811 4.31718 4.50786 4.59546 4.63163 4.65463 4.72688 4.76562 4.83716 4.86894 4.88032 4.96452 4.96997 5.01730 5.05157 5.10077 5.12574 5.14687 5.15275 5.21361 5.25045 5.32726 5.34472 5.42931 5.45427 5.46398 5.58406 5.65890 5.74020 5.97817 6.06810 6.36279 6.61023 6.67554 6.91922 7.26218 7.34494 8.80284 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029319 B = 0.002097 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.772460 B =13349.298761 C =13704.815246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.098 4.098 5 C -0.066 4.066 6 C -0.148 4.148 7 C -0.153 4.153 8 C 0.126 3.874 9 N -0.685 5.685 10 C 0.515 3.485 11 O -0.531 6.531 12 C 0.501 3.499 13 O -0.562 6.562 14 N -0.583 5.583 15 C 0.120 3.880 16 C -0.115 4.115 17 C 0.233 3.767 18 O -0.588 6.588 19 C -0.556 4.556 20 H 0.070 0.930 21 C 0.027 3.973 22 N -0.914 5.914 23 Si 0.966 3.034 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.269 1.269 27 C 0.107 3.893 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.415 0.585 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.374 0.626 51 H 0.270 0.730 52 H 0.058 0.942 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 23.091 -8.411 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.136 4.136 5 C -0.066 4.066 6 C -0.205 4.205 7 C -0.210 4.210 8 C 0.004 3.996 9 N -0.339 5.339 10 C 0.295 3.705 11 O -0.408 6.408 12 C 0.284 3.716 13 O -0.442 6.442 14 N -0.315 5.315 15 C -0.002 4.002 16 C -0.153 4.153 17 C 0.193 3.807 18 O -0.395 6.395 19 C -0.594 4.594 20 H 0.088 0.912 21 C -0.174 4.174 22 N -0.553 5.553 23 Si 0.791 3.209 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.194 1.194 27 C -0.015 4.015 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.254 0.746 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.223 0.777 51 H 0.080 0.920 52 H 0.077 0.923 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.714 23.599 -7.961 24.916 hybrid contribution -0.360 -1.835 -0.743 2.012 sum 0.354 21.764 -8.704 23.442 Atomic orbital electron populations 1.22379 0.95282 1.03088 1.01557 1.21172 0.96015 0.96053 0.98230 1.21856 1.00952 0.95895 1.01736 1.21672 1.01943 0.91499 0.98440 1.20756 0.96253 0.96030 0.93580 1.22033 0.99837 1.01054 0.97608 1.22339 0.94861 1.00798 1.02955 1.21702 1.02072 0.76824 0.99022 1.45821 1.62649 1.07177 1.18290 1.19777 0.79421 0.86696 0.84615 1.90719 1.44918 1.78216 1.26954 1.20276 0.79765 0.88088 0.83473 1.90693 1.47170 1.78936 1.27410 1.48713 1.58578 1.08085 1.16102 1.22157 0.98905 0.97053 0.82124 1.22727 0.99958 0.92806 0.99826 1.19861 0.80949 0.93040 0.86888 1.86125 1.20798 1.69971 1.62633 1.21723 1.14754 0.92235 1.30663 0.91175 1.25823 0.94753 1.03324 0.93483 1.69815 1.20919 1.33774 1.30820 0.85490 0.78443 0.78721 0.78265 1.19640 1.21085 1.19408 1.23050 1.00681 0.75889 1.01920 0.93019 0.93074 0.90709 0.90372 0.92625 0.92577 0.92899 0.91440 0.91267 0.93406 0.90383 0.92164 0.91349 0.90165 0.94029 0.90809 0.91173 0.74626 0.89726 0.91291 0.89625 0.88909 0.77715 0.92030 0.92327 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 7.99 71.98 0.58 -1.10 16 2 C -0.10 -0.96 2.68 -10.79 -0.03 -0.99 16 3 C -0.15 -1.39 9.08 71.98 0.65 -0.73 16 4 C -0.10 -1.09 3.88 30.59 0.12 -0.97 16 5 C -0.07 -0.89 0.56 -52.18 -0.03 -0.92 16 6 C -0.15 -1.96 7.90 71.98 0.57 -1.39 16 7 C -0.15 -2.10 6.86 71.98 0.49 -1.61 16 8 C 0.13 2.41 4.56 86.38 0.39 2.81 16 9 N -0.69 -17.26 4.71 -464.42 -2.19 -19.44 16 10 C 0.51 17.19 7.86 87.27 0.69 17.87 16 11 O -0.53 -18.85 14.12 -3.26 -0.05 -18.90 16 12 C 0.50 20.36 7.91 87.27 0.69 21.05 16 13 O -0.56 -25.03 16.73 -3.22 -0.05 -25.08 16 14 N -0.58 -25.02 3.33 -813.39 -2.71 -27.73 16 15 C 0.12 4.55 5.49 86.73 0.48 5.03 16 16 C -0.12 -4.62 6.13 31.79 0.19 -4.43 16 17 C 0.23 11.37 0.87 -10.16 -0.01 11.36 16 18 O -0.59 -30.46 13.16 -148.98 -1.96 -32.42 16 19 C -0.56 -28.71 8.27 25.60 0.21 -28.50 16 20 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 21 C 0.03 1.41 5.29 84.65 0.45 1.86 16 22 N -0.91 -49.02 10.69 21.45 0.23 -48.79 16 23 Si 0.97 41.28 29.54 68.60 2.03 43.31 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 C 0.11 5.21 5.38 86.85 0.47 5.67 16 28 H 0.05 0.54 7.88 -2.38 -0.02 0.52 16 29 H 0.05 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.07 0.74 4.32 -2.39 -0.01 0.73 16 31 H 0.08 0.76 5.70 -2.39 -0.01 0.75 16 32 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.77 7.81 -2.38 -0.02 0.75 16 36 H 0.07 0.75 8.01 -2.39 -0.02 0.73 16 37 H 0.05 0.74 6.86 -2.39 -0.02 0.73 16 38 H 0.08 0.83 6.07 -2.38 -0.01 0.81 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.89 6.90 -2.38 -0.02 0.87 16 41 H 0.08 0.92 6.08 -2.39 -0.01 0.90 16 42 H 0.04 0.71 6.54 -2.39 -0.02 0.70 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.42 9.98 5.78 -92.71 -0.54 9.45 16 46 H 0.08 2.89 7.71 -2.39 -0.02 2.87 16 47 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 48 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 49 H 0.09 3.41 8.03 -2.38 -0.02 3.39 16 50 H 0.37 20.03 7.56 -74.06 -0.56 19.47 16 51 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 52 H 0.06 3.21 7.33 -2.38 -0.02 3.20 16 53 H 0.06 2.80 8.03 -2.39 -0.02 2.78 16 Total: -1.00 -60.97 403.66 1.04 -59.93 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -0.17 Total: 44.11 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 5.91 Total: 25.02 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -4.66 Total: -95.96 kcal Atomic # 8 Polarization: -74.34 SS G_CDS: -2.06 Total: -76.40 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -60.97 1.04 -59.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118220799.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.641 kcal (2) G-P(sol) polarization free energy of solvation -60.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds