Wall clock time and date at job start Sat Apr 11 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 C 1.53000 * 109.47382 * 239.99675 * 2 1 3 5 5 C 1.52999 * 109.47029 * 294.99780 * 4 2 1 6 6 H 1.09000 * 109.47214 * 55.00018 * 5 4 2 7 7 C 1.53004 * 109.47059 * 174.99691 * 5 4 2 8 8 O 1.42907 * 109.46807 * 55.06983 * 7 5 4 9 9 N 1.46500 * 109.47283 * 294.99514 * 5 4 2 10 10 C 1.46495 * 120.00341 * 302.15821 * 9 5 4 11 11 C 1.34778 * 119.99585 * 122.15074 * 9 5 4 12 12 O 1.21347 * 120.00107 * 4.55520 * 11 9 5 13 13 C 1.49446 * 119.99725 * 184.54680 * 11 9 5 14 14 O 1.21344 * 119.99937 * 84.84408 * 13 11 9 15 15 N 1.34777 * 120.00049 * 264.83747 * 13 11 9 16 16 C 1.46922 * 120.63240 * 4.84515 * 15 13 11 17 17 C 1.53190 * 108.77934 * 233.58488 * 16 15 13 18 18 C 1.53046 * 109.30790 * 305.36236 * 17 16 15 19 19 C 1.53038 * 109.53788 * 61.36446 * 18 17 16 20 20 H 1.08999 * 109.49593 * 58.58650 * 19 18 17 21 21 C 1.50700 * 109.49826 * 178.68120 * 19 18 17 22 22 H 1.07999 * 119.99757 * 359.97438 * 21 19 18 23 23 C 1.37877 * 119.99933 * 180.02562 * 21 19 18 24 24 N 1.31511 * 120.00357 * 359.97438 * 23 21 19 25 25 Si 1.86800 * 119.99748 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47206 * 89.99860 * 25 23 21 27 27 H 1.48500 * 109.47295 * 209.99730 * 25 23 21 28 28 H 1.48500 * 109.47409 * 329.99841 * 25 23 21 29 29 C 1.46925 * 120.63031 * 184.55901 * 15 13 11 30 30 H 1.09001 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47184 * 60.00385 * 1 2 3 32 32 H 1.09000 * 109.47091 * 300.00053 * 1 2 3 33 33 H 1.09005 * 109.47338 * 119.99490 * 2 1 3 34 34 H 1.08997 * 109.47248 * 59.99489 * 3 2 1 35 35 H 1.09002 * 109.47509 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.46623 * 299.99390 * 3 2 1 37 37 H 1.09001 * 109.47011 * 55.00350 * 4 2 1 38 38 H 1.09001 * 109.47229 * 174.99708 * 4 2 1 39 39 H 1.08995 * 109.46948 * 175.06754 * 7 5 4 40 40 H 1.08997 * 109.47497 * 295.07475 * 7 5 4 41 41 H 0.96698 * 113.99580 * 180.02562 * 8 7 5 42 42 H 1.09006 * 109.46836 * 25.45737 * 10 9 5 43 43 H 1.09001 * 109.47575 * 145.45877 * 10 9 5 44 44 H 1.09004 * 109.46865 * 265.46176 * 10 9 5 45 45 H 1.09007 * 109.58733 * 353.37305 * 16 15 13 46 46 H 1.09007 * 109.59144 * 113.64928 * 16 15 13 47 47 H 1.08998 * 109.50126 * 65.31012 * 17 16 15 48 48 H 1.08999 * 109.49816 * 185.41565 * 17 16 15 49 49 H 1.09007 * 109.45657 * 181.38539 * 18 17 16 50 50 H 1.08995 * 109.45792 * 301.35747 * 18 17 16 51 51 H 0.96999 * 120.00330 * 180.02562 * 24 23 21 52 52 H 1.08995 * 109.59242 * 246.20655 * 29 15 13 53 53 H 1.08997 * 109.58666 * 6.63679 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 -2.1955 -1.1878 6 1 0.5564 -2.2708 -1.0526 7 6 2.0354 -2.8890 -2.4917 8 8 3.4311 -2.6918 -2.7271 9 7 2.3149 -2.8421 -0.0624 10 6 3.7779 -2.8333 0.0128 11 6 1.5940 -3.4448 0.9038 12 8 0.3876 -3.5245 0.8003 13 6 2.2805 -4.0153 2.1024 14 8 2.5398 -3.3025 3.0496 15 7 2.6115 -5.3214 2.1314 16 6 2.4007 -6.1735 0.9532 17 6 1.5778 -7.3965 1.3699 18 6 2.2728 -8.0999 2.5380 19 6 2.3590 -7.1461 3.7317 20 1 1.3560 -6.8293 4.0174 21 6 3.0144 -7.8502 4.8918 22 1 3.3369 -8.8757 4.7887 23 6 3.2012 -7.1854 6.0852 24 7 2.8080 -5.9367 6.2110 25 14 4.0129 -8.0583 7.5234 26 1 5.4821 -7.8504 7.4634 27 1 3.4866 -7.5072 8.7980 28 1 3.7154 -9.5115 7.4523 29 6 3.1960 -5.9189 3.3397 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6054 -0.2618 -2.1369 38 1 3.1263 -0.6443 -1.2951 39 1 1.8272 -3.9560 -2.4144 40 1 1.4643 -2.4662 -3.3182 41 1 3.7551 -3.1049 -3.5391 42 1 4.1648 -1.9758 -0.5379 43 1 4.0877 -2.7653 1.0556 44 1 4.1696 -3.7522 -0.4235 45 1 1.8616 -5.6135 0.1890 46 1 3.3641 -6.4960 0.5582 47 1 0.5821 -7.0774 1.6780 48 1 1.4958 -8.0840 0.5281 49 1 1.7021 -8.9846 2.8206 50 1 3.2775 -8.3967 2.2372 51 1 2.9398 -5.4690 7.0504 52 1 4.2228 -6.2232 3.1371 53 1 3.1816 -5.1910 4.1509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118514779.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:55 Heat of formation + Delta-G solvation = -153.988702 kcal Electronic energy + Delta-G solvation = -32476.430530 eV Core-core repulsion = 28346.790820 eV Total energy + Delta-G solvation = -4129.639710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.12769 -40.35717 -38.76750 -38.37069 -36.92920 -35.88831 -35.33301 -33.57245 -31.87824 -31.55926 -28.32367 -27.97974 -27.52735 -26.97005 -26.74767 -24.65635 -23.54993 -22.13138 -21.23165 -20.52078 -19.79287 -19.20220 -18.48917 -18.14780 -17.79102 -17.51196 -16.70537 -16.47625 -16.19130 -15.85550 -15.67448 -15.33686 -15.27277 -15.06629 -14.72087 -14.61759 -14.54359 -14.41250 -14.09659 -13.83355 -13.66084 -13.62044 -13.20325 -13.12775 -13.00917 -12.89533 -12.74860 -12.67565 -12.55764 -12.42097 -12.34169 -12.26734 -11.88233 -11.70603 -11.62581 -11.59529 -11.45251 -11.12490 -10.99410 -10.83640 -10.58163 -10.47334 -9.84486 -9.63226 -8.12143 -6.29477 0.98149 1.14077 1.40708 1.42057 1.46678 1.53471 2.34593 2.43086 3.13090 3.18604 3.44182 3.64202 3.88333 3.93852 3.96368 4.05976 4.14879 4.22323 4.25245 4.32148 4.47123 4.49281 4.55627 4.61337 4.64633 4.69314 4.70694 4.75059 4.75939 4.79888 4.83451 4.92745 4.96203 5.02604 5.04956 5.11314 5.16350 5.20406 5.27824 5.32489 5.34323 5.41564 5.45791 5.47632 5.57075 5.84435 5.93046 5.97203 6.27067 6.32056 6.65425 6.80455 6.88721 7.01292 7.41263 8.91926 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.003183 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.837157 B = 8795.755836 C = 9625.516751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.139 4.139 4 C -0.107 4.107 5 C 0.126 3.874 6 H 0.101 0.899 7 C 0.078 3.922 8 O -0.576 6.576 9 N -0.573 5.573 10 C 0.085 3.915 11 C 0.525 3.475 12 O -0.547 6.547 13 C 0.499 3.501 14 O -0.565 6.565 15 N -0.585 5.585 16 C 0.107 3.893 17 C -0.127 4.127 18 C -0.103 4.103 19 C 0.036 3.964 20 H -0.018 1.018 21 C -0.533 4.533 22 H 0.067 0.933 23 C 0.009 3.991 24 N -0.918 5.918 25 Si 0.960 3.040 26 H -0.272 1.272 27 H -0.290 1.290 28 H -0.262 1.262 29 C 0.125 3.875 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.397 0.603 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.041 0.959 48 H 0.109 0.891 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.260 0.740 52 H 0.056 0.944 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 7.796 -24.924 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.196 4.196 4 C -0.145 4.145 5 C 0.024 3.976 6 H 0.119 0.881 7 C 0.000 4.000 8 O -0.384 6.384 9 N -0.306 5.306 10 C -0.057 4.057 11 C 0.307 3.693 12 O -0.425 6.425 13 C 0.282 3.718 14 O -0.444 6.444 15 N -0.318 5.318 16 C -0.015 4.015 17 C -0.165 4.165 18 C -0.140 4.140 19 C 0.017 3.983 20 H 0.000 1.000 21 C -0.571 4.571 22 H 0.085 0.915 23 C -0.190 4.190 24 N -0.557 5.557 25 Si 0.785 3.215 26 H -0.197 1.197 27 H -0.217 1.217 28 H -0.186 1.186 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.248 0.752 42 H 0.125 0.875 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.060 0.940 48 H 0.127 0.873 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.069 0.931 52 H 0.074 0.926 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.230 8.585 -23.828 25.357 hybrid contribution 0.078 -0.520 1.381 1.478 sum 1.307 8.066 -22.447 23.888 Atomic orbital electron populations 1.21875 0.95326 1.01164 1.02106 1.21121 0.95988 0.97154 0.97980 1.21760 1.01010 0.94690 1.02137 1.21864 1.02540 0.92002 0.98108 1.21731 0.98245 0.93369 0.84249 0.88076 1.22376 0.83539 0.98922 0.95193 1.86456 1.23143 1.79888 1.48927 1.47883 1.08208 1.53002 1.21504 1.21928 0.77350 1.05163 1.01262 1.20093 0.87283 0.79157 0.82767 1.90725 1.14371 1.59894 1.77519 1.20696 0.79184 0.83562 0.88394 1.90773 1.55105 1.60280 1.38228 1.48603 1.59147 1.07664 1.16352 1.22007 1.01785 0.91930 0.85761 1.21910 0.98063 0.96901 0.99604 1.21513 1.00399 0.97810 0.94304 1.19016 0.93635 0.92063 0.93605 1.00023 1.21494 1.39768 0.98970 0.96868 0.91484 1.25924 0.96024 0.95427 1.01647 1.70090 1.47566 1.11586 1.26455 0.85520 0.78712 0.79016 0.78206 1.19738 1.21654 1.18629 1.22002 0.95485 0.97554 0.84607 0.94058 0.90334 0.93932 0.94970 0.93563 0.92465 0.90845 0.88190 0.90069 0.93349 0.89765 0.75225 0.87457 0.94139 0.90272 0.90071 0.88032 0.94032 0.87274 0.92640 0.91329 0.93118 0.92569 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.95 71.98 0.64 -2.65 16 2 C -0.10 -2.28 2.86 -10.80 -0.03 -2.31 16 3 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 4 C -0.11 -1.80 3.80 30.59 0.12 -1.69 16 5 C 0.13 2.48 2.41 44.99 0.11 2.59 16 6 H 0.10 2.36 5.12 -2.39 -0.01 2.34 16 7 C 0.08 0.95 6.81 71.98 0.49 1.44 16 8 O -0.58 -5.80 10.71 -148.98 -1.60 -7.40 16 9 N -0.57 -15.11 2.13 -824.17 -1.76 -16.86 16 10 C 0.08 1.96 8.57 127.77 1.10 3.06 16 11 C 0.52 19.21 5.45 87.27 0.48 19.69 16 12 O -0.55 -22.41 16.44 -3.24 -0.05 -22.46 16 13 C 0.50 22.20 5.75 87.27 0.50 22.70 16 14 O -0.56 -30.40 16.38 -3.23 -0.05 -30.45 16 15 N -0.59 -24.43 2.97 -819.66 -2.43 -26.86 16 16 C 0.11 3.26 6.35 86.36 0.55 3.81 16 17 C -0.13 -3.99 6.08 30.67 0.19 -3.80 16 18 C -0.10 -3.94 5.10 30.62 0.16 -3.78 16 19 C 0.04 1.83 2.26 -11.32 -0.03 1.81 16 20 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 21 C -0.53 -29.13 8.56 25.60 0.22 -28.91 16 22 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 23 C 0.01 0.51 5.30 84.66 0.45 0.96 16 24 N -0.92 -56.42 11.41 21.45 0.24 -56.18 16 25 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 29 C 0.12 6.22 5.42 86.51 0.47 6.69 16 30 H 0.04 1.09 6.46 -2.39 -0.02 1.08 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.03 0.97 7.62 -2.38 -0.02 0.95 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.34 5.98 -2.39 -0.01 1.33 16 39 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.40 0.69 9.12 -74.06 -0.68 0.02 16 42 H 0.11 2.03 5.57 -2.38 -0.01 2.01 16 43 H 0.04 1.19 6.86 -2.39 -0.02 1.17 16 44 H 0.08 1.57 8.11 -2.38 -0.02 1.55 16 45 H 0.08 2.25 6.31 -2.38 -0.02 2.24 16 46 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 47 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 50 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 51 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 52 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 53 H 0.08 4.61 5.18 -2.39 -0.01 4.60 16 Total: -1.00 -78.53 408.30 2.67 -75.86 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.22 Total: 20.34 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.07 Total: 17.79 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -3.94 Total: -99.90 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -1.70 Total: -60.31 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -78.53 2.67 -75.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118514779.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.127 kcal (2) G-P(sol) polarization free energy of solvation -78.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds