Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47520 * 2 1 4 4 C 1.50705 * 109.53909 * 304.95783 * 3 2 1 5 5 O 1.21277 * 119.99967 * 113.52142 * 4 3 2 6 6 N 1.34777 * 119.99729 * 293.51615 * 4 3 2 7 7 C 1.46505 * 119.99632 * 174.63453 * 6 4 3 8 8 C 1.53000 * 109.46983 * 180.27795 * 7 6 4 9 9 H 1.08995 * 108.56869 * 60.00056 * 8 7 6 10 10 C 1.46923 * 108.61916 * 177.94402 * 8 7 6 11 11 N 1.50101 * 106.78184 * 178.04099 * 10 8 7 12 12 C 1.36934 * 120.74693 * 111.18003 * 11 10 8 13 13 H 1.08004 * 120.00360 * 146.24639 * 12 11 10 14 14 C 1.38817 * 120.00090 * 326.24219 * 12 11 10 15 15 N 1.31613 * 120.00087 * 0.05099 * 14 12 11 16 16 Si 1.86800 * 119.99932 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47226 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47219 * 119.99959 * 16 14 12 19 19 H 1.48503 * 109.47132 * 240.00232 * 16 14 12 20 20 C 1.43417 * 118.61651 * 291.15220 * 11 10 8 21 21 C 1.55333 * 116.23738 * 89.40702 * 20 11 10 22 22 C 1.55184 * 108.87192 * 319.46605 * 21 20 11 23 23 O 1.39640 * 110.57147 * 322.14390 * 22 21 20 24 24 C 1.53171 * 109.61761 * 65.17686 * 3 2 1 25 25 C 1.53092 * 109.16391 * 176.89433 * 24 3 2 26 26 O 1.42907 * 109.41533 * 302.38979 * 25 24 3 27 27 C 1.42902 * 114.09391 * 61.16128 * 26 25 24 28 28 C 1.53093 * 109.41505 * 298.83789 * 27 26 25 29 29 H 1.08997 * 109.46979 * 64.87086 * 1 2 3 30 30 H 1.08997 * 109.47369 * 184.87338 * 1 2 3 31 31 H 1.09000 * 109.47118 * 304.87174 * 1 2 3 32 32 H 1.09002 * 109.47347 * 239.99702 * 2 1 3 33 33 H 1.09005 * 109.47003 * 119.99759 * 2 1 3 34 34 H 0.96999 * 120.00687 * 354.91139 * 6 4 3 35 35 H 1.09005 * 109.47010 * 300.27839 * 7 6 4 36 36 H 1.09000 * 109.46866 * 60.27980 * 7 6 4 37 37 H 1.08997 * 109.99084 * 297.23993 * 10 8 7 38 38 H 1.08997 * 109.99083 * 58.60275 * 10 8 7 39 39 H 0.96994 * 120.00376 * 180.02562 * 15 14 12 40 40 H 1.09003 * 108.13134 * 327.65090 * 20 11 10 41 41 H 1.09002 * 107.96639 * 211.03718 * 20 11 10 42 42 H 1.08998 * 109.57176 * 199.64768 * 21 20 11 43 43 H 1.08998 * 109.56871 * 79.28235 * 21 20 11 44 44 H 1.09004 * 109.26004 * 201.86143 * 22 21 20 45 45 H 1.08998 * 109.25923 * 82.42457 * 22 21 20 46 46 H 1.09001 * 109.52919 * 296.79894 * 24 3 2 47 47 H 1.08998 * 109.52400 * 56.98826 * 24 3 2 48 48 H 1.09001 * 109.48161 * 182.41014 * 25 24 3 49 49 H 1.08994 * 109.49371 * 62.38117 * 25 24 3 50 50 H 1.08993 * 109.48025 * 178.85884 * 27 26 25 51 51 H 1.09002 * 109.49092 * 58.82657 * 27 26 25 52 52 H 1.08993 * 109.52732 * 297.71021 * 28 27 26 53 53 H 1.09005 * 109.52545 * 177.51266 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4409 2.1889 -1.1640 5 8 0.6631 3.0981 -0.9657 6 7 1.7695 1.8462 -2.4254 7 6 1.0999 2.4912 -3.5577 8 6 1.6486 1.9206 -4.8670 9 1 1.4579 0.8476 -4.8849 10 6 0.9307 2.5434 -5.9874 11 7 1.5324 1.9926 -7.2474 12 6 0.8161 1.1505 -8.0554 13 1 0.9571 1.1794 -9.1258 14 6 -0.0912 0.2595 -7.4987 15 7 -0.2638 0.2249 -6.1944 16 14 -1.0679 -0.8897 -8.6009 17 1 -0.6930 -0.6535 -10.0183 18 1 -0.7681 -2.2980 -8.2371 19 1 -2.5194 -0.6309 -8.4236 20 6 2.8741 2.3671 -7.5886 21 6 4.0038 1.4595 -7.0291 22 6 3.6527 1.0625 -5.5706 23 8 3.0560 2.1328 -4.9009 24 6 1.6404 2.1292 1.3095 25 6 2.2217 3.5453 1.3320 26 8 3.6416 3.4783 1.1852 27 6 4.0740 2.8885 -0.0426 28 6 3.5671 1.4460 -0.1203 29 1 -0.3633 0.4364 -0.9304 30 1 -0.3634 -1.0239 0.0873 31 1 -0.3633 0.5876 0.8431 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.4464 1.1697 -2.5835 35 1 0.0277 2.3035 -3.5006 36 1 1.2831 3.5651 -3.5243 37 1 -0.1279 2.2881 -5.9396 38 1 1.0559 3.6256 -5.9547 39 1 -0.8975 -0.3979 -5.8053 40 1 3.0450 3.3818 -7.2289 41 1 2.9543 2.3771 -8.6756 42 1 4.9487 2.0026 -7.0423 43 1 4.0880 0.5619 -7.6417 44 1 4.5643 0.7742 -5.0471 45 1 2.9640 0.2178 -5.5838 46 1 0.5537 2.1805 1.3772 47 1 2.0324 1.5611 2.1531 48 1 1.9766 4.0238 2.2802 49 1 1.7984 4.1253 0.5121 50 1 5.1631 2.8938 -0.0847 51 1 3.6749 3.4597 -0.8808 52 1 3.9979 0.8641 0.6944 53 1 3.8582 1.0085 -1.0754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150519154.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -127.796032 kcal Electronic energy + Delta-G solvation = -32985.616201 eV Core-core repulsion = 28857.112291 eV Total energy + Delta-G solvation = -4128.503910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03758 -40.63969 -39.09350 -36.78238 -36.45783 -35.98830 -33.84159 -32.99807 -32.17733 -31.59929 -30.28044 -27.56486 -27.05241 -26.31406 -24.68400 -24.47620 -23.05407 -22.53165 -22.37346 -21.31773 -20.23629 -18.96204 -17.82196 -17.70629 -17.22761 -17.03603 -16.87850 -16.64791 -16.34751 -16.15291 -15.80709 -15.55447 -15.50408 -15.11622 -14.85622 -14.66196 -14.50055 -14.19614 -14.14425 -13.75120 -13.53512 -13.27581 -13.22104 -13.10763 -13.02265 -12.97671 -12.67103 -12.43574 -12.42864 -12.27153 -12.25525 -12.01547 -11.99827 -11.79568 -11.43786 -11.36734 -11.34200 -11.18648 -10.74048 -10.54995 -10.38435 -10.24868 -10.00953 -8.56970 -7.89154 -5.44134 1.45715 1.50107 1.57553 1.66870 2.22642 2.49698 2.93992 3.13433 3.28895 3.48353 3.51872 3.56159 3.74206 3.99609 4.02699 4.18621 4.27020 4.28877 4.29943 4.37923 4.42106 4.46221 4.47832 4.56346 4.57842 4.67510 4.75166 4.78647 4.79161 4.80038 4.83892 4.91876 4.98618 5.02246 5.03638 5.09488 5.11328 5.16219 5.18899 5.20118 5.22472 5.34703 5.37283 5.42815 5.48287 5.56213 5.66918 6.22085 6.42303 6.54405 6.59764 7.13206 7.27097 7.80413 8.37609 9.15243 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.003520 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.111384 B = 7952.712302 C = 8924.420406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C -0.075 4.075 4 C 0.520 3.480 5 O -0.581 6.581 6 N -0.706 5.706 7 C 0.136 3.864 8 C 0.084 3.916 9 H 0.086 0.914 10 C 0.144 3.856 11 N -0.603 5.603 12 C -0.266 4.266 13 H 0.059 0.941 14 C -0.028 4.028 15 N -0.918 5.918 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.289 1.289 19 H -0.294 1.294 20 C 0.156 3.844 21 C -0.164 4.164 22 C 0.069 3.931 23 O -0.368 6.368 24 C -0.125 4.125 25 C 0.050 3.950 26 O -0.394 6.394 27 C 0.054 3.946 28 C -0.139 4.139 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.407 0.593 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.014 0.986 39 H 0.252 0.748 40 H 0.030 0.970 41 H 0.028 0.972 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.036 0.964 46 H 0.075 0.925 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.040 0.960 50 H 0.117 0.883 51 H 0.026 0.974 52 H 0.108 0.892 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -1.780 14.346 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.078 4.078 4 C 0.308 3.692 5 O -0.462 6.462 6 N -0.357 5.357 7 C 0.011 3.989 8 C 0.025 3.975 9 H 0.104 0.896 10 C 0.020 3.980 11 N -0.325 5.325 12 C -0.396 4.396 13 H 0.076 0.924 14 C -0.224 4.224 15 N -0.563 5.563 16 Si 0.791 3.209 17 H -0.200 1.200 18 H -0.216 1.216 19 H -0.221 1.221 20 C 0.028 3.972 21 C -0.205 4.205 22 C -0.009 4.009 23 O -0.287 6.287 24 C -0.163 4.163 25 C -0.027 4.027 26 O -0.314 6.314 27 C -0.023 4.023 28 C -0.177 4.177 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.243 0.757 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.032 0.968 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.054 0.946 46 H 0.093 0.907 47 H 0.118 0.882 48 H 0.125 0.875 49 H 0.058 0.942 50 H 0.135 0.865 51 H 0.044 0.956 52 H 0.126 0.874 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.112 -0.989 14.723 16.839 hybrid contribution -1.058 -0.947 -1.495 2.062 sum 7.053 -1.936 13.228 15.116 Atomic orbital electron populations 1.21840 0.96237 1.02406 1.00928 1.21576 0.95675 0.92417 1.04448 1.21005 0.96956 0.97031 0.92827 1.21021 0.80724 0.82929 0.84511 1.90624 1.37922 1.31955 1.85687 1.45830 1.42055 1.42716 1.05058 1.21305 0.96058 0.96545 0.85030 1.21757 0.80887 1.02076 0.92737 0.89589 1.20659 0.99175 0.92640 0.85533 1.44082 1.09211 1.54148 1.25033 1.19405 1.19303 1.11454 0.89454 0.92350 1.25754 1.01529 0.98389 0.96762 1.69905 1.37928 1.38565 1.09908 0.85296 0.77850 0.78915 0.78830 1.19978 1.21576 1.22083 1.20484 0.84415 0.95571 0.96729 1.23473 0.99414 1.00683 0.96904 1.22389 0.97320 0.88650 0.92507 1.87507 1.19144 1.46079 1.75933 1.22051 1.01915 0.96376 0.95911 1.22768 0.80492 0.96903 1.02487 1.87869 1.22398 1.81888 1.39204 1.22695 1.01124 0.92601 0.85857 1.22309 0.92100 0.98113 1.05157 0.95668 0.91019 0.91995 0.90961 0.87862 0.75743 0.92386 0.93136 0.90077 0.96777 0.93883 0.95137 0.95313 0.90393 0.92658 0.89443 0.94605 0.90671 0.88164 0.87548 0.94181 0.86541 0.95585 0.87398 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 9.35 71.98 0.67 -2.76 16 2 C -0.10 -1.88 4.98 30.59 0.15 -1.72 16 3 C -0.08 -1.61 0.44 -52.81 -0.02 -1.64 16 4 C 0.52 15.74 3.64 87.66 0.32 16.06 16 5 O -0.58 -21.91 14.12 -3.02 -0.04 -21.95 16 6 N -0.71 -21.82 5.29 -463.04 -2.45 -24.27 16 7 C 0.14 5.09 5.25 86.38 0.45 5.54 16 8 C 0.08 3.40 1.94 28.71 0.06 3.45 16 9 H 0.09 3.90 5.10 -2.39 -0.01 3.88 16 10 C 0.14 6.67 4.69 83.79 0.39 7.06 16 11 N -0.60 -28.94 2.60 -706.04 -1.83 -30.78 16 12 C -0.27 -13.85 9.58 84.04 0.81 -13.04 16 13 H 0.06 3.07 7.83 -2.91 -0.02 3.04 16 14 C -0.03 -1.42 5.28 84.86 0.45 -0.97 16 15 N -0.92 -47.52 9.03 21.65 0.20 -47.32 16 16 Si 0.96 42.38 29.55 68.60 2.03 44.41 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 C 0.16 6.45 5.33 87.75 0.47 6.92 16 21 C -0.16 -5.69 6.75 32.14 0.22 -5.47 16 22 C 0.07 2.37 6.38 72.73 0.46 2.84 16 23 O -0.37 -13.62 9.44 -137.19 -1.30 -14.92 16 24 C -0.12 -2.60 4.24 30.68 0.13 -2.47 16 25 C 0.05 1.21 6.56 72.01 0.47 1.68 16 26 O -0.39 -9.76 10.77 -148.98 -1.60 -11.36 16 27 C 0.05 1.17 6.62 72.01 0.48 1.64 16 28 C -0.14 -2.46 4.81 30.69 0.15 -2.31 16 29 H 0.02 0.70 7.28 -2.39 -0.02 0.69 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.30 6.44 -2.39 -0.02 1.28 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.41 11.10 7.15 -92.71 -0.66 10.43 16 35 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 4.19 6.13 -2.39 -0.01 4.17 16 38 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.25 12.81 8.31 -92.71 -0.77 12.04 16 40 H 0.03 1.24 7.98 -2.39 -0.02 1.22 16 41 H 0.03 1.18 7.97 -2.39 -0.02 1.16 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 45 H 0.04 1.43 6.66 -2.39 -0.02 1.41 16 46 H 0.07 1.71 6.44 -2.39 -0.02 1.70 16 47 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.04 1.23 6.05 -2.39 -0.01 1.21 16 50 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.03 0.70 7.38 -2.39 -0.02 0.68 16 52 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.09 1.41 7.07 -2.38 -0.02 1.39 16 Total: -1.00 -61.01 391.58 0.88 -60.13 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.23 Total: 31.27 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 5.65 Total: 14.80 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.09 Total: -102.37 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -2.94 Total: -48.23 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -61.01 0.88 -60.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150519154.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.670 kcal (2) G-P(sol) polarization free energy of solvation -61.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds