Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99664 * 2 1 4 4 O 1.20819 * 120.00424 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99983 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.47236 * 59.99910 * 5 3 2 7 7 C 1.53004 * 109.47294 * 300.00031 * 5 3 2 8 8 C 1.52999 * 109.46795 * 66.77522 * 7 5 3 9 9 C 1.53001 * 109.47356 * 65.01390 * 8 7 5 10 10 C 1.53006 * 109.46907 * 185.01521 * 8 7 5 11 11 N 1.46504 * 109.47443 * 179.97438 * 5 3 2 12 12 C 1.34770 * 119.99952 * 270.60127 * 11 5 3 13 13 O 1.21593 * 120.00286 * 4.97173 * 12 11 5 14 14 N 1.34774 * 119.99821 * 184.96658 * 12 11 5 15 15 C 1.46502 * 119.99818 * 174.50322 * 14 12 11 16 16 C 1.50708 * 109.47180 * 90.00385 * 15 14 12 17 17 H 1.07995 * 119.99482 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00009 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00069 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00203 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46593 * 59.99662 * 20 18 16 22 22 H 1.48489 * 109.47535 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47233 * 300.00267 * 20 18 16 24 24 C 1.46501 * 120.00305 * 354.50570 * 14 12 11 25 25 C 1.54262 * 110.03012 * 57.41892 * 24 14 12 26 26 C 1.54960 * 104.16192 * 217.13880 * 25 24 14 27 27 C 1.54889 * 102.77629 * 37.88978 * 26 25 24 28 28 C 1.53876 * 110.02786 * 300.20790 * 24 14 12 29 29 H 1.08998 * 109.46926 * 299.99950 * 1 2 3 30 30 H 1.09004 * 109.46810 * 60.00156 * 1 2 3 31 31 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47021 * 186.77299 * 7 5 3 33 33 H 1.08994 * 109.47044 * 306.77916 * 7 5 3 34 34 H 1.09001 * 109.47357 * 305.00922 * 8 7 5 35 35 H 1.09002 * 109.46728 * 64.71729 * 9 8 7 36 36 H 1.09008 * 109.46909 * 184.71455 * 9 8 7 37 37 H 1.08997 * 109.47347 * 304.71648 * 9 8 7 38 38 H 1.09001 * 109.47278 * 60.00091 * 10 8 7 39 39 H 1.08998 * 109.47137 * 179.97438 * 10 8 7 40 40 H 1.09000 * 109.47128 * 299.99710 * 10 8 7 41 41 H 0.96999 * 119.99472 * 90.59548 * 11 5 3 42 42 H 1.09001 * 109.47073 * 210.00163 * 15 14 12 43 43 H 1.08997 * 109.47431 * 329.99892 * 15 14 12 44 44 H 0.96997 * 119.99793 * 179.97438 * 19 18 16 45 45 H 1.09002 * 110.01764 * 178.81538 * 24 14 12 46 46 H 1.09001 * 110.49009 * 335.79161 * 25 24 14 47 47 H 1.09002 * 110.47994 * 98.43009 * 25 24 14 48 48 H 1.09000 * 110.72267 * 279.58036 * 26 25 24 49 49 H 1.09000 * 110.92396 * 156.29940 * 26 25 24 50 50 H 1.08998 * 110.48701 * 203.40570 * 27 26 25 51 51 H 1.09000 * 110.59622 * 80.81796 * 27 26 25 52 52 H 1.09000 * 110.03158 * 238.56721 * 28 24 14 53 53 H 1.08998 * 110.03483 * 359.94923 * 28 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9564 0.7807 -0.8892 7 6 4.1129 0.5817 1.2502 8 6 3.8249 -0.9187 1.1681 9 6 4.6018 -1.5239 -0.0028 10 6 4.2587 -1.5932 2.4711 11 7 3.9817 2.6799 -0.0002 12 6 4.1615 3.3289 -1.1676 13 8 3.8924 2.7775 -2.2174 14 7 4.6394 4.5890 -1.1714 15 6 4.9486 5.2512 -2.4411 16 6 3.7273 5.9817 -2.9372 17 1 2.8123 5.9548 -2.3643 18 6 3.7779 6.6832 -4.1231 19 7 4.8922 6.7154 -4.8210 20 14 2.2639 7.5880 -4.7384 21 1 1.8541 8.6050 -3.7369 22 1 2.5773 8.2593 -6.0253 23 1 1.1569 6.6193 -4.9416 24 6 4.8498 5.2966 0.0940 25 6 5.8116 4.4942 0.9944 26 6 5.2529 4.7008 2.4249 27 6 3.7204 4.6739 2.2013 28 6 3.5207 5.4111 0.8610 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 5.1892 0.7421 1.3132 33 1 3.6312 0.9962 2.1357 34 1 2.7571 -1.0759 1.0157 35 1 5.6715 -1.4413 0.1896 36 1 4.3324 -2.5744 -0.1132 37 1 4.3549 -0.9873 -0.9188 38 1 3.7051 -1.1621 3.3053 39 1 4.0530 -2.6621 2.4129 40 1 5.3264 -1.4361 2.6236 41 1 4.1272 3.1430 0.8396 42 1 5.7613 5.9621 -2.2916 43 1 5.2494 4.5049 -3.1764 44 1 4.9276 7.2087 -5.6554 45 1 5.2575 6.2893 -0.0968 46 1 5.7931 3.4378 0.7266 47 1 6.8244 4.8902 0.9188 48 1 5.5677 5.6639 2.8267 49 1 5.5613 3.8895 3.0843 50 1 3.2081 5.2005 3.0064 51 1 3.3614 3.6472 2.1291 52 1 3.2839 6.4593 1.0432 53 1 2.7191 4.9411 0.2913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190791980.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -134.146222 kcal Electronic energy + Delta-G solvation = -32976.605668 eV Core-core repulsion = 28847.826392 eV Total energy + Delta-G solvation = -4128.779275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31108 -41.26813 -38.78135 -38.04749 -37.61414 -36.07296 -34.89717 -34.36016 -31.08891 -29.71486 -29.58647 -28.54860 -27.94633 -27.88872 -25.64724 -24.69875 -22.63230 -22.11428 -21.76718 -21.00548 -20.53598 -18.86166 -18.70073 -18.33827 -18.09129 -17.63767 -17.21023 -16.56893 -16.48168 -15.89094 -15.80537 -15.66044 -15.42660 -14.93171 -14.77086 -14.53624 -14.43477 -14.32034 -14.18767 -13.58274 -13.52285 -13.35674 -13.21767 -12.98659 -12.86603 -12.83483 -12.68930 -12.56544 -12.45456 -12.08494 -12.03873 -11.99356 -11.92678 -11.87779 -11.79427 -11.72916 -11.68802 -11.55451 -11.38225 -11.23695 -11.06859 -10.65340 -10.29237 -9.36118 -8.22963 -6.36575 1.09005 1.30622 1.35351 1.38604 1.44366 1.92641 2.26184 2.38825 2.98990 3.06261 3.52080 3.61028 3.67488 3.80043 3.90087 3.93897 4.05755 4.20715 4.27391 4.28836 4.36746 4.40525 4.46210 4.50689 4.53586 4.64146 4.70023 4.80335 4.81317 4.89712 4.93759 4.97339 4.99406 5.02442 5.12012 5.13031 5.15510 5.17169 5.18615 5.25572 5.32969 5.35397 5.39669 5.42405 5.54620 5.58925 5.65472 5.82825 6.06912 6.11236 6.66640 6.70891 7.09929 7.29398 7.68214 8.83123 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.003995 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.326225 B = 7006.206992 C = 7891.941726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.346 6.346 3 C 0.444 3.556 4 O -0.534 6.534 5 C 0.161 3.839 6 H 0.114 0.886 7 C -0.108 4.108 8 C -0.102 4.102 9 C -0.152 4.152 10 C -0.139 4.139 11 N -0.722 5.722 12 C 0.701 3.299 13 O -0.639 6.639 14 N -0.610 5.610 15 C 0.279 3.721 16 C -0.540 4.540 17 H 0.040 0.960 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.961 3.039 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.285 1.285 24 C 0.124 3.876 25 C -0.153 4.153 26 C -0.110 4.110 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.419 0.581 42 H 0.030 0.970 43 H -0.001 1.001 44 H 0.268 0.732 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.096 0.904 51 H 0.059 0.941 52 H 0.079 0.921 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -14.844 22.371 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.262 6.262 3 C 0.286 3.714 4 O -0.422 6.422 5 C 0.053 3.947 6 H 0.131 0.869 7 C -0.146 4.146 8 C -0.121 4.121 9 C -0.209 4.209 10 C -0.196 4.196 11 N -0.388 5.388 12 C 0.403 3.597 13 O -0.521 6.521 14 N -0.343 5.343 15 C 0.157 3.843 16 C -0.578 4.578 17 H 0.058 0.942 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.785 3.215 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.211 1.211 24 C 0.021 3.979 25 C -0.192 4.192 26 C -0.148 4.148 27 C -0.165 4.165 28 C -0.184 4.184 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.158 0.842 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.266 0.734 42 H 0.048 0.952 43 H 0.017 0.983 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.120 0.880 50 H 0.114 0.886 51 H 0.077 0.923 52 H 0.098 0.902 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.430 -14.813 21.458 26.078 hybrid contribution -1.286 1.165 -1.230 2.127 sum -1.716 -13.648 20.227 24.461 Atomic orbital electron populations 1.23550 0.75643 1.05792 1.01937 1.86555 1.24305 1.31742 1.83571 1.24976 0.93397 0.81647 0.71347 1.90666 1.67676 1.37825 1.46057 1.20781 0.85737 0.83409 1.04775 0.86867 1.21958 1.03258 0.96167 0.93212 1.21287 1.02077 0.91844 0.96857 1.21927 1.00573 1.01146 0.97274 1.21766 1.01844 1.00639 0.95343 1.45768 1.72916 1.11931 1.08189 1.16102 0.77877 0.81843 0.83900 1.90830 1.59219 1.68949 1.33102 1.47519 1.66445 1.11844 1.08469 1.18679 0.94980 0.90730 0.79887 1.21633 0.97977 1.31147 1.07077 0.94154 1.25744 0.99311 0.97328 0.96291 1.70019 1.27806 1.43018 1.15558 0.85581 0.79119 0.78534 0.78226 1.18648 1.19529 1.21143 1.22079 0.95989 0.97116 0.82745 1.23159 0.99751 1.00509 0.95777 1.22556 0.92852 1.04650 0.94707 1.22498 0.98383 0.99538 0.96106 1.22689 0.96402 1.02188 0.97100 0.91571 0.93835 0.84189 0.87821 0.89498 0.89374 0.91839 0.91461 0.94508 0.92052 0.91756 0.91867 0.73408 0.95189 0.98284 0.92312 0.89117 0.90776 0.89228 0.88901 0.88016 0.88557 0.92302 0.90189 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.56 113.37 1.20 1.69 16 2 O -0.35 -9.01 7.73 -51.46 -0.40 -9.40 16 3 C 0.44 14.76 7.30 71.24 0.52 15.28 16 4 O -0.53 -22.10 16.18 21.98 0.36 -21.74 16 5 C 0.16 4.85 2.49 44.25 0.11 4.96 16 6 H 0.11 3.80 5.56 -2.38 -0.01 3.79 16 7 C -0.11 -1.98 4.34 30.60 0.13 -1.84 16 8 C -0.10 -1.60 2.74 -10.79 -0.03 -1.63 16 9 C -0.15 -2.59 9.06 71.98 0.65 -1.94 16 10 C -0.14 -1.48 9.19 71.98 0.66 -0.82 16 11 N -0.72 -25.33 2.97 -461.39 -1.37 -26.70 16 12 C 0.70 33.47 7.11 179.06 1.27 34.74 16 13 O -0.64 -37.16 15.62 -4.01 -0.06 -37.22 16 14 N -0.61 -28.74 2.41 -815.99 -1.97 -30.71 16 15 C 0.28 16.03 5.10 85.64 0.44 16.46 16 16 C -0.54 -33.50 9.39 25.60 0.24 -33.26 16 17 H 0.04 2.58 7.81 -2.91 -0.02 2.55 16 18 C 0.01 0.75 5.46 84.65 0.46 1.21 16 19 N -0.92 -57.67 13.29 21.45 0.28 -57.39 16 20 Si 0.96 47.85 29.54 68.60 2.03 49.88 16 21 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 24 C 0.12 4.37 3.36 45.71 0.15 4.53 16 25 C -0.15 -3.77 5.86 31.69 0.19 -3.58 16 26 C -0.11 -1.82 6.81 31.91 0.22 -1.60 16 27 C -0.13 -2.75 6.13 31.67 0.19 -2.55 16 28 C -0.14 -4.69 5.79 31.32 0.18 -4.51 16 29 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.04 1.07 8.13 -2.38 -0.02 1.05 16 31 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.55 5.26 -2.39 -0.01 1.54 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.04 0.80 6.23 -2.39 -0.01 0.79 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.42 12.18 1.71 -92.71 -0.16 12.02 16 42 H 0.03 1.71 7.92 -2.39 -0.02 1.69 16 43 H 0.00 -0.06 7.50 -2.39 -0.02 -0.08 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.09 3.26 7.82 -2.39 -0.02 3.24 16 46 H 0.07 1.93 5.50 -2.39 -0.01 1.92 16 47 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.06 1.33 6.42 -2.39 -0.02 1.31 16 52 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 53 H 0.03 1.44 7.22 -2.39 -0.02 1.43 16 Total: -1.00 -85.85 409.13 6.20 -79.65 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.74 Total: 26.49 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: 6.59 Total: 27.13 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -3.05 Total: -114.79 kcal Atomic # 8 Polarization: -68.26 SS G_CDS: -0.10 Total: -68.37 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -85.85 6.20 -79.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190791980.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.492 kcal (2) G-P(sol) polarization free energy of solvation -85.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds