Wall clock time and date at job start Sat Apr 11 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47311 * 2 1 4 4 C 1.52993 * 109.47013 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47264 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47788 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47464 * 180.02562 * 6 5 4 8 8 C 1.42904 * 113.99964 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46921 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00023 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99746 * 179.97438 * 9 8 7 12 12 C 1.44955 * 117.34213 * 5.83144 * 11 9 8 13 13 C 1.51959 * 111.95248 * 203.76136 * 12 11 9 14 14 O 1.41321 * 111.61416 * 319.73712 * 13 12 11 15 15 C 1.40852 * 118.30117 * 56.87096 * 14 13 12 16 16 H 1.09001 * 109.53487 * 187.69837 * 15 14 13 17 17 C 1.53922 * 110.46685 * 68.13304 * 15 14 13 18 18 N 1.46782 * 107.61609 * 221.60490 * 17 15 14 19 19 C 1.36934 * 125.36065 * 178.71097 * 18 17 15 20 20 H 1.07997 * 119.99727 * 174.85198 * 19 18 17 21 21 C 1.38812 * 119.99962 * 354.86232 * 19 18 17 22 22 N 1.31622 * 119.99711 * 214.15169 * 21 19 18 23 23 Si 1.86796 * 120.00197 * 34.15386 * 21 19 18 24 24 H 1.48501 * 109.47001 * 174.07632 * 23 21 19 25 25 H 1.48494 * 109.47496 * 54.07920 * 23 21 19 26 26 H 1.48500 * 109.47200 * 294.07538 * 23 21 19 27 27 C 1.46872 * 109.27406 * 358.45399 * 18 17 15 28 28 C 1.44552 * 117.33922 * 185.83392 * 11 9 8 29 29 H 1.09003 * 109.32215 * 286.12600 * 28 11 9 30 30 H 1.09004 * 109.46716 * 60.00278 * 1 2 3 31 31 H 1.08994 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47344 * 300.00453 * 1 2 3 33 33 H 1.09001 * 109.47444 * 239.99430 * 2 1 3 34 34 H 1.08999 * 109.47060 * 119.99458 * 2 1 3 35 35 H 1.08992 * 109.46767 * 59.99570 * 3 2 1 36 36 H 1.08999 * 109.46616 * 299.99730 * 3 2 1 37 37 H 1.09002 * 109.47664 * 60.00113 * 4 3 2 38 38 H 1.08999 * 109.47350 * 299.99453 * 4 3 2 39 39 H 1.09001 * 109.47004 * 59.99580 * 5 4 3 40 40 H 1.09004 * 109.47315 * 300.00417 * 5 4 3 41 41 H 1.09001 * 109.47129 * 59.99732 * 6 5 4 42 42 H 1.09004 * 109.47094 * 300.00627 * 6 5 4 43 43 H 1.08999 * 109.47433 * 60.00233 * 8 7 6 44 44 H 1.08997 * 109.47078 * 299.99469 * 8 7 6 45 45 H 1.09000 * 108.98714 * 83.12724 * 12 11 9 46 46 H 1.09000 * 108.92227 * 324.35517 * 12 11 9 47 47 H 1.09001 * 109.05352 * 199.18721 * 13 12 11 48 48 H 1.08998 * 109.05071 * 80.29010 * 13 12 11 49 49 H 1.09003 * 109.94063 * 102.02570 * 17 15 14 50 50 H 1.08993 * 109.71677 * 341.06746 * 17 15 14 51 51 H 0.96999 * 120.00226 * 5.00554 * 22 21 19 52 52 H 1.08996 * 110.06508 * 137.28395 * 27 18 17 53 53 H 1.09004 * 110.06530 * 258.75589 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6100 2.8850 0.0013 7 8 6.0863 4.2322 0.0013 8 6 7.5109 4.3450 0.0019 9 6 7.8995 5.8011 0.0012 10 8 7.0411 6.6578 0.0008 11 7 9.2010 6.1512 0.0021 12 6 10.1768 5.0871 -0.1271 13 6 11.5270 5.4816 0.4477 14 8 11.8540 6.8208 0.1366 15 6 10.9586 7.8351 0.5283 16 1 11.2770 8.7866 0.1025 17 6 10.9329 7.9677 2.0616 18 7 9.5347 8.1531 2.4680 19 6 9.0953 8.2845 3.7583 20 1 8.0556 8.5004 3.9552 21 6 9.9862 8.1404 4.8130 22 7 9.5833 7.6062 5.9464 23 14 11.7568 8.7048 4.6238 24 1 12.4594 8.5755 5.9257 25 1 11.7801 10.1241 4.1876 26 1 12.4386 7.8635 3.6077 27 6 8.6820 8.1817 1.2725 28 6 9.5102 7.5573 0.1319 29 1 9.2831 8.0646 -0.8058 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9338 0.9285 -0.8891 38 1 3.9329 0.9288 0.8909 39 1 3.7163 3.3993 0.8895 40 1 3.7171 3.3983 -0.8904 41 1 5.9741 2.3705 -0.8880 42 1 5.9726 2.3717 0.8919 43 1 7.9141 3.8614 -0.8879 44 1 7.9133 3.8617 0.8921 45 1 10.2983 4.8435 -1.1826 46 1 9.8108 4.2060 0.4000 47 1 12.2939 4.8238 0.0385 48 1 11.5006 5.3641 1.5310 49 1 11.5249 8.8294 2.3701 50 1 11.3329 7.0613 2.5158 51 1 8.6854 7.2470 6.0212 52 1 7.7789 7.5958 1.4433 53 1 8.4191 9.2102 1.0252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219010561.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:27 Heat of formation + Delta-G solvation = -112.382431 kcal Electronic energy + Delta-G solvation = -30879.459564 eV Core-core repulsion = 26751.624037 eV Total energy + Delta-G solvation = -4127.835527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29815 -40.14720 -38.82955 -37.86110 -37.05629 -36.25835 -34.65055 -33.75436 -32.16729 -30.54017 -29.72765 -29.25880 -27.97669 -25.95486 -24.92896 -24.58683 -22.72664 -22.24703 -21.89041 -21.77449 -20.22309 -19.48858 -18.60600 -18.51271 -17.87134 -17.52597 -17.21648 -16.80242 -16.58635 -16.17620 -16.10202 -15.81843 -15.67061 -15.36077 -15.03150 -14.92204 -14.79172 -14.53834 -14.08497 -14.03491 -13.85717 -13.61525 -13.47104 -13.35930 -12.95463 -12.91848 -12.73492 -12.58266 -12.48899 -12.24683 -12.15861 -11.95576 -11.80806 -11.74955 -11.72433 -11.49216 -11.38066 -11.33996 -10.95558 -10.71672 -10.51481 -10.43206 -9.66467 -9.21066 -8.76651 -5.43183 1.38466 1.38753 1.48523 1.58272 1.69216 2.51279 2.55083 2.75907 2.88256 3.24600 3.38960 3.45746 3.57256 3.80664 3.90669 3.92393 3.96841 4.02802 4.08417 4.09766 4.15447 4.17009 4.21716 4.33919 4.35652 4.38560 4.43247 4.50769 4.58480 4.61672 4.68422 4.77953 4.81666 4.84714 4.88363 4.90099 4.92964 5.00138 5.05523 5.06421 5.18406 5.21853 5.34497 5.44761 5.47568 5.50019 5.55838 5.96966 6.00988 6.18946 6.31028 6.75997 7.04200 7.40985 8.05150 8.71631 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.002381 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.416431 B =11756.708592 C =12864.299633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.108 4.108 5 C -0.119 4.119 6 C 0.056 3.944 7 O -0.402 6.402 8 C 0.052 3.948 9 C 0.499 3.501 10 O -0.559 6.559 11 N -0.592 5.592 12 C 0.067 3.933 13 C 0.046 3.954 14 O -0.363 6.363 15 C 0.103 3.897 16 H 0.147 0.853 17 C 0.085 3.915 18 N -0.620 5.620 19 C -0.337 4.337 20 H 0.037 0.963 21 C -0.062 4.062 22 N -0.934 5.934 23 Si 1.079 2.921 24 H -0.304 1.304 25 H -0.285 1.285 26 H -0.239 1.239 27 C 0.116 3.884 28 C 0.124 3.876 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.122 0.878 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.155 0.845 48 H 0.034 0.966 49 H 0.034 0.966 50 H 0.037 0.963 51 H 0.249 0.751 52 H 0.049 0.951 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 -17.922 -19.885 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.019 4.019 7 O -0.322 6.322 8 C -0.027 4.027 9 C 0.288 3.712 10 O -0.437 6.437 11 N -0.327 5.327 12 C -0.055 4.055 13 C -0.030 4.030 14 O -0.280 6.280 15 C 0.043 3.957 16 H 0.164 0.836 17 C -0.040 4.040 18 N -0.349 5.349 19 C -0.465 4.465 20 H 0.055 0.945 21 C -0.258 4.258 22 N -0.575 5.575 23 Si 0.905 3.095 24 H -0.232 1.232 25 H -0.213 1.213 26 H -0.163 1.163 27 C -0.009 4.009 28 C 0.018 3.982 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.140 0.860 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.173 0.827 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.067 0.933 53 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.053 -17.102 -19.117 25.732 hybrid contribution -2.322 0.278 0.373 2.368 sum -4.375 -16.824 -18.744 25.564 Atomic orbital electron populations 1.21797 0.95823 1.01945 1.01720 1.21527 0.95988 0.96215 1.02370 1.21613 0.95021 0.97382 1.01892 1.21461 0.95673 0.94324 1.03097 1.21533 0.93287 0.98486 1.02371 1.22803 0.95480 0.81878 1.01780 1.87977 1.19643 1.28810 1.95746 1.22361 0.83482 0.92053 1.04784 1.21064 0.82192 0.92121 0.75850 1.90655 1.50731 1.53182 1.49174 1.46757 1.06288 1.06948 1.72741 1.22097 0.89392 0.89600 1.04385 1.22655 0.97291 0.83313 0.99783 1.86932 1.46137 1.15072 1.79873 1.22469 0.87516 0.93211 0.92480 0.83559 1.22581 0.86525 0.98801 0.96053 1.44612 1.02309 1.86193 1.01738 1.19737 0.94480 1.49287 0.82966 0.94467 1.26948 1.08163 0.98198 0.92520 1.71028 1.19157 1.36703 1.30638 0.83885 0.72832 0.77622 0.75179 1.23248 1.21262 1.16350 1.21929 0.95117 0.97867 0.86019 1.21451 0.96069 0.82083 0.98550 0.88342 0.92720 0.92135 0.93144 0.91337 0.91921 0.92790 0.92005 0.90348 0.91346 0.93040 0.91713 0.90542 0.92342 0.86000 0.88894 0.87280 0.87687 0.82711 0.94789 0.94861 0.94521 0.94212 0.93310 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.42 5.93 30.60 0.18 -1.24 16 3 C -0.12 -1.67 5.21 30.59 0.16 -1.51 16 4 C -0.11 -1.46 5.21 30.59 0.16 -1.30 16 5 C -0.12 -2.27 5.58 30.59 0.17 -2.10 16 6 C 0.06 1.08 5.94 71.98 0.43 1.51 16 7 O -0.40 -11.65 9.88 -129.94 -1.28 -12.93 16 8 C 0.05 1.24 4.82 71.24 0.34 1.59 16 9 C 0.50 16.74 7.01 87.66 0.61 17.35 16 10 O -0.56 -24.52 13.82 16.02 0.22 -24.30 16 11 N -0.59 -17.69 3.09 -806.43 -2.49 -20.18 16 12 C 0.07 1.28 5.91 86.33 0.51 1.79 16 13 C 0.05 0.98 6.72 71.64 0.48 1.47 16 14 O -0.36 -9.87 10.25 -146.18 -1.50 -11.37 16 15 C 0.10 3.29 3.82 30.81 0.12 3.41 16 16 H 0.15 3.93 8.14 -2.39 -0.02 3.91 16 17 C 0.09 3.65 4.22 86.64 0.37 4.02 16 18 N -0.62 -32.11 3.37 -696.28 -2.35 -34.46 16 19 C -0.34 -20.81 10.37 84.03 0.87 -19.94 16 20 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 21 C -0.06 -3.82 5.42 84.86 0.46 -3.36 16 22 N -0.93 -61.15 13.70 21.65 0.30 -60.85 16 23 Si 1.08 53.30 25.10 68.60 1.72 55.02 16 24 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 26 H -0.24 -10.29 5.05 99.48 0.50 -9.79 16 27 C 0.12 5.34 6.29 86.70 0.55 5.89 16 28 C 0.12 4.24 3.34 45.66 0.15 4.39 16 29 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.12 1.74 7.94 -2.39 -0.02 1.72 16 44 H 0.09 1.95 7.42 -2.39 -0.02 1.94 16 45 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.11 1.55 6.26 -2.39 -0.01 1.54 16 47 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.03 0.92 6.83 -2.39 -0.02 0.90 16 49 H 0.03 1.46 4.91 -2.39 -0.01 1.45 16 50 H 0.04 1.67 5.01 -2.39 -0.01 1.66 16 51 H 0.25 16.54 8.73 -92.71 -0.81 15.73 16 52 H 0.05 2.57 5.11 -2.39 -0.01 2.56 16 53 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -84.75 401.02 1.53 -83.22 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.63 Total: 14.91 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.28 Total: 10.94 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -4.54 Total: -115.49 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -2.56 Total: -48.60 kcal Atomic # 14 Polarization: 53.30 SS G_CDS: 1.72 Total: 55.02 kcal Total: -84.75 1.53 -83.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219010561.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.161 kcal (2) G-P(sol) polarization free energy of solvation -84.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds