Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00200 * 2 1 4 4 C 1.53000 * 109.46964 * 60.00029 * 3 2 1 5 5 C 1.53003 * 109.47069 * 300.00415 * 3 2 1 6 6 C 1.52994 * 109.47194 * 179.97438 * 3 2 1 7 7 C 1.53009 * 109.47045 * 65.00140 * 6 3 2 8 8 N 1.46893 * 109.47135 * 179.97438 * 7 6 3 9 9 C 1.48054 * 111.00150 * 170.00056 * 8 7 6 10 10 C 1.53398 * 86.02491 * 222.77488 * 9 8 7 11 11 C 1.48062 * 110.99861 * 70.54686 * 8 7 6 12 12 C 1.52563 * 113.80509 * 268.71612 * 10 9 8 13 13 N 1.46271 * 109.56650 * 273.97854 * 12 10 9 14 14 C 1.46503 * 118.71402 * 163.92105 * 13 12 10 15 15 C 1.52998 * 109.47013 * 90.00177 * 14 13 12 16 16 C 1.50699 * 109.47172 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00064 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00195 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47163 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47194 * 119.99731 * 20 18 16 23 23 H 1.48491 * 109.47455 * 240.00052 * 20 18 16 24 24 C 1.33712 * 122.56694 * 343.92231 * 13 12 10 25 25 O 1.21282 * 118.37931 * 183.25932 * 24 13 12 26 26 C 1.50163 * 123.24130 * 3.23823 * 24 13 12 27 27 O 1.42681 * 113.76711 * 138.11412 * 10 9 8 28 28 H 1.09005 * 109.46926 * 300.00017 * 1 2 3 29 29 H 1.09000 * 109.46921 * 59.99827 * 1 2 3 30 30 H 1.08992 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47303 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47244 * 299.99838 * 4 3 2 33 33 H 1.08997 * 109.47545 * 60.00212 * 4 3 2 34 34 H 1.09000 * 109.47162 * 299.99511 * 5 3 2 35 35 H 1.08996 * 109.47140 * 59.99753 * 5 3 2 36 36 H 1.08998 * 109.46995 * 180.02562 * 5 3 2 37 37 H 1.08998 * 109.47351 * 305.00202 * 6 3 2 38 38 H 1.09000 * 109.47057 * 184.99636 * 6 3 2 39 39 H 1.09007 * 109.46813 * 59.99766 * 7 6 3 40 40 H 1.08997 * 109.46838 * 300.00182 * 7 6 3 41 41 H 1.08993 * 113.78984 * 108.49572 * 9 8 7 42 42 H 1.09002 * 113.78491 * 337.05011 * 9 8 7 43 43 H 1.09001 * 113.78482 * 22.95195 * 11 8 7 44 44 H 1.09007 * 113.78819 * 251.50526 * 11 8 7 45 45 H 1.08997 * 109.45597 * 34.01159 * 12 10 9 46 46 H 1.09004 * 109.44959 * 153.94964 * 12 10 9 47 47 H 1.08996 * 109.46694 * 210.00179 * 14 13 12 48 48 H 1.09000 * 109.47017 * 330.00267 * 14 13 12 49 49 H 1.09004 * 109.47037 * 300.00074 * 15 14 13 50 50 H 1.08996 * 109.47281 * 59.99695 * 15 14 13 51 51 H 0.96995 * 120.00011 * 180.02562 * 19 18 16 52 52 H 1.09000 * 109.35284 * 222.12682 * 26 24 13 53 53 H 1.08998 * 109.35259 * 102.56378 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5589 2.0647 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1846 0.0006 7 6 3.9963 0.5364 -1.3065 8 7 5.4607 0.4209 -1.3062 9 6 5.9275 -0.4115 -2.4380 10 6 6.8905 -1.0523 -1.4305 11 6 5.9118 -0.6042 -0.3377 12 6 8.2516 -0.3671 -1.3579 13 7 9.1339 -0.9202 -2.3851 14 6 10.3504 -0.1845 -2.7387 15 6 11.5041 -0.6481 -1.8471 16 6 12.7553 0.1092 -2.2103 17 1 12.7303 0.8470 -2.9986 18 6 13.9323 -0.1406 -1.5371 19 7 13.9631 -1.0402 -0.5781 20 14 15.4834 0.7975 -1.9878 21 1 15.1855 1.7456 -3.0914 22 1 15.9667 1.5528 -0.8040 23 1 16.5310 -0.1594 -2.4259 24 6 8.8734 -2.0711 -3.0140 25 8 9.6869 -2.4899 -3.8102 26 6 7.6237 -2.8709 -2.7829 27 8 6.9993 -2.4691 -1.5601 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.0019 3.0606 1.2491 32 1 0.4723 2.1508 1.2493 33 1 1.8805 1.5238 2.1392 34 1 1.8804 1.5239 -2.1392 35 1 0.4722 2.1508 -1.2492 36 1 2.0025 3.0603 -1.2494 37 1 3.8508 0.5685 0.8426 38 1 3.9785 2.1765 0.0901 39 1 3.6809 1.1526 -2.1485 40 1 3.5532 -0.4555 -1.3960 41 1 6.4268 0.1552 -3.2239 42 1 5.1715 -1.0971 -2.8208 43 1 5.1511 -1.3469 -0.0974 44 1 6.3986 -0.1905 0.5456 45 1 8.1285 0.7033 -1.5230 46 1 8.6902 -0.5343 -0.3741 47 1 10.5992 -0.3742 -3.7828 48 1 10.1848 0.8830 -2.5928 49 1 11.2552 -0.4583 -0.8029 50 1 11.6697 -1.7155 -1.9929 51 1 14.7910 -1.2157 -0.1042 52 1 7.8774 -3.9295 -2.7279 53 1 6.9334 -2.7097 -3.6108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272693867.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -110.525935 kcal Electronic energy + Delta-G solvation = -30859.347086 eV Core-core repulsion = 26731.592063 eV Total energy + Delta-G solvation = -4127.755023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.41914 -40.69340 -39.90384 -37.90653 -37.00522 -35.17314 -34.89012 -32.33413 -31.68177 -29.66363 -28.58329 -28.41246 -27.68312 -27.22220 -26.35277 -25.89380 -23.66568 -22.75684 -21.25218 -20.68562 -19.33765 -18.88934 -18.72494 -17.73433 -17.35347 -17.17197 -16.89284 -16.57540 -16.47478 -16.33331 -16.01169 -15.80734 -15.32605 -15.05070 -14.86711 -14.65852 -14.47611 -14.33517 -14.21316 -14.11486 -13.96867 -13.44423 -13.30080 -13.23388 -13.05700 -12.88818 -12.85297 -12.70152 -12.56463 -12.49774 -12.34198 -12.21923 -11.98616 -11.90159 -11.69923 -11.57575 -11.45693 -11.31284 -11.12433 -10.60779 -10.45446 -10.43221 -9.91199 -9.70402 -8.23517 -6.36325 1.38415 1.40386 1.45324 1.53835 1.81964 2.38887 2.44272 2.80633 2.92317 3.09792 3.21630 3.25209 3.61172 3.73193 3.83032 3.97950 4.10287 4.12746 4.21714 4.25830 4.30420 4.38728 4.45611 4.47653 4.49671 4.51416 4.55707 4.61215 4.67649 4.68693 4.70706 4.71942 4.77551 4.83427 4.90225 4.90994 4.91603 5.02014 5.06277 5.16506 5.21130 5.23047 5.34206 5.42719 5.44463 5.55096 5.74622 5.80905 5.94944 6.14987 6.37379 6.41644 6.79021 7.04190 7.33209 8.89093 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.002157 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.884370 B =12974.950520 C =13807.003889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.401 6.401 3 C 0.109 3.891 4 C -0.176 4.176 5 C -0.179 4.179 6 C -0.097 4.097 7 C 0.029 3.971 8 N -0.474 5.474 9 C -0.009 4.009 10 C 0.061 3.939 11 C 0.036 3.964 12 C 0.115 3.885 13 N -0.599 5.599 14 C 0.129 3.871 15 C 0.026 3.974 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.973 3.027 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.282 1.282 24 C 0.470 3.530 25 O -0.592 6.592 26 C 0.064 3.936 27 O -0.363 6.363 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.090 0.910 49 H -0.004 1.004 50 H -0.027 1.027 51 H 0.264 0.736 52 H 0.138 0.862 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.342 6.311 1.676 32.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.321 6.321 3 C 0.069 3.931 4 C -0.234 4.234 5 C -0.236 4.236 6 C -0.135 4.135 7 C -0.099 4.099 8 N -0.198 5.198 9 C -0.137 4.137 10 C 0.021 3.979 11 C -0.093 4.093 12 C -0.007 4.007 13 N -0.330 5.330 14 C 0.007 3.993 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.797 3.203 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.208 1.208 24 C 0.258 3.742 25 O -0.474 6.474 26 C -0.015 4.015 27 O -0.281 6.281 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.108 0.892 49 H 0.015 0.985 50 H -0.008 1.008 51 H 0.073 0.927 52 H 0.155 0.845 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -31.604 6.421 1.605 32.290 hybrid contribution 0.768 -0.485 -0.189 0.928 sum -30.836 5.936 1.417 31.434 Atomic orbital electron populations 1.22900 0.80636 1.03226 1.00807 1.87950 1.20652 1.28294 1.95188 1.21562 0.93205 0.83106 0.95188 1.22390 1.02250 1.01238 0.97476 1.22470 1.02158 1.01292 0.97700 1.21502 0.92288 1.02443 0.97283 1.22669 0.87194 1.00656 0.99351 1.68590 1.13360 1.34707 1.03145 1.24512 0.97584 0.95984 0.95651 1.23504 0.93645 0.80708 1.00090 1.24030 0.95723 0.93469 0.96052 1.21856 0.87742 0.99879 0.91242 1.47748 1.23943 1.22498 1.38782 1.21518 0.83254 0.95461 0.99021 1.19154 0.93326 0.94497 0.94222 1.21569 0.95102 1.22184 1.19150 0.91501 1.26065 1.03031 0.96214 0.94761 1.70135 1.28333 1.34581 1.24332 0.85285 0.78064 0.78373 0.78611 1.18168 1.19852 1.20755 1.21650 0.89975 0.81759 0.80788 1.90728 1.49029 1.68999 1.38595 1.22746 0.89486 1.00003 0.89259 1.88112 1.79341 1.21572 1.39059 0.93147 0.93109 0.89351 0.90486 0.91494 0.92305 0.91866 0.91636 0.90544 0.91628 0.89178 0.89614 0.93671 0.88849 0.88764 0.88828 0.87234 0.87145 0.91477 0.92322 0.89153 0.98531 1.00816 0.92725 0.84475 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.21 113.37 1.16 1.36 16 2 O -0.40 -6.09 9.88 -148.98 -1.47 -7.56 16 3 C 0.11 1.30 0.82 -10.79 -0.01 1.29 16 4 C -0.18 -1.73 8.25 71.98 0.59 -1.14 16 5 C -0.18 -1.73 7.76 71.98 0.56 -1.17 16 6 C -0.10 -1.29 4.57 30.60 0.14 -1.15 16 7 C 0.03 0.43 4.22 86.31 0.36 0.79 16 8 N -0.47 -8.25 6.15 -920.47 -5.66 -13.92 16 9 C -0.01 -0.16 6.67 86.21 0.58 0.42 16 10 C 0.06 1.41 1.21 -10.65 -0.01 1.39 16 11 C 0.04 0.66 6.52 86.20 0.56 1.22 16 12 C 0.12 3.33 5.79 86.28 0.50 3.83 16 13 N -0.60 -22.50 2.83 -825.53 -2.34 -24.84 16 14 C 0.13 5.76 5.20 86.38 0.45 6.21 16 15 C 0.03 1.47 5.29 29.85 0.16 1.63 16 16 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 17 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 18 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 19 N -0.93 -59.14 13.29 21.45 0.28 -58.85 16 20 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 C 0.47 17.95 7.57 87.65 0.66 18.61 16 25 O -0.59 -28.40 16.33 -3.04 -0.05 -28.45 16 26 C 0.06 1.71 6.67 71.07 0.47 2.18 16 27 O -0.36 -9.46 10.66 -148.98 -1.59 -11.05 16 28 H 0.05 0.42 6.42 -2.38 -0.02 0.40 16 29 H 0.05 0.42 6.42 -2.39 -0.02 0.40 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.55 6.54 -2.39 -0.02 0.54 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.67 6.35 -2.39 -0.02 0.66 16 35 H 0.06 0.54 6.54 -2.39 -0.02 0.52 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.97 7.54 -2.39 -0.02 0.95 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.16 6.35 -2.38 -0.02 1.15 16 40 H 0.04 0.74 7.38 -2.39 -0.02 0.72 16 41 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 42 H 0.09 1.53 7.79 -2.39 -0.02 1.51 16 43 H 0.09 1.63 7.79 -2.39 -0.02 1.61 16 44 H 0.11 1.88 8.09 -2.38 -0.02 1.86 16 45 H 0.11 2.84 7.88 -2.39 -0.02 2.82 16 46 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 47 H 0.06 2.80 7.29 -2.39 -0.02 2.78 16 48 H 0.09 3.53 7.96 -2.39 -0.02 3.51 16 49 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 50 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 51 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 52 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 53 H 0.12 2.36 7.92 -2.39 -0.02 2.35 16 Total: -1.00 -77.31 411.02 -1.06 -78.37 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.88 Total: 14.78 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 6.87 Total: 3.97 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -7.72 Total: -97.61 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -3.11 Total: -47.06 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -77.31 -1.06 -78.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272693867.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.158 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds