Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47553 * 2 1 4 4 C 1.53004 * 109.47171 * 239.99999 * 2 1 3 5 5 C 1.52999 * 109.46780 * 120.00025 * 2 1 3 6 6 H 1.08998 * 109.47248 * 299.99530 * 5 2 1 7 7 O 1.42906 * 109.47053 * 179.97438 * 5 2 1 8 8 C 1.52995 * 109.47363 * 59.99977 * 5 2 1 9 9 N 1.46903 * 109.47553 * 184.99869 * 8 5 2 10 10 C 1.48035 * 111.00196 * 190.00078 * 9 8 5 11 11 C 1.53502 * 86.04709 * 137.28752 * 10 9 8 12 12 C 1.48046 * 110.99948 * 289.44120 * 9 8 5 13 13 C 1.52910 * 113.68514 * 222.23801 * 11 10 9 14 14 O 1.43383 * 108.13036 * 274.11656 * 13 11 10 15 15 C 1.42816 * 113.34640 * 294.20945 * 14 13 11 16 16 C 1.50281 * 110.49504 * 51.30587 * 15 14 13 17 17 O 1.21271 * 118.97517 * 161.61797 * 16 15 14 18 18 N 1.34272 * 122.05213 * 341.60146 * 16 15 14 19 19 C 1.46506 * 119.37478 * 181.96653 * 18 16 15 20 20 C 1.53002 * 109.47305 * 275.43336 * 19 18 16 21 21 C 1.50697 * 109.47358 * 174.88022 * 20 19 18 22 22 H 1.08005 * 119.99470 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00211 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99580 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00092 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47360 * 59.99520 * 25 23 21 27 27 H 1.48496 * 109.47149 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46903 * 299.99653 * 25 23 21 29 29 H 1.09001 * 109.47302 * 300.00440 * 1 2 3 30 30 H 1.09006 * 109.47094 * 60.00270 * 1 2 3 31 31 H 1.09004 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47468 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47205 * 300.00126 * 3 2 1 34 34 H 1.09001 * 109.47176 * 59.99483 * 3 2 1 35 35 H 1.09008 * 109.46617 * 300.00119 * 4 2 1 36 36 H 1.08992 * 109.47348 * 59.99904 * 4 2 1 37 37 H 1.08999 * 109.47092 * 180.02562 * 4 2 1 38 38 H 0.96705 * 113.99817 * 299.99927 * 7 5 2 39 39 H 1.09005 * 109.47063 * 65.00049 * 8 5 2 40 40 H 1.09003 * 109.47207 * 304.99870 * 8 5 2 41 41 H 1.09000 * 113.78562 * 23.00024 * 10 9 8 42 42 H 1.09004 * 113.78058 * 251.57420 * 10 9 8 43 43 H 1.09001 * 113.78315 * 108.41375 * 12 9 8 44 44 H 1.09001 * 113.77596 * 336.98724 * 12 9 8 45 45 H 1.09006 * 109.90183 * 154.39003 * 13 11 10 46 46 H 1.08996 * 109.63249 * 33.69346 * 13 11 10 47 47 H 1.09004 * 109.27094 * 291.04872 * 15 14 13 48 48 H 1.09000 * 109.27541 * 171.57053 * 15 14 13 49 49 H 1.08997 * 109.46830 * 155.43329 * 19 18 16 50 50 H 1.08996 * 109.46880 * 35.43530 * 19 18 16 51 51 H 1.09008 * 109.46923 * 294.88289 * 20 19 18 52 52 H 1.08997 * 109.46767 * 54.87487 * 20 19 18 53 53 H 0.97005 * 119.99943 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2493 6 1 1.6766 -0.2074 2.1392 7 8 3.4689 -0.7218 1.2490 8 6 1.5299 -2.1637 1.2493 9 7 1.9184 -2.8206 2.5045 10 6 1.6553 -4.2761 2.4452 11 6 3.0245 -4.4435 3.1188 12 6 3.3781 -3.0642 2.5461 13 6 3.8628 -5.5799 2.5324 14 8 3.4895 -6.7965 3.1931 15 6 3.8266 -6.8133 4.5808 16 6 3.3099 -5.5779 5.2628 17 8 3.2038 -5.5745 6.4709 18 7 2.9623 -4.4775 4.5763 19 6 2.5064 -3.2905 5.3041 20 6 1.0109 -3.4176 5.6012 21 6 0.5685 -2.2589 6.4572 22 1 1.2828 -1.5073 6.7595 23 6 -0.7477 -2.1589 6.8553 24 7 -1.6172 -3.0744 6.4875 25 14 -1.2962 -0.7222 7.9157 26 1 -1.0417 0.5508 7.1948 27 1 -2.7476 -0.8456 8.2041 28 1 -0.5353 -0.7295 9.1909 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 3.8619 -1.1638 0.4839 39 1 1.9645 -2.7028 0.4075 40 1 0.4435 -2.1650 1.1597 41 1 1.6126 -4.6742 1.4314 42 1 0.8182 -4.5971 3.0652 43 1 3.9114 -2.4211 3.2461 44 1 3.8452 -3.1037 1.5620 45 1 4.9221 -5.3825 2.6967 46 1 3.6658 -5.6665 1.4639 47 1 4.9106 -6.8562 4.6872 48 1 3.3848 -7.6935 5.0478 49 1 2.6821 -2.4025 4.6971 50 1 3.0569 -3.2051 6.2409 51 1 0.4527 -3.4116 4.6649 52 1 0.8236 -4.3522 6.1298 53 1 -2.5432 -3.0043 6.7679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273891862.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = -116.349372 kcal Electronic energy + Delta-G solvation = -32818.107856 eV Core-core repulsion = 28690.100310 eV Total energy + Delta-G solvation = -4128.007546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.51406 -40.62522 -39.40055 -38.46124 -36.23370 -35.59917 -34.87706 -32.38531 -31.39974 -29.67904 -28.42057 -28.19984 -27.85584 -27.34301 -26.17636 -25.48686 -23.16228 -22.82110 -21.87063 -20.01246 -19.39866 -18.81228 -18.39249 -17.69752 -17.39427 -17.07203 -16.91951 -16.56896 -16.26002 -16.16413 -15.92938 -15.63810 -15.19938 -15.04504 -14.71829 -14.57884 -14.40110 -14.38293 -14.16386 -13.73069 -13.46064 -13.30405 -13.23218 -12.98133 -12.95299 -12.80269 -12.76954 -12.65173 -12.61953 -12.31333 -12.14260 -12.03865 -11.98111 -11.76909 -11.65405 -11.64495 -11.36539 -11.31599 -11.28010 -10.56515 -10.52743 -10.25349 -9.62421 -9.49230 -8.19071 -6.28929 1.34159 1.39092 1.45057 1.47460 1.89074 2.40355 2.68021 2.90853 3.14033 3.29817 3.44525 3.57833 3.59317 3.70180 3.87302 4.02723 4.06139 4.16672 4.20819 4.30257 4.35649 4.41559 4.49286 4.56197 4.57548 4.58415 4.67677 4.70068 4.75480 4.77276 4.84307 4.91834 4.93076 4.96709 5.03115 5.06859 5.09964 5.12716 5.18016 5.28380 5.32368 5.47798 5.49443 5.52507 5.55329 5.72998 5.80057 5.92420 6.19722 6.24825 6.53648 6.85305 6.93366 7.10814 7.37891 8.92979 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007184 B = 0.005318 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3896.780137 B = 5263.735218 C = 8352.972517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.143 4.143 5 C 0.131 3.869 6 H 0.066 0.934 7 O -0.560 6.560 8 C -0.006 4.006 9 N -0.494 5.494 10 C 0.004 3.996 11 C 0.092 3.908 12 C 0.034 3.966 13 C 0.066 3.934 14 O -0.375 6.375 15 C 0.064 3.936 16 C 0.465 3.535 17 O -0.592 6.592 18 N -0.574 5.574 19 C 0.143 3.857 20 C 0.043 3.957 21 C -0.534 4.534 22 H 0.053 0.947 23 C 0.003 3.997 24 N -0.932 5.932 25 Si 0.962 3.038 26 H -0.263 1.263 27 H -0.280 1.280 28 H -0.272 1.272 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.380 0.620 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.122 0.878 45 H 0.092 0.908 46 H 0.151 0.849 47 H 0.121 0.879 48 H 0.133 0.867 49 H 0.093 0.907 50 H 0.034 0.966 51 H 0.014 0.986 52 H -0.041 1.041 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.314 0.244 -23.041 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 C -0.191 4.191 4 C -0.200 4.200 5 C 0.071 3.929 6 H 0.084 0.916 7 O -0.368 6.368 8 C -0.135 4.135 9 N -0.217 5.217 10 C -0.126 4.126 11 C 0.005 3.995 12 C -0.095 4.095 13 C -0.011 4.011 14 O -0.293 6.293 15 C -0.016 4.016 16 C 0.255 3.745 17 O -0.473 6.473 18 N -0.304 5.304 19 C 0.021 3.979 20 C 0.005 3.995 21 C -0.573 4.573 22 H 0.071 0.929 23 C -0.194 4.194 24 N -0.573 5.573 25 Si 0.786 3.214 26 H -0.188 1.188 27 H -0.205 1.205 28 H -0.197 1.197 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.230 0.770 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.131 0.869 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.140 0.860 45 H 0.110 0.890 46 H 0.169 0.831 47 H 0.138 0.862 48 H 0.151 0.849 49 H 0.111 0.889 50 H 0.052 0.948 51 H 0.032 0.968 52 H -0.023 1.023 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.587 0.787 -21.466 24.897 hybrid contribution -0.822 0.304 0.367 0.950 sum 11.765 1.091 -21.099 24.183 Atomic orbital electron populations 1.21930 0.94626 1.02054 1.01712 1.21124 0.95813 0.96505 0.95828 1.21754 1.01512 0.94678 1.01175 1.21921 1.01716 1.00448 0.95920 1.21678 0.80608 0.93512 0.97080 0.91629 1.86664 1.18844 1.81353 1.49899 1.23438 1.01855 0.96422 0.91748 1.68654 1.09204 1.10409 1.33421 1.24376 0.97364 0.89890 1.00941 1.22744 0.97579 0.99295 0.79835 1.24161 0.91211 0.92137 1.02010 1.23337 0.98368 0.80433 0.98987 1.88130 1.83141 1.37881 1.20107 1.22747 1.02830 0.94354 0.81631 1.22116 0.77852 0.86583 0.87993 1.90728 1.56107 1.83669 1.16811 1.47513 1.62997 1.13448 1.06419 1.21341 0.95360 0.86925 0.94286 1.19016 0.91777 0.93628 0.95083 1.21473 0.94679 1.09217 1.31935 0.92865 1.25892 0.96788 0.99123 0.97618 1.70115 1.03581 1.36321 1.47246 0.85553 0.77126 0.79546 0.79129 1.18817 1.20525 1.19678 0.94258 0.91275 0.92301 0.91877 0.91775 0.94466 0.91698 0.91701 0.91073 0.77036 0.90527 0.90985 0.86926 0.93280 0.90397 0.86020 0.88977 0.83109 0.86183 0.84909 0.88905 0.94774 0.96791 1.02262 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.13 71.98 0.59 -2.14 16 2 C -0.09 -1.51 0.63 -52.18 -0.03 -1.54 16 3 C -0.13 -2.29 8.33 71.98 0.60 -1.69 16 4 C -0.14 -1.48 7.82 71.98 0.56 -0.92 16 5 C 0.13 2.80 2.50 30.59 0.08 2.88 16 6 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 7 O -0.56 -10.43 10.48 -148.98 -1.56 -11.99 16 8 C -0.01 -0.14 3.91 86.30 0.34 0.20 16 9 N -0.49 -14.17 4.74 -914.34 -4.33 -18.50 16 10 C 0.00 0.11 6.63 86.25 0.57 0.68 16 11 C 0.09 2.40 1.55 5.21 0.01 2.41 16 12 C 0.03 0.74 4.69 86.24 0.40 1.15 16 13 C 0.07 1.09 6.10 71.95 0.44 1.53 16 14 O -0.37 -8.56 10.84 -148.98 -1.61 -10.17 16 15 C 0.06 1.63 6.94 71.10 0.49 2.12 16 16 C 0.47 18.08 7.59 87.60 0.66 18.75 16 17 O -0.59 -29.57 16.48 -3.00 -0.05 -29.62 16 18 N -0.57 -21.70 2.67 -785.28 -2.10 -23.79 16 19 C 0.14 6.76 4.40 86.38 0.38 7.14 16 20 C 0.04 2.50 5.09 29.85 0.15 2.66 16 21 C -0.53 -33.23 9.11 25.60 0.23 -33.00 16 22 H 0.05 3.20 7.74 -2.91 -0.02 3.18 16 23 C 0.00 0.20 5.46 84.66 0.46 0.66 16 24 N -0.93 -60.60 13.29 21.45 0.28 -60.31 16 25 Si 0.96 47.59 29.54 68.60 2.03 49.62 16 26 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 27 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 28 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.07 8.14 -2.38 -0.02 1.06 16 31 H 0.06 1.11 6.32 -2.38 -0.02 1.09 16 32 H 0.06 1.04 7.68 -2.39 -0.02 1.02 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.61 6.54 -2.38 -0.02 0.59 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.53 6.78 -2.39 -0.02 0.51 16 38 H 0.38 3.76 6.95 -74.05 -0.51 3.25 16 39 H 0.08 1.05 6.26 -2.38 -0.01 1.04 16 40 H 0.07 1.79 6.17 -2.39 -0.01 1.78 16 41 H 0.11 2.15 7.56 -2.39 -0.02 2.13 16 42 H 0.05 1.93 6.93 -2.38 -0.02 1.92 16 43 H 0.08 2.11 7.01 -2.39 -0.02 2.09 16 44 H 0.12 1.48 6.98 -2.39 -0.02 1.46 16 45 H 0.09 1.12 8.13 -2.38 -0.02 1.11 16 46 H 0.15 1.35 7.87 -2.39 -0.02 1.33 16 47 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 48 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 49 H 0.09 4.14 5.40 -2.39 -0.01 4.13 16 50 H 0.03 1.76 7.53 -2.39 -0.02 1.75 16 51 H 0.01 0.84 6.20 -2.38 -0.01 0.82 16 52 H -0.04 -2.80 8.05 -2.39 -0.02 -2.82 16 53 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 Total: -1.00 -86.45 397.76 -1.01 -87.46 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.39 Total: 16.43 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.94 Total: 0.88 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -6.14 Total: -102.61 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -3.22 Total: -51.77 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -86.45 -1.01 -87.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273891862.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.888 kcal (2) G-P(sol) polarization free energy of solvation -86.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds