Wall clock time and date at job start Sat Apr 11 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46831 * 2 1 4 4 C 1.53006 * 109.46869 * 239.99912 * 2 1 3 5 5 C 1.52999 * 109.47201 * 120.00142 * 2 1 3 6 6 H 1.09001 * 109.47123 * 180.02562 * 5 2 1 7 7 O 1.42903 * 109.46841 * 299.99757 * 5 2 1 8 8 C 1.52998 * 109.47328 * 59.99775 * 5 2 1 9 9 N 1.46903 * 109.47012 * 179.97438 * 8 5 2 10 10 C 1.48040 * 110.99768 * 190.00006 * 9 8 5 11 11 C 1.53514 * 86.04225 * 137.28939 * 10 9 8 12 12 C 1.48045 * 111.00187 * 289.44273 * 9 8 5 13 13 C 1.52779 * 113.49240 * 222.17774 * 11 10 9 14 14 O 1.43383 * 108.23994 * 273.90342 * 13 11 10 15 15 C 1.42831 * 113.33691 * 294.34986 * 14 13 11 16 16 C 1.50277 * 110.49621 * 51.29452 * 15 14 13 17 17 O 1.21284 * 118.96969 * 161.62420 * 16 15 14 18 18 N 1.34261 * 122.06093 * 341.64574 * 16 15 14 19 19 C 1.46507 * 119.38216 * 181.93301 * 18 16 15 20 20 C 1.53003 * 109.46968 * 274.08958 * 19 18 16 21 21 C 1.50704 * 109.46959 * 174.90124 * 20 19 18 22 22 H 1.07997 * 119.99882 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99656 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00229 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99715 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47262 * 89.99833 * 25 23 21 27 27 H 1.48501 * 109.47345 * 210.00173 * 25 23 21 28 28 H 1.48504 * 109.47088 * 330.00273 * 25 23 21 29 29 H 1.09005 * 109.47308 * 299.99794 * 1 2 3 30 30 H 1.09002 * 109.47564 * 60.00029 * 1 2 3 31 31 H 1.09003 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46738 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47038 * 299.99745 * 3 2 1 34 34 H 1.09001 * 109.47655 * 60.00314 * 3 2 1 35 35 H 1.08993 * 109.46924 * 299.99682 * 4 2 1 36 36 H 1.08996 * 109.46617 * 60.00302 * 4 2 1 37 37 H 1.09001 * 109.46473 * 179.97438 * 4 2 1 38 38 H 0.96701 * 113.99667 * 60.00409 * 7 5 2 39 39 H 1.08997 * 109.46846 * 59.99937 * 8 5 2 40 40 H 1.08994 * 109.47219 * 299.99947 * 8 5 2 41 41 H 1.08999 * 113.78100 * 23.00698 * 10 9 8 42 42 H 1.09000 * 113.78246 * 251.56864 * 10 9 8 43 43 H 1.09000 * 113.77873 * 108.42139 * 12 9 8 44 44 H 1.09000 * 113.77935 * 336.99689 * 12 9 8 45 45 H 1.09002 * 109.72091 * 154.21303 * 13 11 10 46 46 H 1.09000 * 109.70543 * 33.58599 * 13 11 10 47 47 H 1.09004 * 109.27176 * 171.56145 * 15 14 13 48 48 H 1.08999 * 109.26792 * 291.03191 * 15 14 13 49 49 H 1.09001 * 109.47001 * 34.08483 * 19 18 16 50 50 H 1.08992 * 109.47065 * 154.08718 * 19 18 16 51 51 H 1.08995 * 109.46893 * 294.90153 * 20 19 18 52 52 H 1.08997 * 109.47300 * 54.90184 * 20 19 18 53 53 H 0.96994 * 119.99745 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2494 7 8 1.5637 -0.0476 2.4160 8 6 1.5300 -2.1637 1.2493 9 7 2.0202 -2.8564 2.4484 10 6 1.7513 -4.3100 2.3686 11 6 3.1714 -4.4951 2.9216 12 6 3.4780 -3.0994 2.3621 13 6 3.9519 -5.6139 2.2336 14 8 3.6370 -6.8496 2.8891 15 6 4.0921 -6.9045 4.2418 16 6 3.6359 -5.6900 5.0002 17 8 3.6342 -5.7209 6.2127 18 7 3.2298 -4.5719 4.3776 19 6 2.8374 -3.4072 5.1751 20 6 1.3639 -3.5310 5.5678 21 6 0.9932 -2.3988 6.4908 22 1 1.7344 -1.6643 6.7691 23 6 -0.2925 -2.3002 6.9791 24 7 -1.1952 -3.1945 6.6398 25 14 -0.7518 -0.8973 8.1237 26 1 -1.2326 0.2574 7.3234 27 1 -1.8272 -1.3426 9.0459 28 1 0.4396 -0.4914 8.9120 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 0.5997 -0.0095 2.4821 39 1 1.8933 -2.6775 0.3593 40 1 0.4400 -2.1638 1.2493 41 1 1.6246 -4.6783 1.3506 42 1 0.9681 -4.6500 3.0461 43 1 4.0680 -2.4763 3.0343 44 1 3.8623 -3.1094 1.3421 45 1 5.0213 -5.4183 2.3120 46 1 3.6641 -5.6709 1.1838 47 1 3.6920 -7.7986 4.7200 48 1 5.1812 -6.9478 4.2534 49 1 3.4505 -3.3599 6.0751 50 1 2.9822 -2.5000 4.5887 51 1 0.7443 -3.4873 4.6721 52 1 1.2018 -4.4817 6.0757 53 1 -2.0995 -3.1253 6.9836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273891863.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:46 Heat of formation + Delta-G solvation = -115.250662 kcal Electronic energy + Delta-G solvation = -32839.767018 eV Core-core repulsion = 28711.807116 eV Total energy + Delta-G solvation = -4127.959902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.51119 -40.55475 -39.42055 -38.47247 -36.21917 -35.50750 -34.86571 -32.36115 -31.38016 -29.65501 -28.41331 -28.27608 -27.79215 -27.44682 -26.12185 -25.46645 -23.19966 -22.78578 -21.79120 -19.95221 -19.41757 -18.81087 -18.39425 -17.71865 -17.37835 -17.15704 -16.73485 -16.53490 -16.25482 -16.20710 -15.98237 -15.58760 -15.18074 -15.06327 -14.77094 -14.54588 -14.36816 -14.34052 -14.11603 -13.75696 -13.51291 -13.29673 -13.18906 -12.99869 -12.95875 -12.80735 -12.70279 -12.64994 -12.59228 -12.29954 -12.08532 -12.02134 -12.00485 -11.76262 -11.65123 -11.63751 -11.36814 -11.28332 -11.22752 -10.51012 -10.49399 -10.30940 -9.62808 -9.45183 -8.16109 -6.24904 1.36259 1.39248 1.45402 1.50111 1.88282 2.42948 2.66160 2.88424 3.17311 3.28687 3.45995 3.52337 3.62133 3.74266 3.87290 4.02471 4.08165 4.19740 4.21244 4.29225 4.34920 4.38729 4.48599 4.52829 4.58194 4.59032 4.67380 4.69785 4.73829 4.77241 4.85284 4.87094 4.92499 4.93631 5.02908 5.07408 5.10801 5.12663 5.18581 5.28398 5.34234 5.44711 5.49882 5.55353 5.57129 5.75078 5.80665 5.95064 6.17885 6.28308 6.53156 6.88580 6.91565 7.10400 7.41500 8.96068 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007148 B = 0.005495 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3916.076433 B = 5094.637420 C = 8298.044543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.134 4.134 4 C -0.139 4.139 5 C 0.125 3.875 6 H 0.092 0.908 7 O -0.568 6.568 8 C -0.009 4.009 9 N -0.482 5.482 10 C 0.002 3.998 11 C 0.099 3.901 12 C 0.011 3.989 13 C 0.065 3.935 14 O -0.374 6.374 15 C 0.063 3.937 16 C 0.466 3.534 17 O -0.592 6.592 18 N -0.574 5.574 19 C 0.143 3.857 20 C 0.044 3.956 21 C -0.528 4.528 22 H 0.051 0.949 23 C 0.005 3.995 24 N -0.933 5.933 25 Si 0.962 3.038 26 H -0.267 1.267 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.373 0.627 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.092 0.908 46 H 0.151 0.849 47 H 0.134 0.866 48 H 0.121 0.879 49 H 0.033 0.967 50 H 0.094 0.906 51 H 0.017 0.983 52 H -0.043 1.043 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.894 0.986 -23.443 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.191 4.191 4 C -0.196 4.196 5 C 0.066 3.934 6 H 0.110 0.890 7 O -0.374 6.374 8 C -0.138 4.138 9 N -0.205 5.205 10 C -0.127 4.127 11 C 0.012 3.988 12 C -0.118 4.118 13 C -0.012 4.012 14 O -0.292 6.292 15 C -0.016 4.016 16 C 0.255 3.745 17 O -0.473 6.473 18 N -0.304 5.304 19 C 0.021 3.979 20 C 0.007 3.993 21 C -0.567 4.567 22 H 0.069 0.931 23 C -0.193 4.193 24 N -0.573 5.573 25 Si 0.786 3.214 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.194 1.194 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.222 0.778 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.141 0.859 45 H 0.110 0.890 46 H 0.169 0.831 47 H 0.151 0.849 48 H 0.138 0.862 49 H 0.051 0.949 50 H 0.112 0.888 51 H 0.036 0.964 52 H -0.025 1.025 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.985 1.243 -22.251 24.846 hybrid contribution -1.233 0.450 0.692 1.484 sum 9.752 1.693 -21.559 23.723 Atomic orbital electron populations 1.21961 0.94574 1.02062 1.02070 1.21172 0.96117 0.96467 0.95742 1.21751 1.00877 0.95001 1.01521 1.21882 1.01476 1.00411 0.95862 1.21928 0.98406 0.88837 0.84233 0.89010 1.86589 1.27030 1.78935 1.44824 1.23510 1.01199 0.96546 0.92496 1.68731 1.06259 1.09065 1.36421 1.24404 0.96942 0.90068 1.01331 1.22575 0.97523 0.98638 0.80034 1.24322 0.92041 0.93110 1.02326 1.23316 0.99651 0.80186 0.98042 1.88138 1.80641 1.36961 1.23463 1.22754 1.02271 0.94729 0.81834 1.22109 0.77437 0.86270 0.88703 1.90731 1.56481 1.83512 1.16577 1.47513 1.62986 1.13531 1.06356 1.21350 0.96003 0.87402 0.93142 1.19006 0.91988 0.93334 0.95017 1.21460 0.95904 1.10826 1.28466 0.93106 1.25842 0.96414 0.98811 0.98191 1.70119 1.03728 1.36957 1.46537 0.85508 0.77840 0.79334 0.78694 1.19201 1.20847 1.19404 0.93429 0.91384 0.92303 0.92647 0.91816 0.93682 0.91721 0.91763 0.91764 0.77842 0.90356 0.91330 0.87004 0.93166 0.90158 0.85872 0.88982 0.83109 0.84875 0.86167 0.94881 0.88820 0.96436 1.02507 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 7.82 71.98 0.56 -1.96 16 2 C -0.09 -1.52 0.63 -52.18 -0.03 -1.55 16 3 C -0.13 -2.27 8.33 71.98 0.60 -1.67 16 4 C -0.14 -1.59 8.12 71.98 0.58 -1.00 16 5 C 0.13 2.66 2.31 30.59 0.07 2.74 16 6 H 0.09 1.91 7.54 -2.39 -0.02 1.89 16 7 O -0.57 -17.12 12.49 -148.98 -1.86 -18.98 16 8 C -0.01 -0.20 3.77 86.30 0.33 0.13 16 9 N -0.48 -13.68 4.52 -914.33 -4.13 -17.82 16 10 C 0.00 0.06 6.58 86.25 0.57 0.63 16 11 C 0.10 2.56 1.56 5.16 0.01 2.57 16 12 C 0.01 0.24 5.66 86.24 0.49 0.73 16 13 C 0.06 1.08 6.09 71.91 0.44 1.52 16 14 O -0.37 -8.50 10.84 -148.98 -1.61 -10.12 16 15 C 0.06 1.61 6.94 71.10 0.49 2.10 16 16 C 0.47 17.96 7.61 87.60 0.67 18.63 16 17 O -0.59 -29.38 16.55 -3.04 -0.05 -29.44 16 18 N -0.57 -21.55 2.66 -785.50 -2.09 -23.64 16 19 C 0.14 6.73 4.41 86.38 0.38 7.12 16 20 C 0.04 2.58 5.06 29.85 0.15 2.73 16 21 C -0.53 -32.74 9.11 25.60 0.23 -32.50 16 22 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 23 C 0.00 0.28 5.46 84.66 0.46 0.75 16 24 N -0.93 -60.25 13.29 21.45 0.28 -59.97 16 25 Si 0.96 47.64 29.54 68.60 2.03 49.67 16 26 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 27 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 29 H 0.05 0.91 6.78 -2.38 -0.02 0.90 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.00 6.43 -2.39 -0.02 0.99 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 0.93 7.68 -2.39 -0.02 0.91 16 35 H 0.06 0.67 6.43 -2.39 -0.02 0.65 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.37 10.74 7.33 -74.06 -0.54 10.20 16 39 H 0.08 1.14 5.98 -2.39 -0.01 1.12 16 40 H 0.07 1.67 6.43 -2.39 -0.02 1.65 16 41 H 0.11 2.14 7.55 -2.39 -0.02 2.12 16 42 H 0.05 1.97 6.90 -2.39 -0.02 1.95 16 43 H 0.08 2.07 6.99 -2.39 -0.02 2.05 16 44 H 0.12 1.49 7.73 -2.39 -0.02 1.47 16 45 H 0.09 1.11 8.13 -2.39 -0.02 1.09 16 46 H 0.15 1.37 7.86 -2.39 -0.02 1.35 16 47 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 48 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.03 1.71 7.49 -2.39 -0.02 1.69 16 50 H 0.09 4.17 5.44 -2.39 -0.01 4.16 16 51 H 0.02 1.04 6.04 -2.39 -0.01 1.03 16 52 H -0.04 -2.96 8.14 -2.39 -0.02 -2.98 16 53 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -85.67 400.57 -1.08 -86.75 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.36 Total: 22.60 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.00 Total: 0.95 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -5.94 Total: -101.43 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -3.53 Total: -58.53 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -85.67 -1.08 -86.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273891863.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.504 kcal (2) G-P(sol) polarization free energy of solvation -85.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds