Wall clock time and date at job start Sat Apr 11 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 H 1.09001 * 109.47097 * 305.00356 * 5 4 2 7 7 C 1.52994 * 109.47232 * 184.99745 * 5 4 2 8 8 N 1.46503 * 109.47119 * 184.99973 * 7 5 4 9 9 C 1.36930 * 120.00042 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00363 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00305 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99737 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00454 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47249 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47016 * 120.00135 * 13 11 9 16 16 H 1.48502 * 109.47248 * 240.00338 * 13 11 9 17 17 N 1.46505 * 109.46936 * 64.99553 * 5 4 2 18 18 C 1.34769 * 120.00281 * 275.00365 * 17 5 4 19 19 O 1.21282 * 120.00054 * 359.97438 * 18 17 5 20 20 C 1.50704 * 120.00462 * 180.02562 * 18 17 5 21 21 H 1.09008 * 109.85358 * 304.02426 * 20 18 17 22 22 O 1.43348 * 109.87151 * 182.90691 * 20 18 17 23 23 C 1.43980 * 109.98147 * 240.53028 * 22 20 18 24 24 C 1.53996 * 104.52857 * 336.37332 * 23 22 20 25 25 H 1.08997 * 109.50841 * 281.36597 * 24 23 22 26 26 C 1.51586 * 112.09662 * 158.35300 * 24 23 22 27 27 O 1.42675 * 112.31102 * 293.24674 * 26 24 23 28 28 C 1.43257 * 112.52964 * 300.29353 * 27 26 24 29 29 C 1.52720 * 108.26768 * 65.59669 * 28 27 26 30 30 C 1.53117 * 110.61057 * 299.80668 * 29 28 27 31 31 H 1.09001 * 112.28242 * 283.02583 * 30 29 28 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 34 34 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 35 35 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 38 38 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 39 39 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 40 40 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 41 41 H 1.08995 * 109.47345 * 305.00069 * 7 5 4 42 42 H 1.08994 * 109.47194 * 65.00214 * 7 5 4 43 43 H 0.97001 * 119.99966 * 0.02562 * 8 7 5 44 44 H 0.97001 * 120.00400 * 179.97438 * 12 11 9 45 45 H 0.97006 * 119.99775 * 95.00026 * 17 5 4 46 46 H 1.08999 * 110.42221 * 217.61508 * 23 22 20 47 47 H 1.08996 * 110.52815 * 95.18555 * 23 22 20 48 48 H 1.09003 * 108.46921 * 172.68666 * 26 24 23 49 49 H 1.09000 * 108.97707 * 54.15112 * 26 24 23 50 50 H 1.09002 * 109.70576 * 305.90511 * 28 27 26 51 51 H 1.09000 * 109.73792 * 185.31210 * 28 27 26 52 52 H 1.08997 * 109.24979 * 179.51003 * 29 28 27 53 53 H 1.09005 * 109.21264 * 60.07552 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8309 -1.1881 6 1 3.9954 0.1612 -1.0528 7 6 4.0851 -1.4392 -2.4920 8 7 5.5304 -1.6549 -2.3877 9 6 6.2199 -2.1945 -3.4405 10 1 5.6983 -2.4608 -4.3479 11 6 7.5894 -2.3983 -3.3419 12 7 8.2252 -2.0733 -2.2363 13 14 8.5301 -3.1338 -4.7784 14 1 7.5916 -3.4091 -5.8958 15 1 9.5707 -2.1758 -5.2311 16 1 9.1761 -4.4006 -4.3504 17 7 3.9480 -1.6871 -0.0627 18 6 4.0652 -1.1630 1.1734 19 8 3.8540 0.0176 1.3540 20 6 4.4600 -2.0435 2.3310 21 1 3.7671 -2.8812 2.4120 22 8 4.4533 -1.2830 3.5461 23 6 5.7683 -1.2806 4.1322 24 6 6.4452 -2.5435 3.5679 25 1 6.0904 -3.4198 4.1103 26 6 7.9572 -2.4565 3.6306 27 8 8.4783 -1.4499 2.7641 28 6 8.1382 -1.6776 1.3912 29 6 6.6239 -1.5444 1.2447 30 6 5.9049 -2.5721 2.1230 31 1 5.9265 -3.5725 1.6906 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 3.1299 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6767 1.9564 0.8899 39 1 1.6054 -1.7198 -1.2952 40 1 1.7516 -0.1583 -2.1370 41 1 3.5877 -2.3922 -2.6722 42 1 3.8779 -0.7593 -3.3182 43 1 5.9989 -1.4160 -1.5725 44 1 9.1822 -2.2160 -2.1672 45 1 4.1173 -2.6312 -0.2072 46 1 5.7006 -1.3385 5.2186 47 1 6.3185 -0.3884 3.8332 48 1 8.3710 -3.4227 3.3419 49 1 8.2573 -2.2338 4.6546 50 1 8.4490 -2.6801 1.0970 51 1 8.6347 -0.9393 0.7616 52 1 6.3480 -1.7063 0.2028 53 1 6.3214 -0.5410 1.5447 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319621023.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:10 Heat of formation + Delta-G solvation = -141.641772 kcal Electronic energy + Delta-G solvation = -33335.506019 eV Core-core repulsion = 29206.401712 eV Total energy + Delta-G solvation = -4129.104307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25693 -40.50302 -38.68570 -37.65385 -36.45108 -35.09519 -34.16404 -33.04860 -32.60057 -30.81923 -29.45375 -27.95635 -27.13368 -26.40478 -24.96911 -24.52031 -24.13731 -22.15961 -21.12511 -20.77244 -20.49079 -19.18574 -18.32275 -17.83382 -17.43534 -17.16400 -16.81790 -16.70355 -16.28224 -16.16288 -15.79214 -15.40435 -15.33760 -15.06940 -14.77566 -14.60488 -14.49856 -14.25988 -14.01457 -13.69706 -13.67837 -13.24775 -13.06273 -13.00741 -12.95746 -12.92632 -12.80916 -12.58327 -12.52292 -12.30907 -12.06935 -11.97050 -11.84033 -11.68557 -11.51021 -11.38711 -11.23233 -11.20119 -11.08163 -10.92100 -10.50708 -10.17172 -9.81997 -8.92372 -7.86579 -5.14379 1.49586 1.52743 1.59734 1.71448 2.10868 2.59645 2.89556 3.00379 3.21945 3.46710 3.56812 3.65285 3.71659 3.96236 3.98990 4.04656 4.08198 4.09673 4.22026 4.26953 4.32276 4.39427 4.40714 4.45115 4.56873 4.65166 4.67214 4.68850 4.73882 4.81335 4.87934 4.89606 4.90963 4.94193 4.95476 5.00420 5.02101 5.09982 5.17061 5.23821 5.25745 5.29723 5.40696 5.56617 5.58691 5.64653 5.69451 5.83615 6.22368 6.34708 6.69170 7.40068 7.42995 8.14352 8.41955 9.34372 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007592 B = 0.005836 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3686.969168 B = 4796.572737 C = 7967.402178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.132 4.132 4 C -0.113 4.113 5 C 0.148 3.852 6 H 0.060 0.940 7 C 0.144 3.856 8 N -0.741 5.741 9 C -0.246 4.246 10 H 0.071 0.929 11 C -0.059 4.059 12 N -0.947 5.947 13 Si 0.962 3.038 14 H -0.273 1.273 15 H -0.302 1.302 16 H -0.294 1.294 17 N -0.704 5.704 18 C 0.504 3.496 19 O -0.552 6.552 20 C 0.067 3.933 21 H 0.129 0.871 22 O -0.373 6.373 23 C 0.055 3.945 24 C -0.142 4.142 25 H 0.129 0.871 26 C 0.064 3.936 27 O -0.398 6.398 28 C 0.082 3.918 29 C -0.144 4.144 30 C -0.099 4.099 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.379 0.621 44 H 0.249 0.751 45 H 0.407 0.593 46 H 0.115 0.885 47 H 0.041 0.959 48 H 0.066 0.934 49 H 0.118 0.882 50 H 0.056 0.944 51 H 0.073 0.927 52 H 0.079 0.921 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.581 -4.235 11.919 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 C -0.189 4.189 4 C -0.151 4.151 5 C 0.043 3.957 6 H 0.078 0.922 7 C 0.017 3.983 8 N -0.386 5.386 9 C -0.378 4.378 10 H 0.089 0.911 11 C -0.253 4.253 12 N -0.596 5.596 13 Si 0.792 3.208 14 H -0.198 1.198 15 H -0.230 1.230 16 H -0.221 1.221 17 N -0.357 5.357 18 C 0.291 3.709 19 O -0.430 6.430 20 C 0.006 3.994 21 H 0.147 0.853 22 O -0.291 6.291 23 C -0.021 4.021 24 C -0.161 4.161 25 H 0.147 0.853 26 C -0.013 4.013 27 O -0.317 6.317 28 C 0.005 3.995 29 C -0.182 4.182 30 C -0.118 4.118 31 H 0.142 0.858 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.214 0.786 44 H 0.058 0.942 45 H 0.242 0.758 46 H 0.133 0.867 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.135 0.865 50 H 0.074 0.926 51 H 0.091 0.909 52 H 0.097 0.903 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.803 -3.173 12.027 15.837 hybrid contribution 1.194 -0.496 -1.101 1.698 sum -8.609 -3.669 10.926 14.386 Atomic orbital electron populations 1.21802 0.94379 1.01873 1.01676 1.21059 0.95737 0.96085 0.97843 1.21743 1.01140 0.96168 0.99863 1.21950 0.92967 1.01614 0.98618 1.21126 0.95433 0.94020 0.85134 0.92197 1.21092 0.84763 0.97994 0.94461 1.42572 1.03277 1.75868 1.16854 1.19528 0.90813 1.32502 0.94910 0.91070 1.25315 0.97380 1.03228 0.99414 1.69761 1.08097 1.54725 1.27065 0.85262 0.78519 0.77185 0.79784 1.19777 1.22989 1.22110 1.45898 1.69833 1.13247 1.06725 1.21071 0.76108 0.89061 0.84649 1.90687 1.50329 1.17360 1.84637 1.23031 0.99118 0.93052 0.84179 0.85348 1.88520 1.30659 1.74344 1.35613 1.23434 0.82234 0.97120 0.99271 1.22857 0.97590 1.00516 0.95126 0.85324 1.22180 0.91061 0.92288 0.95772 1.88094 1.75385 1.50482 1.17706 1.22219 0.94166 1.01234 0.81857 1.22139 0.96756 0.98103 1.01162 1.22720 0.91912 1.00521 0.96615 0.85800 0.92136 0.93195 0.92143 0.92462 0.93470 0.93196 0.94353 0.90315 0.90312 0.94254 0.95132 0.78649 0.94239 0.75767 0.86688 0.94074 0.91615 0.86451 0.92601 0.90875 0.90256 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.19 71.98 0.66 -2.37 16 2 C -0.09 -2.40 2.38 -10.79 -0.03 -2.43 16 3 C -0.13 -3.99 8.03 71.98 0.58 -3.42 16 4 C -0.11 -2.91 4.36 30.59 0.13 -2.77 16 5 C 0.15 4.72 2.33 44.99 0.10 4.82 16 6 H 0.06 2.30 5.92 -2.39 -0.01 2.29 16 7 C 0.14 5.23 5.82 86.38 0.50 5.73 16 8 N -0.74 -34.20 5.43 -343.47 -1.87 -36.07 16 9 C -0.25 -12.69 9.99 84.04 0.84 -11.85 16 10 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 11 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 12 N -0.95 -52.12 13.06 21.65 0.28 -51.84 16 13 Si 0.96 43.86 29.55 68.60 2.03 45.89 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 16 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 17 N -0.70 -20.87 3.45 -442.54 -1.52 -22.39 16 18 C 0.50 16.02 3.55 87.66 0.31 16.33 16 19 O -0.55 -21.32 11.30 15.73 0.18 -21.14 16 20 C 0.07 1.75 3.75 30.62 0.11 1.87 16 21 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 22 O -0.37 -10.93 10.58 -130.22 -1.38 -12.31 16 23 C 0.06 1.33 6.79 72.32 0.49 1.82 16 24 C -0.14 -2.86 3.11 -10.48 -0.03 -2.89 16 25 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 26 C 0.06 1.35 6.14 71.52 0.44 1.79 16 27 O -0.40 -12.36 10.61 -148.98 -1.58 -13.94 16 28 C 0.08 2.85 6.82 71.89 0.49 3.34 16 29 C -0.14 -4.88 3.96 30.54 0.12 -4.76 16 30 C -0.10 -2.45 3.56 -9.54 -0.03 -2.49 16 31 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.79 5.19 -2.39 -0.01 1.77 16 36 H 0.05 1.71 4.76 -2.39 -0.01 1.70 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.38 18.43 5.20 -92.71 -0.48 17.94 16 44 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 45 H 0.41 11.09 8.60 -92.70 -0.80 10.30 16 46 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.04 1.23 7.55 -2.39 -0.02 1.21 16 48 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 49 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.06 1.94 8.11 -2.39 -0.02 1.92 16 51 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 52 H 0.08 3.12 4.87 -2.39 -0.01 3.11 16 53 H 0.04 1.66 6.43 -2.38 -0.02 1.65 16 Total: -1.00 -64.98 393.61 0.93 -64.05 By element: Atomic # 1 Polarization: 48.06 SS G_CDS: -0.36 Total: 47.70 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 5.16 Total: 0.05 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -3.11 Total: -110.30 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -2.78 Total: -47.39 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -64.98 0.93 -64.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319621023.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.593 kcal (2) G-P(sol) polarization free energy of solvation -64.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds