Wall clock time and date at job start Sat Apr 11 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47073 * 2 1 4 4 C 1.53006 * 109.47238 * 240.00371 * 2 1 3 5 5 C 1.52998 * 109.47649 * 119.99857 * 2 1 3 6 6 H 1.08994 * 109.49237 * 288.03789 * 5 2 1 7 7 O 1.43031 * 109.57065 * 167.97175 * 5 2 1 8 8 C 1.42897 * 114.13363 * 178.89442 * 7 5 2 9 9 C 1.53087 * 109.41829 * 61.15854 * 8 7 5 10 10 C 1.53185 * 109.16281 * 302.39081 * 9 8 7 11 11 C 1.53099 * 109.47760 * 48.06227 * 5 2 1 12 12 H 1.09002 * 109.52196 * 297.56389 * 11 5 2 13 13 C 1.53001 * 109.51923 * 57.68845 * 11 5 2 14 14 N 1.46501 * 109.47069 * 173.12124 * 13 11 5 15 15 C 1.34773 * 120.00163 * 180.02562 * 14 13 11 16 16 O 1.21351 * 120.00157 * 359.97438 * 15 14 13 17 17 C 1.49450 * 119.99840 * 179.97438 * 15 14 13 18 18 O 1.21348 * 120.00435 * 359.97438 * 17 15 14 19 19 N 1.34782 * 119.99920 * 180.27243 * 17 15 14 20 20 C 1.46496 * 120.00019 * 179.72650 * 19 17 15 21 21 C 1.53000 * 109.47077 * 180.02562 * 20 19 17 22 22 C 1.50702 * 109.47351 * 179.97438 * 21 20 19 23 23 H 1.07997 * 119.99380 * 359.97438 * 22 21 20 24 24 C 1.37869 * 120.00182 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00449 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00204 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47426 * 89.99793 * 26 24 22 28 28 H 1.48498 * 109.47451 * 210.00137 * 26 24 22 29 29 H 1.48503 * 109.46832 * 329.99890 * 26 24 22 30 30 H 1.09008 * 109.47277 * 299.99414 * 1 2 3 31 31 H 1.09000 * 109.47436 * 59.99756 * 1 2 3 32 32 H 1.09002 * 109.47366 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47457 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47188 * 300.00396 * 3 2 1 35 35 H 1.09002 * 109.47235 * 59.99961 * 3 2 1 36 36 H 1.08999 * 109.46798 * 341.71953 * 4 2 1 37 37 H 1.08998 * 109.47024 * 101.71943 * 4 2 1 38 38 H 1.09002 * 109.46901 * 221.72398 * 4 2 1 39 39 H 1.09008 * 109.48085 * 301.17275 * 8 7 5 40 40 H 1.09002 * 109.48014 * 181.14418 * 8 7 5 41 41 H 1.09003 * 109.52457 * 182.48755 * 9 8 7 42 42 H 1.08995 * 109.57687 * 62.33177 * 9 8 7 43 43 H 1.08998 * 109.54330 * 297.11361 * 10 9 8 44 44 H 1.09001 * 109.54339 * 176.84710 * 10 9 8 45 45 H 1.08998 * 109.47267 * 53.11531 * 13 11 5 46 46 H 1.09005 * 109.46804 * 293.11553 * 13 11 5 47 47 H 0.97000 * 119.99970 * 359.97438 * 14 13 11 48 48 H 0.97000 * 119.99728 * 359.72103 * 19 17 15 49 49 H 1.09003 * 109.46997 * 299.99817 * 20 19 17 50 50 H 1.08995 * 109.47469 * 59.99617 * 20 19 17 51 51 H 1.09003 * 109.46751 * 299.99592 * 21 20 19 52 52 H 1.08995 * 109.47590 * 59.99316 * 21 20 19 53 53 H 0.96998 * 120.00320 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 1.8614 -0.0996 2.1265 7 8 3.4425 -0.9705 1.1194 8 6 4.0272 -1.6216 2.2490 9 6 3.3665 -2.9884 2.4470 10 6 1.8573 -2.7962 2.6257 11 6 1.3008 -2.0525 1.4077 12 1 0.2369 -1.8635 1.5511 13 6 1.5045 -2.9030 0.1523 14 7 0.9376 -4.2364 0.3686 15 6 1.0018 -5.1625 -0.6085 16 8 1.5287 -4.8917 -1.6676 17 6 0.4240 -6.5230 -0.3876 18 8 -0.1025 -6.7940 0.6716 19 7 0.4930 -7.4509 -1.3627 20 6 -0.0680 -8.7864 -1.1440 21 6 0.1415 -9.6390 -2.3970 22 6 -0.4351 -11.0131 -2.1719 23 1 -0.9037 -11.2541 -1.2292 24 6 -0.3644 -11.9623 -3.1693 25 7 -0.8671 -13.1616 -2.9727 26 14 0.4467 -11.5455 -4.7996 27 1 1.8941 -11.8704 -4.7298 28 1 -0.1867 -12.3373 -5.8844 29 1 0.2776 -10.0971 -5.0805 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.2411 -1.3342 -1.6665 37 1 2.3579 0.0138 -1.9888 38 1 2.8842 -1.3570 -0.9826 39 1 3.8746 -1.0117 3.1395 40 1 5.0955 -1.7555 2.0787 41 1 3.7802 -3.4678 3.3342 42 1 3.5533 -3.6141 1.5744 43 1 1.6682 -2.2129 3.5269 44 1 1.3734 -3.7691 2.7112 45 1 2.5704 -2.9909 -0.0580 46 1 1.0053 -2.4287 -0.6927 47 1 0.5168 -4.4530 1.2152 48 1 0.9141 -7.2344 -2.2093 49 1 0.4322 -9.2565 -0.2973 50 1 -1.1345 -8.7028 -0.9351 51 1 -0.3586 -9.1691 -3.2439 52 1 1.2080 -9.7226 -2.6055 53 1 -0.8177 -13.8292 -3.6745 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323013054.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:16 Heat of formation + Delta-G solvation = -151.472025 kcal Electronic energy + Delta-G solvation = -30940.105271 eV Core-core repulsion = 26810.574693 eV Total energy + Delta-G solvation = -4129.530579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04215 -41.25460 -39.53681 -37.38621 -37.07505 -36.40894 -34.84192 -33.98136 -32.13069 -31.57113 -29.13693 -28.22029 -27.88329 -26.76443 -25.90256 -24.62596 -23.65706 -22.65668 -21.52258 -20.54312 -20.01819 -19.24304 -19.02678 -17.90791 -17.59904 -17.07467 -17.05933 -16.79671 -16.38674 -16.22676 -16.15584 -15.65741 -15.53355 -15.10215 -14.69884 -14.67502 -14.63276 -14.57485 -14.29892 -14.02361 -13.68680 -13.40473 -13.38026 -13.07945 -13.01570 -12.93363 -12.85252 -12.56835 -12.27030 -12.23024 -12.20148 -12.11775 -11.90508 -11.79125 -11.68111 -11.52134 -11.49335 -11.31484 -10.90967 -10.79777 -10.74924 -10.35173 -10.26568 -10.12795 -8.30898 -6.37660 0.32074 1.31869 1.39098 1.40571 1.51816 2.11913 2.35617 2.64048 2.81562 3.04171 3.42110 3.53538 3.65206 3.77303 3.94447 4.02813 4.09863 4.11994 4.20666 4.25355 4.35207 4.37762 4.47441 4.58538 4.60014 4.68233 4.71240 4.78546 4.81475 4.82009 4.87888 4.93716 4.97389 4.98899 5.05122 5.09343 5.13931 5.14359 5.21199 5.24794 5.28627 5.33317 5.35962 5.41833 5.51565 5.56278 5.57879 5.91265 6.19805 6.34749 6.35035 6.67462 6.73994 6.92433 7.26903 8.85237 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.002084 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.807482 B =13434.895146 C =13902.646399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.152 4.152 5 C 0.112 3.888 6 H 0.078 0.922 7 O -0.388 6.388 8 C 0.060 3.940 9 C -0.159 4.159 10 C -0.122 4.122 11 C -0.127 4.127 12 H 0.106 0.894 13 C 0.109 3.891 14 N -0.686 5.686 15 C 0.512 3.488 16 O -0.540 6.540 17 C 0.500 3.500 18 O -0.549 6.549 19 N -0.688 5.688 20 C 0.142 3.858 21 C -0.017 4.017 22 C -0.535 4.535 23 H 0.036 0.964 24 C 0.007 3.993 25 N -0.947 5.947 26 Si 0.953 3.047 27 H -0.266 1.266 28 H -0.285 1.285 29 H -0.242 1.242 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.416 0.584 48 H 0.417 0.583 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.035 0.965 52 H 0.033 0.967 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.901 34.144 10.593 36.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 C -0.192 4.192 4 C -0.209 4.209 5 C 0.054 3.946 6 H 0.096 0.904 7 O -0.307 6.307 8 C -0.017 4.017 9 C -0.196 4.196 10 C -0.159 4.159 11 C -0.146 4.146 12 H 0.124 0.876 13 C -0.012 4.012 14 N -0.340 5.340 15 C 0.292 3.708 16 O -0.418 6.418 17 C 0.280 3.720 18 O -0.428 6.428 19 N -0.340 5.340 20 C 0.019 3.981 21 C -0.055 4.055 22 C -0.574 4.574 23 H 0.055 0.945 24 C -0.190 4.190 25 N -0.587 5.587 26 Si 0.775 3.225 27 H -0.191 1.191 28 H -0.211 1.211 29 H -0.165 1.165 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.254 0.746 48 H 0.254 0.746 49 H 0.077 0.923 50 H 0.078 0.922 51 H 0.054 0.946 52 H 0.052 0.948 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.981 34.042 10.360 36.467 hybrid contribution 0.041 -0.957 -0.395 1.036 sum 8.022 33.085 9.965 35.472 Atomic orbital electron populations 1.22065 0.92892 1.02404 1.03033 1.20595 0.96002 0.95874 0.93639 1.21859 1.01067 0.94122 1.02199 1.22300 1.01210 1.00424 0.96944 1.22121 0.80844 0.93248 0.98419 0.90407 1.87942 1.22209 1.78991 1.41606 1.22655 0.97870 0.91936 0.89192 1.22198 0.96389 0.98472 1.02573 1.21698 0.95453 1.00979 0.97802 1.22132 1.02643 0.95858 0.93996 0.87590 1.22370 0.99312 0.79975 0.99574 1.45930 1.57941 1.12821 1.17277 1.19924 0.80517 0.85623 0.84739 1.90753 1.44264 1.80514 1.26268 1.20393 0.80742 0.86427 0.84399 1.90728 1.44863 1.80991 1.26192 1.45988 1.57583 1.12535 1.17895 1.21277 0.97895 0.79670 0.99229 1.19694 0.97683 0.93763 0.94375 1.21188 1.38372 0.96560 1.01254 0.94532 1.25991 0.95572 0.94436 1.03035 1.70054 1.47420 1.05500 1.35689 0.85628 0.78829 0.79974 0.78037 1.19129 1.21099 1.16474 0.91117 0.91773 0.92255 0.92928 0.92197 0.91889 0.92532 0.92710 0.92021 0.91736 0.88549 0.89822 0.92921 0.89455 0.91545 0.91308 0.89060 0.74592 0.74618 0.92266 0.92197 0.94632 0.94823 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.45 71.98 0.54 -0.84 16 2 C -0.06 -0.70 0.62 -52.18 -0.03 -0.73 16 3 C -0.14 -1.40 8.13 71.98 0.59 -0.81 16 4 C -0.15 -2.34 7.48 71.98 0.54 -1.80 16 5 C 0.11 1.27 1.87 30.63 0.06 1.32 16 6 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 7 O -0.39 -5.71 8.12 -148.98 -1.21 -6.92 16 8 C 0.06 0.68 6.84 72.01 0.49 1.17 16 9 C -0.16 -1.96 5.77 30.69 0.18 -1.78 16 10 C -0.12 -1.32 5.33 30.71 0.16 -1.16 16 11 C -0.13 -1.48 1.84 -10.70 -0.02 -1.50 16 12 H 0.11 0.98 6.48 -2.39 -0.02 0.96 16 13 C 0.11 1.90 2.98 86.38 0.26 2.16 16 14 N -0.69 -14.28 5.22 -464.41 -2.42 -16.70 16 15 C 0.51 14.23 7.89 87.27 0.69 14.92 16 16 O -0.54 -17.05 16.48 -3.25 -0.05 -17.10 16 17 C 0.50 16.13 7.89 87.27 0.69 16.82 16 18 O -0.55 -19.78 16.48 -3.24 -0.05 -19.83 16 19 N -0.69 -23.11 5.55 -464.42 -2.58 -25.69 16 20 C 0.14 5.67 5.61 86.38 0.48 6.16 16 21 C -0.02 -0.78 4.16 29.85 0.12 -0.65 16 22 C -0.54 -30.22 9.66 25.60 0.25 -29.97 16 23 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 24 C 0.01 0.42 5.47 84.65 0.46 0.88 16 25 N -0.95 -58.64 13.96 21.44 0.30 -58.34 16 26 Si 0.95 42.98 27.47 68.60 1.88 44.86 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 29 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 30 H 0.07 0.48 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.61 5.44 -2.39 -0.01 0.60 16 33 H 0.05 0.66 8.05 -2.39 -0.02 0.64 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 36 H 0.06 0.93 5.61 -2.39 -0.01 0.92 16 37 H 0.05 0.81 7.69 -2.39 -0.02 0.79 16 38 H 0.06 1.15 4.99 -2.39 -0.01 1.14 16 39 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 0.89 6.78 -2.39 -0.02 0.88 16 43 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.07 0.81 6.40 -2.39 -0.02 0.79 16 45 H 0.07 1.45 5.28 -2.39 -0.01 1.44 16 46 H 0.09 1.67 3.73 -2.38 -0.01 1.66 16 47 H 0.42 7.73 6.34 -92.71 -0.59 7.14 16 48 H 0.42 12.77 7.94 -92.71 -0.74 12.04 16 49 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 51 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 52 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 53 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -69.04 398.32 0.87 -68.17 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.45 Total: 27.39 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.45 Total: 4.16 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -4.70 Total: -100.73 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -1.32 Total: -43.86 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Total: -69.04 0.87 -68.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323013054.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.305 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds