Wall clock time and date at job start Sat Apr 11 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47256 * 2 1 4 4 C 1.53000 * 109.46988 * 240.00207 * 2 1 3 5 5 C 1.52992 * 109.47296 * 120.00218 * 2 1 3 6 6 N 1.46500 * 109.47069 * 65.86489 * 5 2 1 7 7 C 1.46502 * 119.99926 * 276.05531 * 6 5 2 8 8 C 1.53006 * 109.47345 * 264.34746 * 7 6 5 9 9 O 1.42901 * 109.46926 * 64.99831 * 8 7 6 10 10 C 1.34774 * 120.00361 * 96.05627 * 6 5 2 11 11 O 1.21350 * 119.99862 * 3.92334 * 10 6 5 12 12 C 1.49447 * 120.00485 * 183.92626 * 10 6 5 13 13 O 1.21355 * 120.00070 * 282.00753 * 12 10 6 14 14 N 1.34773 * 120.00364 * 102.00195 * 12 10 6 15 15 C 1.46925 * 120.63161 * 177.06995 * 14 12 10 16 16 C 1.53188 * 108.89729 * 233.56129 * 15 14 12 17 17 C 1.53081 * 109.29641 * 305.58109 * 16 15 14 18 18 C 1.50696 * 109.44472 * 181.23340 * 17 16 15 19 19 H 1.07995 * 119.99993 * 239.80056 * 18 17 16 20 20 C 1.37875 * 119.99883 * 59.79257 * 18 17 16 21 21 N 1.31519 * 120.00130 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00132 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46779 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47290 * 120.00036 * 22 20 18 25 25 H 1.48503 * 109.47192 * 240.00289 * 22 20 18 26 26 C 1.53043 * 109.65572 * 61.14720 * 17 16 15 27 27 C 1.46924 * 120.63233 * 357.09743 * 14 12 10 28 28 H 1.09002 * 109.47136 * 299.99863 * 1 2 3 29 29 H 1.09002 * 109.46771 * 59.99730 * 1 2 3 30 30 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46765 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.46856 * 300.00111 * 3 2 1 33 33 H 1.08998 * 109.46558 * 60.00346 * 3 2 1 34 34 H 1.09000 * 109.47301 * 307.58927 * 4 2 1 35 35 H 1.08999 * 109.47219 * 67.59091 * 4 2 1 36 36 H 1.09007 * 109.47069 * 187.58834 * 4 2 1 37 37 H 1.09000 * 109.47528 * 305.86706 * 5 2 1 38 38 H 1.08995 * 109.47803 * 185.86404 * 5 2 1 39 39 H 1.08998 * 109.47238 * 24.34710 * 7 6 5 40 40 H 1.09005 * 109.47388 * 144.34929 * 7 6 5 41 41 H 1.08995 * 109.47365 * 184.99958 * 8 7 6 42 42 H 1.09003 * 109.47021 * 305.00055 * 8 7 6 43 43 H 0.96704 * 113.99887 * 180.02562 * 9 8 7 44 44 H 1.09007 * 109.59030 * 353.42417 * 15 14 12 45 45 H 1.09007 * 109.58598 * 113.70335 * 15 14 12 46 46 H 1.08997 * 109.49771 * 65.38847 * 16 15 14 47 47 H 1.09005 * 109.50128 * 185.48655 * 16 15 14 48 48 H 1.08998 * 109.34386 * 301.13112 * 17 16 15 49 49 H 0.96996 * 119.99816 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.49670 * 178.75180 * 26 17 16 51 51 H 1.09001 * 109.52340 * 58.67372 * 26 17 16 52 52 H 1.08998 * 109.58995 * 246.15569 * 27 14 12 53 53 H 1.09000 * 109.58368 * 6.43740 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 7 1.6703 -2.1372 1.1806 7 6 0.3407 -2.5691 1.6186 8 6 0.4126 -3.0493 3.0695 9 8 0.7520 -1.9510 3.9184 10 6 2.5534 -3.0425 0.7147 11 8 3.6782 -2.6963 0.4189 12 6 2.1474 -4.4726 0.5622 13 8 2.0941 -5.1954 1.5355 14 7 1.8402 -4.9597 -0.6564 15 6 1.5014 -6.3786 -0.8318 16 6 2.4012 -6.9726 -1.9200 17 6 2.2777 -6.1318 -3.1932 18 6 3.1384 -6.7308 -4.2755 19 1 3.9333 -6.1486 -4.7175 20 6 2.9111 -8.0224 -4.7012 21 7 1.9429 -8.7314 -4.1631 22 14 3.9784 -8.7653 -6.0422 23 1 4.9900 -7.7693 -6.4783 24 1 4.6667 -9.9712 -5.5159 25 1 3.1274 -9.1459 -7.1982 26 6 2.7370 -4.6995 -2.9108 27 6 1.8383 -4.0821 -1.8347 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.5701 -1.7022 -1.3198 35 1 1.7917 -0.1350 -2.1340 36 1 3.1215 -0.8403 -1.1840 37 1 1.5935 -0.2717 2.1361 38 1 3.1249 -0.6313 1.3033 39 1 -0.3549 -1.7331 1.5466 40 1 -0.0042 -3.3845 0.9827 41 1 -0.5551 -3.4530 3.3671 42 1 1.1728 -3.8255 3.1581 43 1 0.8157 -2.1829 4.8551 44 1 1.6616 -6.9112 0.1058 45 1 0.4572 -6.4707 -1.1305 46 1 3.4368 -6.9647 -1.5802 47 1 2.0936 -7.9977 -2.1270 48 1 1.2379 -6.1219 -3.5199 49 1 1.7833 -9.6401 -4.4623 50 1 2.6689 -4.1088 -3.8243 51 1 3.7691 -4.7102 -2.5606 52 1 0.8223 -3.9868 -2.2177 53 1 2.2184 -3.0986 -1.5584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325214434.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:36 Heat of formation + Delta-G solvation = -145.096857 kcal Electronic energy + Delta-G solvation = -32802.845916 eV Core-core repulsion = 28673.591786 eV Total energy + Delta-G solvation = -4129.254131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.28930 -40.35052 -38.67368 -38.47050 -37.65559 -35.53032 -35.44345 -33.01453 -32.08473 -30.59271 -28.74242 -28.35152 -28.11791 -27.60123 -25.50951 -24.47742 -24.04726 -23.06103 -21.20987 -20.13168 -19.53444 -19.11127 -18.56453 -18.31023 -17.89137 -17.52215 -16.83510 -16.51472 -16.26992 -15.95220 -15.39915 -15.33543 -15.11498 -14.95778 -14.86196 -14.63608 -14.55047 -14.38204 -14.04757 -13.93187 -13.70817 -13.67541 -13.23117 -13.09335 -12.95875 -12.85656 -12.67519 -12.54036 -12.46041 -12.45068 -12.27544 -12.19280 -12.01969 -11.97182 -11.60215 -11.49000 -11.48170 -11.02517 -10.92563 -10.87987 -10.62947 -10.41908 -9.81211 -9.78242 -8.09585 -6.22224 0.84606 1.09531 1.39319 1.42894 1.47656 1.52703 2.25138 2.43303 3.01550 3.17541 3.30014 3.80425 3.84385 3.89846 4.00477 4.03031 4.15562 4.18242 4.23009 4.40209 4.42009 4.42805 4.48135 4.56693 4.63375 4.65129 4.72226 4.75094 4.81776 4.84746 4.87926 4.89873 4.96657 5.05843 5.08233 5.10165 5.14300 5.19462 5.29448 5.33595 5.39449 5.42484 5.50041 5.52688 5.63075 5.94663 5.97621 6.05337 6.13658 6.37130 6.66345 6.68985 6.84824 6.87210 7.45652 8.94288 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.003248 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.056485 B = 8617.392693 C = 9638.349880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.134 4.134 4 C -0.150 4.150 5 C 0.125 3.875 6 N -0.571 5.571 7 C 0.094 3.906 8 C 0.055 3.945 9 O -0.579 6.579 10 C 0.519 3.481 11 O -0.544 6.544 12 C 0.506 3.494 13 O -0.550 6.550 14 N -0.578 5.578 15 C 0.119 3.881 16 C -0.115 4.115 17 C 0.048 3.952 18 C -0.534 4.534 19 H 0.048 0.952 20 C 0.018 3.982 21 N -0.911 5.911 22 Si 0.948 3.052 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.278 1.278 26 C -0.115 4.115 27 C 0.100 3.900 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.395 0.605 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.017 0.983 47 H 0.082 0.918 48 H 0.015 0.985 49 H 0.262 0.738 50 H 0.074 0.926 51 H 0.036 0.964 52 H 0.094 0.906 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.837 18.802 12.615 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.192 4.192 4 C -0.207 4.207 5 C 0.004 3.996 6 N -0.303 5.303 7 C -0.028 4.028 8 C -0.023 4.023 9 O -0.387 6.387 10 C 0.302 3.698 11 O -0.421 6.421 12 C 0.289 3.711 13 O -0.429 6.429 14 N -0.311 5.311 15 C -0.003 4.003 16 C -0.153 4.153 17 C 0.029 3.971 18 C -0.572 4.572 19 H 0.066 0.934 20 C -0.181 4.181 21 N -0.551 5.551 22 Si 0.774 3.226 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.203 1.203 26 C -0.153 4.153 27 C -0.022 4.022 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.245 0.755 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.036 0.964 47 H 0.100 0.900 48 H 0.033 0.967 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.055 0.945 52 H 0.112 0.888 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.365 18.757 12.382 23.981 hybrid contribution 1.035 -1.511 -0.335 1.862 sum -7.330 17.245 12.047 22.277 Atomic orbital electron populations 1.22045 0.92964 1.02183 1.02947 1.20952 0.97179 0.96096 0.93974 1.21771 1.00769 0.93678 1.02986 1.22111 1.00424 1.00187 0.98026 1.21821 1.00979 0.77765 0.99069 1.47818 1.14184 1.07551 1.60760 1.22212 0.83689 1.02907 0.93971 1.22678 1.00420 0.88788 0.90451 1.86372 1.93616 1.35946 1.22794 1.20134 0.85792 0.85942 0.77953 1.90776 1.20755 1.79356 1.51186 1.20499 0.77646 0.89137 0.83851 1.90711 1.53806 1.59812 1.38573 1.48298 1.64619 1.11255 1.06879 1.21799 0.99714 0.79022 0.99726 1.21826 0.96226 1.02506 0.94776 1.18611 0.95665 0.90451 0.92346 1.21562 1.16612 0.98847 1.20165 0.93390 1.25630 0.96376 0.97600 0.98521 1.69945 1.31649 1.10288 1.43212 0.85658 0.79079 0.78230 0.79592 1.19636 1.20989 1.20335 1.21847 0.97870 0.98108 0.97514 1.22306 1.01793 0.92998 0.85089 0.91064 0.91727 0.92431 0.93285 0.91429 0.91130 0.93230 0.91373 0.94120 0.87874 0.91468 0.85316 0.89438 0.90252 0.94593 0.75528 0.90391 0.89854 0.96423 0.89971 0.96737 0.92919 0.90739 0.94517 0.88802 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.38 71.98 0.53 -1.29 16 2 C -0.08 -1.34 0.85 -52.18 -0.04 -1.39 16 3 C -0.13 -1.82 8.47 71.98 0.61 -1.21 16 4 C -0.15 -3.20 6.86 71.98 0.49 -2.70 16 5 C 0.13 2.52 4.58 86.38 0.40 2.91 16 6 N -0.57 -13.44 1.92 -823.40 -1.58 -15.02 16 7 C 0.09 1.74 4.54 86.38 0.39 2.13 16 8 C 0.06 1.01 7.31 71.98 0.53 1.54 16 9 O -0.58 -9.46 13.01 -148.98 -1.94 -11.39 16 10 C 0.52 16.76 4.49 87.27 0.39 17.15 16 11 O -0.54 -20.83 15.32 -3.25 -0.05 -20.88 16 12 C 0.51 18.00 5.70 87.27 0.50 18.50 16 13 O -0.55 -21.51 14.83 -3.26 -0.05 -21.56 16 14 N -0.58 -20.47 2.97 -820.49 -2.44 -22.91 16 15 C 0.12 4.54 6.42 86.36 0.55 5.09 16 16 C -0.11 -5.36 5.16 30.68 0.16 -5.21 16 17 C 0.05 2.28 2.06 -11.50 -0.02 2.26 16 18 C -0.53 -28.88 8.56 25.60 0.22 -28.66 16 19 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 20 C 0.02 0.96 5.30 84.65 0.45 1.41 16 21 N -0.91 -50.62 11.30 21.45 0.24 -50.38 16 22 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C -0.12 -4.62 5.30 30.67 0.16 -4.46 16 27 C 0.10 3.24 6.08 86.36 0.53 3.77 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.76 5.51 -2.39 -0.01 0.75 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 1.13 4.43 -2.39 -0.01 1.12 16 35 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 36 H 0.04 1.06 7.41 -2.38 -0.02 1.04 16 37 H 0.10 1.77 7.56 -2.39 -0.02 1.75 16 38 H 0.07 1.66 7.20 -2.39 -0.02 1.64 16 39 H 0.13 1.69 5.53 -2.39 -0.01 1.68 16 40 H 0.09 1.68 7.03 -2.38 -0.02 1.67 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.04 0.90 6.41 -2.39 -0.02 0.88 16 43 H 0.40 3.48 9.12 -74.05 -0.68 2.81 16 44 H 0.08 3.00 7.02 -2.38 -0.02 2.98 16 45 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 46 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 4.27 6.03 -2.38 -0.01 4.26 16 48 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 50 H 0.07 2.79 8.14 -2.39 -0.02 2.78 16 51 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 53 H 0.09 2.86 3.06 -2.39 -0.01 2.85 16 Total: -1.00 -68.08 397.47 2.29 -65.79 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.24 Total: 21.24 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.84 Total: 9.83 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -3.78 Total: -88.31 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -2.04 Total: -53.84 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -68.08 2.29 -65.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325214434.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.308 kcal (2) G-P(sol) polarization free energy of solvation -68.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds