Wall clock time and date at job start Sat Apr 11 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47270 * 2 1 4 4 C 1.52998 * 109.47192 * 239.99772 * 2 1 3 5 5 C 1.53003 * 109.46993 * 119.99948 * 2 1 3 6 6 C 1.52994 * 109.47371 * 60.00024 * 5 2 1 7 7 C 1.52999 * 109.47124 * 180.02562 * 6 5 2 8 8 C 1.53008 * 109.47007 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47076 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00160 * 179.97438 * 9 8 7 11 11 O 1.21346 * 119.99798 * 359.97438 * 10 9 8 12 12 C 1.49448 * 120.00247 * 180.02562 * 10 9 8 13 13 O 1.21355 * 120.00006 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00247 * 179.97438 * 12 10 9 15 15 C 1.47290 * 125.79121 * 359.97438 * 14 12 10 16 16 C 1.54325 * 107.30599 * 178.92556 * 15 14 12 17 17 C 1.55154 * 102.94303 * 337.81911 * 16 15 14 18 18 O 1.42902 * 111.00280 * 277.42723 * 17 16 15 19 19 C 1.50693 * 111.03939 * 153.59058 * 17 16 15 20 20 H 1.08004 * 120.00401 * 6.33015 * 19 17 16 21 21 C 1.37876 * 120.00383 * 186.33190 * 19 17 16 22 22 N 1.31512 * 119.99646 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00223 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47177 * 59.99714 * 23 21 19 25 25 H 1.48506 * 109.46953 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47102 * 299.99690 * 23 21 19 27 27 C 1.47425 * 125.65138 * 179.97438 * 14 12 10 28 28 H 1.09001 * 109.47157 * 300.00417 * 1 2 3 29 29 H 1.08999 * 109.47294 * 59.99782 * 1 2 3 30 30 H 1.08998 * 109.47369 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47168 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47121 * 299.99789 * 3 2 1 33 33 H 1.09001 * 109.47371 * 59.99714 * 3 2 1 34 34 H 1.08998 * 109.46778 * 300.00135 * 4 2 1 35 35 H 1.08995 * 109.47349 * 60.00056 * 4 2 1 36 36 H 1.08999 * 109.47423 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.46871 * 299.99810 * 5 2 1 38 38 H 1.09007 * 109.47046 * 180.02562 * 5 2 1 39 39 H 1.08992 * 109.47510 * 59.99946 * 6 5 2 40 40 H 1.09007 * 109.47102 * 300.00047 * 6 5 2 41 41 H 1.08998 * 109.47839 * 59.99858 * 7 6 5 42 42 H 1.09001 * 109.46989 * 299.99090 * 7 6 5 43 43 H 1.08998 * 109.46939 * 59.99304 * 8 7 6 44 44 H 1.09001 * 109.46501 * 299.99387 * 8 7 6 45 45 H 0.97005 * 120.00064 * 359.97438 * 9 8 7 46 46 H 1.09004 * 109.85762 * 59.50172 * 15 14 12 47 47 H 1.08995 * 110.00297 * 298.43119 * 15 14 12 48 48 H 1.09002 * 110.72180 * 219.45147 * 16 15 14 49 49 H 1.08997 * 110.72163 * 96.18354 * 16 15 14 50 50 H 0.96703 * 114.00194 * 173.65090 * 18 17 16 51 51 H 0.97010 * 119.99834 * 180.02562 * 22 21 19 52 52 H 1.09002 * 110.36696 * 85.25946 * 27 14 12 53 53 H 1.08995 * 110.36608 * 323.04783 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.5299 -2.1637 1.2493 7 6 2.0394 -2.8847 2.4989 8 6 1.5299 -4.3275 2.4986 9 7 2.0182 -5.0180 3.6948 10 6 1.6927 -6.3083 3.9082 11 8 0.9947 -6.8979 3.1096 12 6 2.1903 -7.0126 5.1287 13 8 2.8880 -6.4228 5.9275 14 7 1.8644 -8.3028 5.3423 15 6 1.0293 -9.1374 4.4617 16 6 0.9545 -10.5422 5.0963 17 6 2.2127 -10.5813 6.0032 18 8 3.3770 -10.9252 5.2494 19 6 2.0191 -11.5319 7.1563 20 1 1.1346 -12.1500 7.2041 21 6 2.9709 -11.6128 8.1505 22 7 4.0481 -10.8606 8.0922 23 14 2.7312 -12.7918 9.5795 24 1 2.6321 -14.1808 9.0639 25 1 3.8880 -12.6893 10.5052 26 1 1.4835 -12.4429 10.3052 27 6 2.2849 -9.1153 6.4984 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 -1.7489 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1299 -0.7209 -1.2495 37 1 1.6766 -0.2074 2.1392 38 1 3.1300 -0.7209 1.2495 39 1 1.8932 -2.6776 0.3595 40 1 0.4399 -2.1637 1.2493 41 1 1.6758 -2.3708 3.3887 42 1 3.1294 -2.8848 2.4993 43 1 1.8939 -4.8411 1.6088 44 1 0.4399 -4.3277 2.4980 45 1 2.5759 -4.5466 4.3333 46 1 1.4829 -9.2011 3.4726 47 1 0.0288 -8.7121 4.3838 48 1 1.0075 -11.3151 4.3295 49 1 0.0471 -10.6490 5.6907 50 1 4.2016 -10.8679 5.7512 51 1 4.7181 -10.9178 8.7915 52 1 1.6042 -8.9639 7.3362 53 1 3.3047 -8.8627 6.7886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326084251.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:57 Heat of formation + Delta-G solvation = -167.719605 kcal Electronic energy + Delta-G solvation = -29783.642485 eV Core-core repulsion = 25653.407358 eV Total energy + Delta-G solvation = -4130.235126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.79822 -40.07558 -39.12482 -38.86538 -36.88797 -35.98098 -34.24415 -33.80927 -31.95835 -29.79519 -29.46394 -28.10978 -28.09794 -27.61119 -25.77748 -24.39201 -22.94331 -22.38902 -21.54623 -20.76920 -19.43883 -19.14747 -18.70597 -17.97778 -17.39410 -17.07469 -16.74786 -16.67846 -16.28244 -15.80869 -15.73174 -15.48624 -15.18738 -14.91641 -14.78277 -14.67564 -14.65518 -14.08895 -13.95970 -13.52257 -13.48486 -13.33174 -13.16222 -12.89262 -12.81821 -12.76396 -12.54238 -12.52409 -12.51120 -12.36033 -12.32874 -12.29897 -12.26348 -12.10780 -11.63776 -11.28055 -11.23022 -11.20522 -11.19194 -10.74506 -10.57249 -10.35755 -10.30026 -9.65431 -8.25076 -6.42175 0.33452 1.28058 1.45561 1.46652 1.54199 2.11445 2.37786 2.52152 3.00875 3.31531 3.69845 3.76966 3.93273 3.94208 4.05275 4.08167 4.10309 4.14438 4.31755 4.34632 4.47099 4.61799 4.65539 4.68153 4.73004 4.80986 4.81634 4.84551 4.94023 4.96879 4.97209 4.97889 5.04996 5.05455 5.13092 5.14068 5.15141 5.21961 5.28557 5.31995 5.33019 5.39849 5.43181 5.48293 5.61429 5.62665 5.74151 5.98318 6.07197 6.36638 6.61671 6.67747 6.91939 7.26375 7.34667 8.80421 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.033286 B = 0.001694 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.000969 B =16529.772397 C =16875.768474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.105 4.105 6 C -0.116 4.116 7 C -0.124 4.124 8 C 0.117 3.883 9 N -0.690 5.690 10 C 0.515 3.485 11 O -0.531 6.531 12 C 0.501 3.499 13 O -0.562 6.562 14 N -0.584 5.584 15 C 0.120 3.880 16 C -0.115 4.115 17 C 0.232 3.768 18 O -0.587 6.587 19 C -0.557 4.557 20 H 0.070 0.930 21 C 0.029 3.971 22 N -0.915 5.915 23 Si 0.965 3.035 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.269 1.269 27 C 0.107 3.893 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.418 0.582 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.374 0.626 51 H 0.270 0.730 52 H 0.056 0.944 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.805 21.282 -14.807 26.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.143 4.143 6 C -0.153 4.153 7 C -0.162 4.162 8 C -0.005 4.005 9 N -0.343 5.343 10 C 0.295 3.705 11 O -0.408 6.408 12 C 0.284 3.716 13 O -0.442 6.442 14 N -0.316 5.316 15 C -0.002 4.002 16 C -0.153 4.153 17 C 0.192 3.808 18 O -0.395 6.395 19 C -0.595 4.595 20 H 0.088 0.912 21 C -0.173 4.173 22 N -0.553 5.553 23 Si 0.791 3.209 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.194 1.194 27 C -0.016 4.016 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.255 0.745 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.223 0.777 51 H 0.080 0.920 52 H 0.074 0.926 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.221 21.218 -15.388 26.939 hybrid contribution 0.961 -0.355 1.752 2.029 sum -5.260 20.863 -13.636 25.473 Atomic orbital electron populations 1.21938 0.94560 1.02015 1.01637 1.20562 0.95767 0.95464 0.95373 1.21872 1.00938 0.95320 1.01765 1.21941 1.00899 1.00479 0.96867 1.21603 1.00598 0.94711 0.97386 1.21598 1.01443 0.95440 0.96862 1.21785 1.01886 0.92219 1.00286 1.21683 0.99776 0.93159 0.85914 1.45797 1.52049 1.10064 1.26412 1.19785 0.81357 0.83638 0.85716 1.90717 1.37455 1.66278 1.46387 1.20273 0.81927 0.81967 0.87397 1.90699 1.39439 1.65951 1.48150 1.48778 1.48346 1.09648 1.24821 1.22198 0.94711 0.90315 0.92996 1.22724 0.97852 0.95333 0.99381 1.19871 0.83559 0.88431 0.88931 1.86125 1.18351 1.91706 1.43322 1.21735 1.07201 1.23762 1.06840 0.91159 1.25811 0.94496 0.96591 1.00360 1.69817 1.10095 1.39838 1.35590 0.85492 0.77730 0.79235 0.78477 1.19630 1.21073 1.19411 1.23046 0.99294 0.92700 0.86511 0.92731 0.92803 0.92248 0.92727 0.92621 0.92658 0.92269 0.92795 0.92810 0.91806 0.91918 0.91189 0.91044 0.90450 0.90661 0.91229 0.90917 0.74524 0.91277 0.89680 0.89612 0.88867 0.77719 0.92021 0.92586 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.12 71.98 0.58 -0.83 16 2 C -0.07 -0.71 0.80 -52.18 -0.04 -0.75 16 3 C -0.14 -1.34 8.47 71.98 0.61 -0.73 16 4 C -0.14 -1.45 8.12 71.98 0.58 -0.87 16 5 C -0.11 -1.05 4.27 30.59 0.13 -0.92 16 6 C -0.12 -1.22 4.51 30.59 0.14 -1.08 16 7 C -0.12 -1.53 5.33 30.60 0.16 -1.37 16 8 C 0.12 2.12 5.67 86.38 0.49 2.61 16 9 N -0.69 -16.96 5.55 -464.42 -2.58 -19.54 16 10 C 0.52 17.08 7.86 87.27 0.69 17.76 16 11 O -0.53 -18.80 14.15 -3.23 -0.05 -18.84 16 12 C 0.50 20.30 7.92 87.27 0.69 20.99 16 13 O -0.56 -24.97 16.73 -3.26 -0.05 -25.03 16 14 N -0.58 -25.03 3.34 -812.69 -2.71 -27.74 16 15 C 0.12 4.54 5.50 86.68 0.48 5.02 16 16 C -0.12 -4.60 6.13 31.78 0.19 -4.40 16 17 C 0.23 11.33 0.87 -10.15 -0.01 11.32 16 18 O -0.59 -30.39 13.16 -148.98 -1.96 -32.35 16 19 C -0.56 -28.80 8.27 25.60 0.21 -28.58 16 20 H 0.07 3.51 7.79 -2.91 -0.02 3.48 16 21 C 0.03 1.48 5.29 84.65 0.45 1.93 16 22 N -0.91 -48.99 10.69 21.45 0.23 -48.76 16 23 Si 0.97 41.21 29.54 68.60 2.03 43.24 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 C 0.11 5.20 5.38 86.85 0.47 5.66 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.58 6.43 -2.39 -0.02 0.57 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.60 6.43 -2.39 -0.02 0.59 16 35 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 40 H 0.07 0.74 6.43 -2.38 -0.02 0.72 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.42 9.42 7.94 -92.70 -0.74 8.68 16 46 H 0.07 2.64 7.59 -2.38 -0.02 2.63 16 47 H 0.09 2.89 7.70 -2.39 -0.02 2.87 16 48 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 49 H 0.09 3.41 8.03 -2.39 -0.02 3.40 16 50 H 0.37 20.00 7.56 -74.06 -0.56 19.44 16 51 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 52 H 0.06 2.80 8.03 -2.39 -0.02 2.78 16 53 H 0.06 3.20 7.32 -2.39 -0.02 3.18 16 Total: -1.00 -61.51 416.96 0.34 -61.17 By element: Atomic # 1 Polarization: 42.48 SS G_CDS: -0.39 Total: 42.09 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 5.83 Total: 25.77 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -5.06 Total: -96.04 kcal Atomic # 8 Polarization: -74.16 SS G_CDS: -2.06 Total: -76.22 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -61.51 0.34 -61.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326084251.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.552 kcal (2) G-P(sol) polarization free energy of solvation -61.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds