Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47308 * 2 1 4 4 C 1.52998 * 109.47515 * 59.99654 * 3 2 1 5 5 C 1.52993 * 109.47192 * 60.00194 * 4 3 2 6 6 C 1.53001 * 109.46786 * 299.99104 * 3 2 1 7 7 C 1.52998 * 109.47543 * 300.00533 * 6 3 2 8 8 C 1.53008 * 109.47007 * 179.97438 * 3 2 1 9 9 N 1.46497 * 109.47076 * 179.97438 * 8 3 2 10 10 C 1.34774 * 120.00160 * 179.97438 * 9 8 3 11 11 O 1.21348 * 119.99666 * 0.02562 * 10 9 8 12 12 C 1.49448 * 120.00247 * 180.02562 * 10 9 8 13 13 O 1.21355 * 120.00006 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00247 * 179.97438 * 12 10 9 15 15 C 1.47290 * 125.79121 * 359.97438 * 14 12 10 16 16 C 1.54325 * 107.30599 * 178.92556 * 15 14 12 17 17 C 1.55154 * 102.94303 * 337.81911 * 16 15 14 18 18 O 1.42902 * 111.00280 * 277.42723 * 17 16 15 19 19 C 1.50693 * 111.03939 * 153.59058 * 17 16 15 20 20 H 1.08004 * 120.00401 * 6.33015 * 19 17 16 21 21 C 1.37876 * 120.00383 * 186.33190 * 19 17 16 22 22 N 1.31512 * 119.99646 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00223 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47219 * 90.00069 * 23 21 19 25 25 H 1.48500 * 109.47001 * 209.99842 * 23 21 19 26 26 H 1.48498 * 109.46999 * 329.99572 * 23 21 19 27 27 C 1.47425 * 125.65138 * 179.97438 * 14 12 10 28 28 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46867 * 300.00835 * 1 2 3 30 30 H 1.09008 * 109.46436 * 60.00247 * 1 2 3 31 31 H 1.09001 * 109.47286 * 239.99470 * 2 1 3 32 32 H 1.09007 * 109.46930 * 119.99584 * 2 1 3 33 33 H 1.08999 * 109.46636 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.46778 * 300.00060 * 4 3 2 35 35 H 1.09008 * 109.47191 * 300.00142 * 5 4 3 36 36 H 1.09003 * 109.47689 * 59.99905 * 5 4 3 37 37 H 1.09001 * 109.47157 * 180.02562 * 5 4 3 38 38 H 1.09011 * 109.46704 * 60.00849 * 6 3 2 39 39 H 1.09001 * 109.47297 * 179.97438 * 6 3 2 40 40 H 1.08998 * 109.46778 * 299.99854 * 7 6 3 41 41 H 1.09002 * 109.47073 * 60.00007 * 7 6 3 42 42 H 1.08999 * 109.47423 * 179.97438 * 7 6 3 43 43 H 1.08998 * 109.46939 * 59.99304 * 8 3 2 44 44 H 1.09001 * 109.46501 * 299.99387 * 8 3 2 45 45 H 0.97005 * 120.00064 * 359.97438 * 9 8 3 46 46 H 1.09004 * 109.85762 * 59.50172 * 15 14 12 47 47 H 1.08995 * 110.00297 * 298.43119 * 15 14 12 48 48 H 1.09002 * 110.72180 * 219.45147 * 16 15 14 49 49 H 1.08997 * 110.72163 * 96.18354 * 16 15 14 50 50 H 0.96703 * 114.00194 * 173.65090 * 18 17 16 51 51 H 0.97010 * 119.99834 * 180.02562 * 22 21 19 52 52 H 1.09002 * 110.36696 * 85.25946 * 27 14 12 53 53 H 1.08995 * 110.36608 * 323.04783 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1638 1.2491 5 6 2.0400 1.4427 2.4984 6 6 1.5302 2.1636 -1.2494 7 6 2.0402 1.4422 -2.4985 8 6 3.5701 1.4424 0.0006 9 7 4.0585 2.8236 0.0000 10 6 5.3836 3.0698 0.0010 11 8 6.1721 2.1474 0.0018 12 6 5.8818 4.4788 0.0009 13 8 5.0933 5.4012 -0.0004 14 7 7.2069 4.7250 0.0024 15 6 8.2721 3.7078 0.0046 16 6 9.6215 4.4561 -0.0220 17 6 9.2396 5.8408 -0.6085 18 8 9.1769 5.7930 -2.0353 19 6 10.2001 6.9068 -0.1483 20 1 11.0771 6.6346 0.4202 21 6 9.9594 8.2298 -0.4530 22 7 8.8917 8.5612 -1.1457 23 14 11.1504 9.5512 0.1169 24 1 12.1920 9.7597 -0.9209 25 1 10.4123 10.8204 0.3392 26 1 11.7938 9.1240 1.3853 27 6 7.8328 6.0598 0.0020 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8931 3.1916 1.2488 34 1 0.4401 2.1639 1.2491 35 1 1.6766 0.4150 2.4985 36 1 3.1300 1.4426 2.4985 37 1 1.6763 1.9564 3.3883 38 1 0.4401 2.1637 -1.2494 39 1 1.8932 3.1914 -1.2492 40 1 3.1302 1.4422 -2.4984 41 1 1.6768 0.4146 -2.4985 42 1 1.6766 1.9557 -3.3886 43 1 3.9338 0.9283 -0.8890 44 1 3.9330 0.9287 0.8910 45 1 3.4282 3.5609 -0.0011 46 1 8.1816 3.0750 -0.8783 47 1 8.2038 3.0984 0.9058 48 1 10.3330 3.9453 -0.6708 49 1 10.0238 4.5617 0.9855 50 1 8.8483 6.6065 -2.4421 51 1 8.7226 9.4920 -1.3604 52 1 7.9161 6.4400 1.0201 53 1 7.2553 6.7494 -0.6136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326907423.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -154.563455 kcal Electronic energy + Delta-G solvation = -31546.152784 eV Core-core repulsion = 27416.488151 eV Total energy + Delta-G solvation = -4129.664633 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.91682 -40.64328 -39.49393 -38.84301 -36.25892 -35.12291 -34.24845 -33.18341 -31.95997 -31.61996 -29.75901 -29.21521 -27.59564 -26.48950 -25.47359 -24.18586 -22.85311 -22.83149 -21.56421 -21.04450 -19.33029 -19.07118 -18.54125 -17.96831 -17.39944 -17.09638 -16.77240 -16.64523 -16.40566 -16.15280 -16.08226 -15.44845 -15.28996 -14.86957 -14.68083 -14.56983 -14.04374 -13.96688 -13.84965 -13.63247 -13.58360 -13.52799 -13.34431 -13.14137 -12.84965 -12.79642 -12.72182 -12.54190 -12.43019 -12.36943 -12.31829 -12.23026 -12.17651 -12.11445 -11.54716 -11.33111 -11.22251 -11.09487 -11.05839 -10.75586 -10.57548 -10.34483 -10.24751 -9.65330 -8.25648 -6.42477 0.34378 1.28537 1.43849 1.45693 1.54981 2.12229 2.37228 2.52586 3.00288 3.32292 3.56854 3.76506 3.77147 3.77596 4.04797 4.14049 4.19487 4.23098 4.31258 4.48241 4.51391 4.56057 4.60725 4.62256 4.64621 4.67180 4.72615 4.74284 4.88023 4.96559 4.98862 5.01126 5.04906 5.09427 5.13696 5.15106 5.18853 5.22107 5.31968 5.32548 5.37612 5.40566 5.42250 5.42832 5.44887 5.70680 5.73831 5.98462 6.06844 6.36210 6.61208 6.67539 6.92483 7.25876 7.34203 8.79997 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.002399 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.468329 B =11667.077816 C =11741.079464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.060 4.060 4 C -0.118 4.118 5 C -0.155 4.155 6 C -0.118 4.118 7 C -0.156 4.156 8 C 0.122 3.878 9 N -0.683 5.683 10 C 0.515 3.485 11 O -0.531 6.531 12 C 0.500 3.500 13 O -0.562 6.562 14 N -0.583 5.583 15 C 0.120 3.880 16 C -0.115 4.115 17 C 0.233 3.767 18 O -0.587 6.587 19 C -0.554 4.554 20 H 0.070 0.930 21 C 0.027 3.973 22 N -0.915 5.915 23 Si 0.965 3.035 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.265 1.265 27 C 0.105 3.895 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.414 0.586 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.374 0.626 51 H 0.270 0.730 52 H 0.056 0.944 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.811 -16.574 3.494 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.060 4.060 4 C -0.155 4.155 5 C -0.213 4.213 6 C -0.155 4.155 7 C -0.213 4.213 8 C 0.000 4.000 9 N -0.336 5.336 10 C 0.295 3.705 11 O -0.409 6.409 12 C 0.284 3.716 13 O -0.443 6.443 14 N -0.315 5.315 15 C -0.002 4.002 16 C -0.153 4.153 17 C 0.193 3.807 18 O -0.395 6.395 19 C -0.592 4.592 20 H 0.088 0.912 21 C -0.174 4.174 22 N -0.553 5.553 23 Si 0.791 3.209 24 H -0.202 1.202 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.017 4.017 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.252 0.748 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.223 0.777 51 H 0.079 0.921 52 H 0.074 0.926 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.607 -17.258 3.532 24.209 hybrid contribution 0.214 2.180 -0.034 2.191 sum -16.393 -15.077 3.498 22.545 Atomic orbital electron populations 1.21847 0.94569 1.02096 1.02401 1.21561 0.96997 0.93519 1.02820 1.20831 0.91479 0.97845 0.95844 1.21647 1.01878 0.98496 0.93496 1.21872 1.00606 1.01408 0.97369 1.21653 1.01893 0.98470 0.93527 1.21874 1.00532 1.01448 0.97459 1.21811 0.94919 0.80593 1.02657 1.45774 1.05178 1.11001 1.71697 1.19763 0.84245 0.88195 0.78303 1.90714 1.55647 1.45486 1.49006 1.20289 0.82074 0.90277 0.78974 1.90696 1.54947 1.46844 1.51778 1.48757 1.04779 1.10588 1.67350 1.22190 0.85768 0.89723 1.02506 1.22725 0.95802 0.94855 1.01924 1.19865 0.89335 0.92904 0.78602 1.86125 1.89129 1.42395 1.21868 1.21747 1.09453 0.91826 1.36224 0.91178 1.25821 0.96616 1.00853 0.94093 1.69825 1.27189 1.19315 1.39020 0.85440 0.78680 0.77915 0.78908 1.20161 1.21043 1.18961 1.23056 0.96374 0.81914 1.00319 0.92187 0.92086 0.92177 0.91185 0.91041 0.93123 0.89720 0.91037 0.93909 0.92650 0.89670 0.93193 0.94065 0.90973 0.92756 0.91032 0.90718 0.74800 0.91316 0.89736 0.89613 0.88886 0.77726 0.92055 0.92594 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.21 71.98 0.66 -0.65 16 2 C -0.11 -1.19 4.28 30.59 0.13 -1.06 16 3 C -0.06 -0.83 0.11 -52.18 -0.01 -0.83 16 4 C -0.12 -1.63 4.46 30.59 0.14 -1.49 16 5 C -0.16 -2.17 9.21 71.98 0.66 -1.51 16 6 C -0.12 -1.70 4.46 30.59 0.14 -1.56 16 7 C -0.16 -2.36 9.21 71.98 0.66 -1.70 16 8 C 0.12 2.40 3.86 86.38 0.33 2.74 16 9 N -0.68 -17.50 4.95 -464.41 -2.30 -19.80 16 10 C 0.51 17.35 7.86 87.27 0.69 18.04 16 11 O -0.53 -18.99 14.15 -3.24 -0.05 -19.03 16 12 C 0.50 20.52 7.92 87.27 0.69 21.21 16 13 O -0.56 -25.27 16.73 -3.26 -0.05 -25.32 16 14 N -0.58 -25.15 3.34 -812.69 -2.71 -27.86 16 15 C 0.12 4.59 5.50 86.68 0.48 5.07 16 16 C -0.12 -4.63 6.13 31.78 0.19 -4.44 16 17 C 0.23 11.41 0.87 -10.15 -0.01 11.40 16 18 O -0.59 -30.52 13.16 -148.98 -1.96 -32.48 16 19 C -0.55 -28.70 8.27 25.60 0.21 -28.49 16 20 H 0.07 3.51 7.79 -2.91 -0.02 3.49 16 21 C 0.03 1.41 5.29 84.65 0.45 1.86 16 22 N -0.91 -49.16 10.69 21.45 0.23 -48.93 16 23 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 24 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 C 0.11 5.17 5.38 86.85 0.47 5.64 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.51 6.43 -2.39 -0.02 0.49 16 30 H 0.06 0.51 6.43 -2.38 -0.02 0.50 16 31 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 32 H 0.07 0.74 6.43 -2.38 -0.02 0.72 16 33 H 0.05 0.84 6.86 -2.39 -0.02 0.83 16 34 H 0.08 0.94 6.43 -2.39 -0.02 0.93 16 35 H 0.07 0.80 6.43 -2.38 -0.02 0.79 16 36 H 0.04 0.73 6.43 -2.39 -0.02 0.72 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.99 6.43 -2.38 -0.02 0.97 16 39 H 0.05 0.87 6.86 -2.39 -0.02 0.85 16 40 H 0.04 0.77 6.43 -2.39 -0.02 0.75 16 41 H 0.07 0.88 6.43 -2.39 -0.02 0.86 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 1.49 6.43 -2.39 -0.02 1.47 16 44 H 0.07 1.50 6.43 -2.39 -0.02 1.49 16 45 H 0.41 10.24 5.64 -92.70 -0.52 9.72 16 46 H 0.07 2.65 7.59 -2.38 -0.02 2.64 16 47 H 0.08 2.90 7.71 -2.39 -0.02 2.89 16 48 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.09 3.43 8.03 -2.39 -0.02 3.41 16 50 H 0.37 20.09 7.56 -74.06 -0.56 19.53 16 51 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 52 H 0.06 2.81 8.03 -2.39 -0.02 2.79 16 53 H 0.06 3.23 7.32 -2.39 -0.02 3.21 16 Total: -1.00 -61.24 397.30 0.93 -60.32 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -0.14 Total: 45.46 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 5.89 Total: 24.23 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -4.78 Total: -96.59 kcal Atomic # 8 Polarization: -74.77 SS G_CDS: -2.06 Total: -76.84 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -61.24 0.93 -60.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326907423.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.248 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds