Wall clock time and date at job start Sat Apr 11 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46910 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00478 * 2 1 3 5 5 O 1.42896 * 109.47570 * 59.99871 * 4 2 1 6 6 C 1.52993 * 109.47172 * 120.00345 * 2 1 3 7 7 C 1.52998 * 109.46919 * 299.99910 * 6 2 1 8 8 C 1.53006 * 109.46913 * 180.02562 * 7 6 2 9 9 N 1.46501 * 109.47082 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00243 * 180.02562 * 9 8 7 11 11 O 1.21357 * 119.99737 * 359.97438 * 10 9 8 12 12 C 1.49450 * 120.00173 * 179.97438 * 10 9 8 13 13 O 1.21345 * 120.00237 * 353.32917 * 12 10 9 14 14 N 1.34779 * 119.99959 * 173.33642 * 12 10 9 15 15 C 1.46926 * 120.62965 * 173.06654 * 14 12 10 16 16 C 1.53192 * 108.89029 * 233.55576 * 15 14 12 17 17 C 1.53071 * 109.29669 * 305.57921 * 16 15 14 18 18 C 1.50702 * 109.44365 * 181.24072 * 17 16 15 19 19 H 1.08007 * 119.99829 * 239.79782 * 18 17 16 20 20 C 1.37879 * 120.00166 * 59.78883 * 18 17 16 21 21 N 1.31515 * 119.99785 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99970 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46998 * 359.97438 * 22 20 18 24 24 H 1.48489 * 109.46978 * 120.00571 * 22 20 18 25 25 H 1.48503 * 109.46712 * 240.00375 * 22 20 18 26 26 C 1.53039 * 109.66157 * 61.15585 * 17 16 15 27 27 C 1.46927 * 120.62872 * 353.08530 * 14 12 10 28 28 H 1.08996 * 109.46920 * 299.99511 * 1 2 3 29 29 H 1.08997 * 109.47068 * 59.99911 * 1 2 3 30 30 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46910 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47078 * 300.00396 * 3 2 1 33 33 H 1.09001 * 109.46526 * 60.00313 * 3 2 1 34 34 H 1.09005 * 109.46463 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47095 * 299.99490 * 4 2 1 36 36 H 0.96704 * 114.00141 * 179.97438 * 5 4 2 37 37 H 1.09005 * 109.47063 * 180.02562 * 6 2 1 38 38 H 1.08998 * 109.47418 * 60.00050 * 6 2 1 39 39 H 1.09001 * 109.47337 * 60.00375 * 7 6 2 40 40 H 1.09003 * 109.47515 * 299.99965 * 7 6 2 41 41 H 1.08993 * 109.47263 * 59.99970 * 8 7 6 42 42 H 1.09003 * 109.47332 * 299.99584 * 8 7 6 43 43 H 0.96998 * 119.99852 * 359.97438 * 9 8 7 44 44 H 1.08995 * 109.58498 * 353.41300 * 15 14 12 45 45 H 1.09003 * 109.58798 * 113.70109 * 15 14 12 46 46 H 1.08998 * 109.49941 * 65.39130 * 16 15 14 47 47 H 1.09008 * 109.49729 * 185.48788 * 16 15 14 48 48 H 1.09009 * 109.34867 * 301.12720 * 17 16 15 49 49 H 0.97002 * 119.99706 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.49875 * 178.74934 * 26 17 16 51 51 H 1.09001 * 109.52161 * 58.66408 * 26 17 16 52 52 H 1.08997 * 109.58946 * 246.15605 * 27 14 12 53 53 H 1.08998 * 109.59100 * 6.44429 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 1.5636 -0.0475 -2.4161 6 6 2.0400 -0.7213 1.2491 7 6 1.5300 -0.0001 2.4984 8 6 2.0406 -0.7211 3.7476 9 7 1.5518 -0.0309 4.9438 10 6 1.8781 -0.4908 6.1679 11 8 2.5765 -1.4770 6.2792 12 6 1.3799 0.2136 7.3882 13 8 0.7845 1.2656 7.2810 14 7 1.5920 -0.3194 8.6078 15 6 1.2448 0.4300 9.8230 16 6 2.4741 0.4934 10.7348 17 6 2.9862 -0.9258 10.9928 18 6 4.1774 -0.8695 11.9143 19 1 5.1313 -1.2571 11.5881 20 6 4.0495 -0.3232 13.1738 21 7 2.8879 0.1484 13.5711 22 14 5.5262 -0.2528 14.3157 23 1 6.7062 -0.8448 13.6358 24 1 5.8138 1.1612 14.6662 25 1 5.2320 -1.0195 15.5530 26 6 3.3963 -1.5739 9.6685 27 6 2.1752 -1.6607 8.7474 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1300 -0.7207 -1.2495 35 1 1.6766 -1.7488 -1.2494 36 1 1.8492 -0.4508 -3.2473 37 1 3.1301 -0.7209 1.2493 38 1 1.6767 -1.7489 1.2491 39 1 0.4400 -0.0001 2.4984 40 1 1.8933 1.0276 2.4985 41 1 3.1305 -0.7207 3.7474 42 1 1.6776 -1.7489 3.7479 43 1 0.9938 0.7576 4.8549 44 1 0.9370 1.4404 9.5537 45 1 0.4299 -0.0739 10.3427 46 1 3.2564 1.0780 10.2508 47 1 2.2017 0.9618 11.6807 48 1 2.1959 -1.5162 11.4567 49 1 2.7978 0.5324 14.4573 50 1 3.7812 -2.5760 9.8577 51 1 4.1694 -0.9711 9.1920 52 1 1.4380 -2.3364 9.1808 53 1 2.4791 -2.0308 7.7683 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327461786.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:22 Heat of formation + Delta-G solvation = -152.305767 kcal Electronic energy + Delta-G solvation = -29919.698643 eV Core-core repulsion = 25790.131910 eV Total energy + Delta-G solvation = -4129.566732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00528 -39.99798 -39.47083 -38.60396 -37.10453 -35.92040 -35.20760 -32.94153 -32.15954 -31.86071 -28.47225 -28.13460 -27.63695 -27.10790 -25.46100 -24.28749 -23.45584 -22.65656 -21.67017 -20.44215 -19.52996 -18.69373 -18.50723 -18.27460 -17.91408 -17.19116 -16.80021 -16.50974 -16.34575 -16.14962 -15.89858 -15.57498 -15.44141 -15.05917 -14.88127 -14.59557 -14.54177 -14.47938 -14.06072 -13.81559 -13.61626 -13.49561 -13.17084 -13.09073 -12.94057 -12.84226 -12.56738 -12.55735 -12.49105 -12.35345 -12.12296 -11.94208 -11.92422 -11.56675 -11.45623 -11.40334 -11.24518 -11.19465 -10.86571 -10.80437 -10.45470 -10.32624 -9.99838 -9.69007 -8.08481 -6.22351 0.30272 1.30584 1.39866 1.42476 1.53189 2.09739 2.43421 2.49233 3.17702 3.23911 3.36594 3.82132 3.87528 4.05840 4.12161 4.13493 4.24323 4.30582 4.35522 4.43781 4.44744 4.59916 4.60373 4.60638 4.65867 4.70551 4.74147 4.82351 4.84148 4.91517 4.93196 4.95513 5.11444 5.11500 5.14786 5.19813 5.20468 5.27334 5.32561 5.36591 5.43479 5.47003 5.54119 5.58573 5.63159 5.96061 6.00699 6.09245 6.31450 6.37907 6.69583 6.88010 6.91907 6.95191 7.45645 8.95222 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.001722 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.632834 B =16256.881042 C =16584.615354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.139 4.139 4 C 0.083 3.917 5 O -0.590 6.590 6 C -0.101 4.101 7 C -0.127 4.127 8 C 0.115 3.885 9 N -0.684 5.684 10 C 0.515 3.485 11 O -0.522 6.522 12 C 0.497 3.503 13 O -0.555 6.555 14 N -0.570 5.570 15 C 0.115 3.885 16 C -0.111 4.111 17 C 0.042 3.958 18 C -0.533 4.533 19 H 0.050 0.950 20 C 0.014 3.986 21 N -0.915 5.915 22 Si 0.952 3.048 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.280 1.280 26 C -0.109 4.109 27 C 0.057 3.943 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.393 0.607 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.419 0.581 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.024 0.976 47 H 0.079 0.921 48 H 0.003 0.997 49 H 0.261 0.739 50 H 0.067 0.933 51 H 0.041 0.959 52 H 0.066 0.934 53 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 -2.244 -30.363 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.196 4.196 4 C 0.005 3.995 5 O -0.398 6.398 6 C -0.139 4.139 7 C -0.165 4.165 8 C -0.007 4.007 9 N -0.336 5.336 10 C 0.296 3.704 11 O -0.401 6.401 12 C 0.280 3.720 13 O -0.434 6.434 14 N -0.301 5.301 15 C -0.007 4.007 16 C -0.150 4.150 17 C 0.023 3.977 18 C -0.571 4.571 19 H 0.069 0.931 20 C -0.184 4.184 21 N -0.554 5.554 22 Si 0.778 3.222 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.206 1.206 26 C -0.147 4.147 27 C -0.064 4.064 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.243 0.757 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.257 0.743 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.098 0.902 48 H 0.021 0.979 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.060 0.940 52 H 0.084 0.916 53 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.437 -1.940 -29.759 30.150 hybrid contribution 0.748 0.229 0.844 1.150 sum -3.689 -1.711 -28.915 29.200 Atomic orbital electron populations 1.21832 0.94246 1.01823 1.01662 1.20576 0.96341 0.96003 0.93553 1.21837 1.00732 0.95414 1.01649 1.22256 0.97476 0.94768 0.84973 1.86429 1.77945 1.58245 1.17150 1.21441 1.01378 0.99465 0.91636 1.21867 1.02311 1.00318 0.91965 1.21698 0.99858 0.96867 0.82312 1.45816 1.51457 1.32023 1.04332 1.19949 0.81138 0.84181 0.85132 1.90329 1.38526 1.26546 1.84673 1.20335 0.80915 0.85627 0.85150 1.90690 1.42108 1.24012 1.86621 1.48214 1.58511 1.18440 1.04943 1.21792 0.98155 0.96553 0.84159 1.21787 0.94594 1.00200 0.98374 1.18674 0.94937 0.92229 0.91834 1.21598 0.96756 1.39251 0.99497 0.93141 1.25703 0.98280 0.95057 0.99409 1.69971 1.24694 1.41233 1.19534 0.85595 0.80093 0.77621 0.78870 1.19410 1.20776 1.20554 1.21777 0.96580 1.00534 0.95821 1.23299 0.95348 0.81420 1.06296 0.92043 0.93347 0.92532 0.92720 0.93314 0.92090 0.93053 0.92888 0.75747 0.90773 0.90498 0.89969 0.90299 0.90983 0.90448 0.74321 0.90114 0.91236 0.95706 0.90230 0.97860 0.92962 0.91476 0.94013 0.91602 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.98 71.98 0.57 -0.96 16 2 C -0.06 -0.64 0.63 -52.18 -0.03 -0.68 16 3 C -0.14 -1.61 7.98 71.98 0.57 -1.04 16 4 C 0.08 0.75 5.91 71.98 0.43 1.17 16 5 O -0.59 -6.42 12.31 -148.98 -1.83 -8.26 16 6 C -0.10 -0.83 4.27 30.59 0.13 -0.70 16 7 C -0.13 -1.21 4.62 30.60 0.14 -1.07 16 8 C 0.11 1.65 5.67 86.38 0.49 2.14 16 9 N -0.68 -13.59 5.55 -464.40 -2.58 -16.16 16 10 C 0.51 14.48 7.78 87.27 0.68 15.16 16 11 O -0.52 -16.21 13.10 -3.27 -0.04 -16.26 16 12 C 0.50 16.93 7.74 87.27 0.68 17.60 16 13 O -0.55 -20.23 15.94 -3.23 -0.05 -20.28 16 14 N -0.57 -21.20 2.97 -820.48 -2.44 -23.64 16 15 C 0.12 4.66 6.41 86.36 0.55 5.22 16 16 C -0.11 -5.33 5.16 30.68 0.16 -5.17 16 17 C 0.04 2.09 2.06 -11.50 -0.02 2.07 16 18 C -0.53 -29.48 8.56 25.60 0.22 -29.27 16 19 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 20 C 0.01 0.78 5.30 84.66 0.45 1.23 16 21 N -0.91 -52.19 11.30 21.45 0.24 -51.95 16 22 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 26 C -0.11 -4.58 5.30 30.67 0.16 -4.42 16 27 C 0.06 2.04 6.27 86.37 0.54 2.58 16 28 H 0.06 0.63 6.43 -2.39 -0.02 0.61 16 29 H 0.05 0.67 7.68 -2.39 -0.02 0.66 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.70 7.68 -2.39 -0.02 0.68 16 33 H 0.06 0.66 6.43 -2.39 -0.02 0.65 16 34 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.39 1.04 9.12 -74.05 -0.68 0.36 16 37 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 39 H 0.08 0.73 6.43 -2.39 -0.02 0.71 16 40 H 0.08 0.76 6.43 -2.39 -0.02 0.74 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.42 7.35 7.96 -92.71 -0.74 6.61 16 44 H 0.08 3.19 7.05 -2.39 -0.02 3.17 16 45 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.08 4.25 6.03 -2.38 -0.01 4.24 16 48 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 49 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 50 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 51 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 52 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 53 H 0.16 5.27 3.78 -78.70 -0.30 4.98 16 Total: -1.00 -67.01 408.75 0.26 -66.75 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.78 Total: 20.14 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.72 Total: 3.87 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -4.77 Total: -91.75 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.93 Total: -44.79 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -67.01 0.26 -66.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327461786.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.556 kcal (2) G-P(sol) polarization free energy of solvation -67.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds