Wall clock time and date at job start Sat Apr 11 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 C 1.53007 * 109.46868 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46897 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46630 * 304.99277 * 5 4 3 7 7 C 1.52995 * 109.46929 * 184.99990 * 5 4 3 8 8 O 1.42903 * 109.46925 * 304.99544 * 7 5 4 9 9 C 1.42907 * 113.99754 * 180.02562 * 8 7 5 10 10 N 1.46492 * 109.47330 * 64.99560 * 5 4 3 11 11 C 1.34780 * 120.00260 * 204.99766 * 10 5 4 12 12 O 1.21351 * 119.99577 * 0.02562 * 11 10 5 13 13 C 1.49449 * 120.00255 * 180.02562 * 11 10 5 14 14 O 1.21344 * 120.00219 * 6.74556 * 13 11 10 15 15 N 1.34773 * 119.99812 * 186.75221 * 13 11 10 16 16 C 1.46928 * 120.63420 * 8.42012 * 15 13 11 17 17 C 1.53617 * 108.54284 * 126.37261 * 16 15 13 18 18 C 1.53043 * 109.24135 * 54.85941 * 17 16 15 19 19 C 1.53034 * 109.53831 * 298.50729 * 18 17 16 20 20 H 1.08999 * 109.50046 * 301.41400 * 19 18 17 21 21 C 1.50700 * 109.52560 * 181.33321 * 19 18 17 22 22 H 1.07997 * 120.00071 * 0.14978 * 21 19 18 23 23 C 1.37877 * 119.99962 * 180.14967 * 21 19 18 24 24 N 1.31516 * 120.00159 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99791 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47434 * 59.99588 * 25 23 21 27 27 H 1.48503 * 109.47029 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46865 * 299.99640 * 25 23 21 29 29 C 1.46930 * 120.63025 * 188.70636 * 15 13 11 30 30 H 1.09001 * 109.46741 * 299.99402 * 1 2 3 31 31 H 1.08997 * 109.47281 * 59.99487 * 1 2 3 32 32 H 1.08997 * 109.46950 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46741 * 240.00598 * 2 1 3 34 34 H 1.08998 * 109.47802 * 120.00506 * 2 1 3 35 35 H 1.09001 * 109.46911 * 60.00702 * 3 2 1 36 36 H 1.08997 * 109.47549 * 300.00350 * 3 2 1 37 37 H 1.08998 * 109.47458 * 59.99836 * 4 3 2 38 38 H 1.09007 * 109.46744 * 299.99648 * 4 3 2 39 39 H 1.09005 * 109.47168 * 184.99853 * 7 5 4 40 40 H 1.08997 * 109.47764 * 64.99726 * 7 5 4 41 41 H 1.09002 * 109.46799 * 179.97438 * 9 8 7 42 42 H 1.09000 * 109.46712 * 299.99735 * 9 8 7 43 43 H 1.08993 * 109.46989 * 59.99886 * 9 8 7 44 44 H 0.97007 * 120.00437 * 25.00464 * 10 5 4 45 45 H 1.09003 * 109.58782 * 246.21080 * 16 15 13 46 46 H 1.08995 * 109.58207 * 6.62929 * 16 15 13 47 47 H 1.09000 * 109.63748 * 294.86710 * 17 16 15 48 48 H 1.09000 * 109.43393 * 174.72938 * 17 16 15 49 49 H 1.09003 * 109.45711 * 178.49315 * 18 17 16 50 50 H 1.08994 * 109.44873 * 58.52518 * 18 17 16 51 51 H 0.97004 * 119.99565 * 180.02562 * 24 23 21 52 52 H 1.08997 * 109.58481 * 353.37173 * 29 15 13 53 53 H 1.08998 * 109.58780 * 113.79299 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6451 3.4245 -0.8414 7 6 5.6047 2.8869 -0.1264 8 8 6.1696 2.0825 0.9109 9 6 7.5969 2.0173 0.8837 10 7 3.6929 3.5393 1.2522 11 6 3.5661 4.8803 1.3008 12 8 3.7722 5.5455 0.3071 13 6 3.1718 5.5478 2.5785 14 8 3.0849 4.8991 3.6003 15 7 2.9124 6.8702 2.5957 16 6 2.8324 7.6338 1.3430 17 6 1.4912 8.3823 1.3120 18 6 1.3598 9.2343 2.5765 19 6 1.3762 8.3272 3.8089 20 1 0.5581 7.6099 3.7436 21 6 1.2139 9.1634 5.0520 22 1 1.1069 10.2351 4.9718 23 6 1.2019 8.5603 6.2918 24 7 1.3317 7.2552 6.3895 25 14 1.0000 9.5969 7.8327 26 1 -0.2938 10.3234 7.7746 27 1 1.0193 8.7158 9.0280 28 1 2.1137 10.5753 7.9204 29 6 2.7105 7.5770 3.8680 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9285 0.8892 39 1 5.9755 3.9081 -0.0368 40 1 5.8895 2.4809 -1.0970 41 1 7.9475 1.3886 1.7023 42 1 7.9232 1.5933 -0.0660 43 1 8.0086 3.0204 0.9944 44 1 3.5279 3.0075 2.0466 45 1 3.6541 8.3486 1.2976 46 1 2.8915 6.9517 0.4950 47 1 0.6720 7.6645 1.2702 48 1 1.4558 9.0268 0.4337 49 1 0.4212 9.7877 2.5455 50 1 2.1929 9.9350 2.6302 51 1 1.3229 6.8310 7.2618 52 1 2.6892 6.8573 4.6863 53 1 3.5224 8.2872 4.0243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328016182.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:34 Heat of formation + Delta-G solvation = -128.275894 kcal Electronic energy + Delta-G solvation = -31260.519304 eV Core-core repulsion = 27131.994585 eV Total energy + Delta-G solvation = -4128.524719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.57329 -38.89835 -37.80238 -36.80683 -36.45052 -34.48343 -33.22029 -31.74159 -31.23953 -29.71997 -28.82815 -26.56883 -25.76702 -24.97429 -24.24433 -22.92003 -21.78430 -21.25728 -20.78316 -20.12055 -18.80075 -17.23517 -17.07209 -16.31755 -16.20461 -16.05773 -15.68207 -15.63193 -15.29934 -14.84586 -14.57095 -14.47785 -13.98326 -13.82470 -13.45168 -13.38585 -13.32541 -12.87601 -12.83039 -12.59586 -12.53554 -12.46835 -12.12786 -11.97902 -11.76414 -11.58750 -11.40543 -11.25627 -11.15422 -10.94681 -10.78200 -10.72327 -10.69132 -10.44768 -10.27519 -10.10497 -9.88399 -9.85178 -9.22192 -9.16739 -9.08783 -8.54105 -8.42267 -7.78328 -5.99241 -4.08083 1.84851 2.74401 3.32703 3.38338 3.39903 3.55941 3.69789 4.00417 4.33830 4.43441 4.66699 4.75031 4.78251 4.95730 5.01507 5.06159 5.11660 5.17095 5.19251 5.30482 5.35877 5.39183 5.47009 5.55806 5.61533 5.63115 5.67333 5.70186 5.73915 5.87165 5.90019 6.00387 6.08307 6.18351 6.20621 6.27793 6.39008 6.56818 6.63171 6.73682 6.86952 6.90947 7.00681 7.06925 7.21277 7.33768 7.61647 7.85297 7.97256 8.01927 8.20486 8.38008 8.62912 8.95673 9.57338 11.05874 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.002827 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.526097 B = 9901.101174 C =10351.969685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.122 4.122 5 C 0.148 3.852 6 H 0.104 0.896 7 C 0.047 3.953 8 O -0.384 6.384 9 C 0.032 3.968 10 N -0.691 5.691 11 C 0.511 3.489 12 O -0.524 6.524 13 C 0.493 3.507 14 O -0.519 6.519 15 N -0.570 5.570 16 C 0.071 3.929 17 C -0.133 4.133 18 C -0.113 4.113 19 C 0.042 3.958 20 H 0.030 0.970 21 C -0.521 4.521 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.881 5.881 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.108 3.892 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.415 0.585 45 H 0.059 0.941 46 H 0.127 0.873 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.050 0.950 50 H 0.049 0.951 51 H 0.264 0.736 52 H 0.124 0.876 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 -13.144 -16.328 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.162 4.162 4 C -0.160 4.160 5 C 0.043 3.957 6 H 0.122 0.878 7 C -0.031 4.031 8 O -0.303 6.303 9 C -0.064 4.064 10 N -0.344 5.344 11 C 0.294 3.706 12 O -0.402 6.402 13 C 0.274 3.726 14 O -0.396 6.396 15 N -0.302 5.302 16 C -0.051 4.051 17 C -0.171 4.171 18 C -0.150 4.150 19 C 0.023 3.977 20 H 0.048 0.952 21 C -0.559 4.559 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.518 5.518 25 Si 0.721 3.279 26 H -0.203 1.203 27 H -0.212 1.212 28 H -0.203 1.203 29 C -0.012 4.012 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.252 0.748 45 H 0.077 0.923 46 H 0.144 0.856 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.074 0.926 52 H 0.142 0.858 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.853 -13.254 -16.194 22.020 hybrid contribution 0.142 0.601 1.043 1.212 sum 6.995 -12.653 -15.151 20.942 Atomic orbital electron populations 1.21784 0.95893 1.01450 1.02065 1.21505 0.95915 0.96711 1.01873 1.21682 0.94764 0.97032 1.02753 1.21808 0.95829 0.94509 1.03837 1.21182 0.92221 0.94333 0.87930 0.87773 1.23026 0.94051 0.95271 0.90704 1.87889 1.19937 1.70343 1.52083 1.22726 0.81209 1.01010 1.01479 1.45834 1.67986 1.06429 1.14141 1.20778 0.77412 0.82943 0.89486 1.90450 1.49963 1.62701 1.37045 1.19825 0.80693 0.83761 0.88331 1.90778 1.51438 1.63256 1.34103 1.48428 1.65242 1.06465 1.10111 1.22780 0.97202 0.97012 0.88088 1.22030 0.97165 0.99100 0.98818 1.21655 1.00435 0.98124 0.94814 1.18945 0.93020 0.93749 0.92013 0.95223 1.21053 1.50905 0.93557 0.90433 0.92354 1.25060 0.94855 0.94957 0.99174 1.69877 1.48969 1.08394 1.24563 0.86641 0.78667 0.80111 0.82483 1.20286 1.21247 1.20261 1.22472 0.98611 0.96793 0.83276 0.92477 0.92835 0.92934 0.92248 0.91927 0.91395 0.91908 0.90433 0.90141 0.92486 0.92358 0.89619 0.94267 0.94129 0.74765 0.92299 0.85620 0.92425 0.92223 0.93094 0.93214 0.92590 0.85820 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.89 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -1.10 5.10 -26.73 -0.14 -1.23 16 4 C -0.12 -1.02 4.47 -26.73 -0.12 -1.14 16 5 C 0.15 1.53 2.37 -67.94 -0.16 1.37 16 6 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 7 C 0.05 0.48 5.74 37.15 0.21 0.69 16 8 O -0.38 -4.19 9.87 -35.23 -0.35 -4.54 16 9 C 0.03 0.27 11.01 101.05 1.11 1.38 16 10 N -0.69 -9.20 4.47 -54.24 -0.24 -9.44 16 11 C 0.51 8.44 7.71 -11.58 -0.09 8.35 16 12 O -0.52 -8.75 12.84 5.50 0.07 -8.68 16 13 C 0.49 10.10 7.73 -11.59 -0.09 10.01 16 14 O -0.52 -12.12 15.93 5.50 0.09 -12.03 16 15 N -0.57 -12.03 2.97 -173.01 -0.51 -12.55 16 16 C 0.07 1.28 6.01 -3.49 -0.02 1.26 16 17 C -0.13 -2.35 6.10 -26.39 -0.16 -2.51 16 18 C -0.11 -2.33 5.11 -26.69 -0.14 -2.46 16 19 C 0.04 1.05 2.25 -91.66 -0.21 0.84 16 20 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.52 -14.18 8.57 -34.44 -0.29 -14.48 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 23 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 24 N -0.88 -25.54 11.39 55.43 0.63 -24.91 16 25 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 C 0.11 2.65 5.41 -3.71 -0.02 2.63 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.74 7.73 -51.93 -0.40 0.33 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.42 5.61 8.09 -40.82 -0.33 5.28 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.13 2.17 4.30 -54.84 -0.24 1.93 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 52 H 0.12 3.48 5.12 -51.93 -0.27 3.21 16 53 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 418.36 15.07 6.30 6.30 Total: -1.00 -30.76 418.36 -8.63 -39.39 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -9.60 Total: 5.89 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 0.01 Total: 4.33 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.12 Total: -46.89 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.19 Total: -25.26 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -30.76 -8.63 -39.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328016182.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.890 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds