Wall clock time and date at job start Sat Apr 11 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 C 1.53007 * 109.46868 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46897 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46630 * 304.99277 * 5 4 3 7 7 C 1.52995 * 109.46929 * 184.99990 * 5 4 3 8 8 O 1.42903 * 109.46925 * 304.99544 * 7 5 4 9 9 C 1.42907 * 113.99754 * 180.02562 * 8 7 5 10 10 N 1.46492 * 109.47330 * 64.99560 * 5 4 3 11 11 C 1.34780 * 120.00260 * 204.99766 * 10 5 4 12 12 O 1.21351 * 119.99577 * 0.02562 * 11 10 5 13 13 C 1.49449 * 120.00255 * 180.02562 * 11 10 5 14 14 O 1.21344 * 120.00219 * 6.74556 * 13 11 10 15 15 N 1.34773 * 119.99812 * 186.75221 * 13 11 10 16 16 C 1.46928 * 120.63420 * 8.42012 * 15 13 11 17 17 C 1.53617 * 108.54284 * 126.37261 * 16 15 13 18 18 C 1.53043 * 109.24135 * 54.85941 * 17 16 15 19 19 C 1.53034 * 109.53831 * 298.50729 * 18 17 16 20 20 H 1.08999 * 109.50046 * 301.41400 * 19 18 17 21 21 C 1.50700 * 109.52560 * 181.33321 * 19 18 17 22 22 H 1.07997 * 120.00071 * 0.14978 * 21 19 18 23 23 C 1.37877 * 119.99962 * 180.14967 * 21 19 18 24 24 N 1.31516 * 120.00159 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99791 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47434 * 59.99588 * 25 23 21 27 27 H 1.48503 * 109.47029 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46865 * 299.99640 * 25 23 21 29 29 C 1.46930 * 120.63025 * 188.70636 * 15 13 11 30 30 H 1.09001 * 109.46741 * 299.99402 * 1 2 3 31 31 H 1.08997 * 109.47281 * 59.99487 * 1 2 3 32 32 H 1.08997 * 109.46950 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46741 * 240.00598 * 2 1 3 34 34 H 1.08998 * 109.47802 * 120.00506 * 2 1 3 35 35 H 1.09001 * 109.46911 * 60.00702 * 3 2 1 36 36 H 1.08997 * 109.47549 * 300.00350 * 3 2 1 37 37 H 1.08998 * 109.47458 * 59.99836 * 4 3 2 38 38 H 1.09007 * 109.46744 * 299.99648 * 4 3 2 39 39 H 1.09005 * 109.47168 * 184.99853 * 7 5 4 40 40 H 1.08997 * 109.47764 * 64.99726 * 7 5 4 41 41 H 1.09002 * 109.46799 * 179.97438 * 9 8 7 42 42 H 1.09000 * 109.46712 * 299.99735 * 9 8 7 43 43 H 1.08993 * 109.46989 * 59.99886 * 9 8 7 44 44 H 0.97007 * 120.00437 * 25.00464 * 10 5 4 45 45 H 1.09003 * 109.58782 * 246.21080 * 16 15 13 46 46 H 1.08995 * 109.58207 * 6.62929 * 16 15 13 47 47 H 1.09000 * 109.63748 * 294.86710 * 17 16 15 48 48 H 1.09000 * 109.43393 * 174.72938 * 17 16 15 49 49 H 1.09003 * 109.45711 * 178.49315 * 18 17 16 50 50 H 1.08994 * 109.44873 * 58.52518 * 18 17 16 51 51 H 0.97004 * 119.99565 * 180.02562 * 24 23 21 52 52 H 1.08997 * 109.58481 * 353.37173 * 29 15 13 53 53 H 1.08998 * 109.58780 * 113.79299 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6451 3.4245 -0.8414 7 6 5.6047 2.8869 -0.1264 8 8 6.1696 2.0825 0.9109 9 6 7.5969 2.0173 0.8837 10 7 3.6929 3.5393 1.2522 11 6 3.5661 4.8803 1.3008 12 8 3.7722 5.5455 0.3071 13 6 3.1718 5.5478 2.5785 14 8 3.0849 4.8991 3.6003 15 7 2.9124 6.8702 2.5957 16 6 2.8324 7.6338 1.3430 17 6 1.4912 8.3823 1.3120 18 6 1.3598 9.2343 2.5765 19 6 1.3762 8.3272 3.8089 20 1 0.5581 7.6099 3.7436 21 6 1.2139 9.1634 5.0520 22 1 1.1069 10.2351 4.9718 23 6 1.2019 8.5603 6.2918 24 7 1.3317 7.2552 6.3895 25 14 1.0000 9.5969 7.8327 26 1 -0.2938 10.3234 7.7746 27 1 1.0193 8.7158 9.0280 28 1 2.1137 10.5753 7.9204 29 6 2.7105 7.5770 3.8680 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9285 0.8892 39 1 5.9755 3.9081 -0.0368 40 1 5.8895 2.4809 -1.0970 41 1 7.9475 1.3886 1.7023 42 1 7.9232 1.5933 -0.0660 43 1 8.0086 3.0204 0.9944 44 1 3.5279 3.0075 2.0466 45 1 3.6541 8.3486 1.2976 46 1 2.8915 6.9517 0.4950 47 1 0.6720 7.6645 1.2702 48 1 1.4558 9.0268 0.4337 49 1 0.4212 9.7877 2.5455 50 1 2.1929 9.9350 2.6302 51 1 1.3229 6.8310 7.2618 52 1 2.6892 6.8573 4.6863 53 1 3.5224 8.2872 4.0243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328016182.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:33 Heat of formation + Delta-G solvation = -147.595696 kcal Electronic energy + Delta-G solvation = -31261.357074 eV Core-core repulsion = 27131.994585 eV Total energy + Delta-G solvation = -4129.362488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98009 -40.17959 -38.89558 -38.49244 -37.31389 -35.54264 -35.03102 -33.46312 -32.20328 -31.56353 -29.55912 -27.74647 -27.08546 -26.74111 -25.09787 -24.28307 -23.50069 -21.97841 -21.76968 -21.54828 -20.44434 -18.81416 -18.32810 -18.01782 -17.47141 -17.07939 -16.87605 -16.55796 -16.45515 -16.30475 -16.03973 -15.71816 -15.41677 -14.94094 -14.79454 -14.64476 -14.61358 -14.37342 -14.13075 -13.92784 -13.61671 -13.45930 -13.32697 -13.23953 -12.96283 -12.84344 -12.69227 -12.52527 -12.28353 -12.25486 -12.16131 -11.97937 -11.87604 -11.76006 -11.64101 -11.47501 -11.39397 -11.14248 -10.97841 -10.63668 -10.53832 -10.34581 -10.02117 -9.53573 -8.10884 -6.28195 0.38188 1.36818 1.42242 1.44784 1.51748 2.15629 2.41614 2.58286 2.87004 3.16760 3.33314 3.60249 3.91929 4.06572 4.12791 4.17271 4.27907 4.29934 4.34412 4.35066 4.44327 4.50552 4.54773 4.58896 4.61477 4.62565 4.72385 4.81261 4.84105 4.86613 4.90390 4.91649 5.04142 5.05419 5.07019 5.17881 5.21994 5.23259 5.28387 5.33287 5.36196 5.45296 5.52125 5.53443 5.57571 5.84727 5.94409 6.02317 6.20744 6.30553 6.44800 6.74694 6.84000 7.01042 7.41671 8.92445 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.002827 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.526097 B = 9901.101174 C =10351.969685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.124 4.124 4 C -0.111 4.111 5 C 0.144 3.856 6 H 0.111 0.889 7 C 0.049 3.951 8 O -0.404 6.404 9 C 0.027 3.973 10 N -0.677 5.677 11 C 0.522 3.478 12 O -0.523 6.523 13 C 0.483 3.517 14 O -0.558 6.558 15 N -0.577 5.577 16 C 0.071 3.929 17 C -0.125 4.125 18 C -0.107 4.107 19 C 0.041 3.959 20 H -0.011 1.011 21 C -0.538 4.538 22 H 0.063 0.937 23 C 0.011 3.989 24 N -0.913 5.913 25 Si 0.959 3.041 26 H -0.269 1.269 27 H -0.287 1.287 28 H -0.268 1.268 29 C 0.121 3.879 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.034 0.966 44 H 0.414 0.586 45 H 0.072 0.928 46 H 0.140 0.860 47 H 0.048 0.952 48 H 0.101 0.899 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.261 0.739 52 H 0.084 0.916 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.647 -13.201 -18.710 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.161 4.161 4 C -0.149 4.149 5 C 0.041 3.959 6 H 0.128 0.872 7 C -0.028 4.028 8 O -0.323 6.323 9 C -0.069 4.069 10 N -0.328 5.328 11 C 0.303 3.697 12 O -0.402 6.402 13 C 0.265 3.735 14 O -0.437 6.437 15 N -0.309 5.309 16 C -0.049 4.049 17 C -0.163 4.163 18 C -0.144 4.144 19 C 0.021 3.979 20 H 0.007 0.993 21 C -0.576 4.576 22 H 0.081 0.919 23 C -0.189 4.189 24 N -0.552 5.552 25 Si 0.784 3.216 26 H -0.194 1.194 27 H -0.213 1.213 28 H -0.193 1.193 29 C -0.001 4.001 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.251 0.749 45 H 0.090 0.910 46 H 0.157 0.843 47 H 0.067 0.933 48 H 0.119 0.881 49 H 0.073 0.927 50 H 0.076 0.924 51 H 0.070 0.930 52 H 0.102 0.898 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.647 -13.317 -18.627 24.140 hybrid contribution -0.091 0.554 1.764 1.851 sum 7.556 -12.763 -16.863 22.458 Atomic orbital electron populations 1.21803 0.96249 1.01863 1.01480 1.21490 0.95603 0.96113 1.02535 1.21660 0.95148 0.97517 1.01800 1.21758 0.95276 0.93104 1.04743 1.21506 0.92966 0.95222 0.86201 0.87158 1.23026 0.93280 0.94543 0.91998 1.87862 1.21363 1.70366 1.52724 1.22873 0.79953 1.01069 1.02995 1.45888 1.66375 1.05133 1.15412 1.19882 0.78231 0.83954 0.87641 1.90430 1.50682 1.62902 1.36204 1.20616 0.79669 0.83532 0.89641 1.90749 1.52874 1.64079 1.36028 1.48462 1.65251 1.07100 1.10051 1.23020 0.97869 0.97309 0.86740 1.21999 0.96599 0.98981 0.98731 1.21551 1.00942 0.97757 0.94171 1.18878 0.91692 0.93529 0.93767 0.99316 1.21464 1.50544 0.94010 0.91590 0.91926 1.25892 0.94556 0.95953 1.02451 1.70067 1.50051 1.10158 1.24905 0.85598 0.79035 0.78518 0.78436 1.19423 1.21314 1.19259 1.21939 0.98214 0.95790 0.84143 0.93954 0.92542 0.92049 0.90603 0.92178 0.93729 0.91499 0.87816 0.90790 0.94305 0.89280 0.88912 0.92178 0.94685 0.74936 0.90990 0.84273 0.93290 0.88114 0.92735 0.92442 0.92998 0.89755 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.12 -1.71 5.93 30.59 0.18 -1.53 16 3 C -0.12 -2.02 5.10 30.60 0.16 -1.86 16 4 C -0.11 -1.63 4.47 30.60 0.14 -1.49 16 5 C 0.14 2.72 2.37 44.99 0.11 2.82 16 6 H 0.11 2.01 7.58 -2.39 -0.02 1.99 16 7 C 0.05 0.88 5.74 71.98 0.41 1.29 16 8 O -0.40 -8.18 9.87 -148.98 -1.47 -9.65 16 9 C 0.03 0.41 11.01 113.37 1.25 1.66 16 10 N -0.68 -17.79 4.47 -443.88 -1.98 -19.78 16 11 C 0.52 17.12 7.71 87.27 0.67 17.79 16 12 O -0.52 -16.74 12.84 -3.25 -0.04 -16.78 16 13 C 0.48 20.42 7.73 87.27 0.67 21.09 16 14 O -0.56 -27.53 15.93 -3.23 -0.05 -27.58 16 15 N -0.58 -24.85 2.97 -819.66 -2.43 -27.28 16 16 C 0.07 2.46 6.01 86.51 0.52 2.98 16 17 C -0.13 -4.20 6.10 30.82 0.19 -4.01 16 18 C -0.11 -4.33 5.11 30.62 0.16 -4.18 16 19 C 0.04 2.10 2.25 -11.46 -0.03 2.07 16 20 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 21 C -0.54 -29.90 8.57 25.60 0.22 -29.68 16 22 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 23 C 0.01 0.63 5.30 84.65 0.45 1.08 16 24 N -0.91 -55.30 11.39 21.45 0.24 -55.06 16 25 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 29 C 0.12 6.17 5.41 86.36 0.47 6.63 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.04 0.93 7.75 -2.39 -0.02 0.91 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.23 7.73 -2.38 -0.02 1.21 16 39 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.03 0.55 8.14 -2.39 -0.02 0.54 16 44 H 0.41 11.39 8.09 -92.70 -0.75 10.64 16 45 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.14 4.53 4.30 -48.52 -0.21 4.32 16 47 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 49 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 52 H 0.08 5.03 5.12 -2.39 -0.01 5.02 16 53 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -69.63 418.36 2.50 -67.13 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.07 Total: 29.69 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.28 Total: 12.98 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -4.17 Total: -102.12 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -1.56 Total: -54.01 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.63 2.50 -67.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328016182.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.467 kcal (2) G-P(sol) polarization free energy of solvation -69.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds