Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47258 * 2 1 4 4 O 1.42902 * 109.47449 * 60.34067 * 3 2 1 5 5 C 1.53005 * 109.47330 * 180.34096 * 3 2 1 6 6 C 1.53003 * 109.46882 * 304.12917 * 5 3 2 7 7 C 1.52999 * 109.47046 * 300.33830 * 3 2 1 8 8 C 1.53008 * 109.47256 * 184.99699 * 7 3 2 9 9 N 1.46493 * 109.47028 * 180.02562 * 8 7 3 10 10 C 1.34777 * 120.00012 * 180.02562 * 9 8 7 11 11 O 1.21356 * 119.99828 * 359.97438 * 10 9 8 12 12 C 1.49448 * 120.00369 * 180.02562 * 10 9 8 13 13 O 1.21349 * 119.99787 * 6.65389 * 12 10 9 14 14 N 1.34780 * 120.00161 * 186.66154 * 12 10 9 15 15 C 1.46923 * 120.62906 * 6.82677 * 14 12 10 16 16 C 1.53195 * 108.77366 * 233.58501 * 15 14 12 17 17 C 1.53039 * 109.31319 * 305.36217 * 16 15 14 18 18 C 1.53042 * 109.53354 * 61.36566 * 17 16 15 19 19 H 1.09003 * 109.49698 * 58.58860 * 18 17 16 20 20 C 1.50700 * 109.49601 * 178.68386 * 18 17 16 21 21 H 1.08000 * 120.00256 * 359.97438 * 20 18 17 22 22 C 1.37882 * 120.00252 * 180.02562 * 20 18 17 23 23 N 1.31519 * 119.99515 * 359.97438 * 22 20 18 24 24 Si 1.86791 * 120.00215 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47377 * 89.99727 * 24 22 20 26 26 H 1.48504 * 109.47432 * 209.99640 * 24 22 20 27 27 H 1.48501 * 109.47344 * 329.99860 * 24 22 20 28 28 C 1.46923 * 120.63009 * 186.54590 * 14 12 10 29 29 H 1.09002 * 109.47120 * 184.98377 * 1 2 3 30 30 H 1.09001 * 109.47023 * 304.98323 * 1 2 3 31 31 H 1.09003 * 109.47115 * 64.98041 * 1 2 3 32 32 H 1.09003 * 109.47318 * 239.99908 * 2 1 3 33 33 H 1.09001 * 109.46735 * 119.99699 * 2 1 3 34 34 H 0.96704 * 113.99525 * 300.00272 * 4 3 2 35 35 H 1.08994 * 109.47171 * 64.12768 * 5 3 2 36 36 H 1.08995 * 109.46988 * 184.13207 * 5 3 2 37 37 H 1.08997 * 109.46773 * 175.26874 * 6 5 3 38 38 H 1.09001 * 109.46833 * 295.27144 * 6 5 3 39 39 H 1.09002 * 109.47154 * 55.27079 * 6 5 3 40 40 H 1.09003 * 109.46791 * 65.00461 * 7 3 2 41 41 H 1.08998 * 109.47319 * 304.99975 * 7 3 2 42 42 H 1.08998 * 109.47182 * 300.00360 * 8 7 3 43 43 H 1.08998 * 109.46721 * 60.00164 * 8 7 3 44 44 H 0.96999 * 120.00637 * 0.02562 * 9 8 7 45 45 H 1.09000 * 109.59006 * 353.36777 * 15 14 12 46 46 H 1.08999 * 109.59035 * 113.65592 * 15 14 12 47 47 H 1.09000 * 109.49503 * 65.31957 * 16 15 14 48 48 H 1.09005 * 109.49478 * 185.41404 * 16 15 14 49 49 H 1.08993 * 109.45978 * 181.38285 * 17 16 15 50 50 H 1.08997 * 109.46253 * 301.36274 * 17 16 15 51 51 H 0.96998 * 119.99511 * 179.97438 * 23 22 20 52 52 H 1.09000 * 109.58672 * 246.20166 * 28 14 12 53 53 H 1.08998 * 109.59033 * 6.62655 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.5703 2.1138 1.1708 5 6 3.5700 1.4424 -0.0086 6 6 4.0867 0.6307 1.1810 7 6 1.5231 2.1661 -1.2450 8 6 2.1328 3.5680 -1.3101 9 7 1.6373 4.2611 -2.5018 10 6 2.0426 5.5187 -2.7672 11 8 2.8177 6.0771 -2.0188 12 6 1.5368 6.2261 -3.9826 13 8 0.6713 5.7175 -4.6644 14 7 2.0420 7.4288 -4.3216 15 6 3.1901 7.9897 -3.5965 16 6 2.8244 9.3937 -3.1047 17 6 2.3561 10.2396 -4.2910 18 6 1.1092 9.6051 -4.9113 19 1 0.3244 9.5336 -4.1582 20 6 0.6299 10.4559 -6.0590 21 1 1.1609 11.3594 -6.3201 22 6 -0.4873 10.0816 -6.7753 23 7 -1.1343 8.9817 -6.4570 24 14 -1.0818 11.1366 -8.1974 25 1 -0.4308 10.6862 -9.4539 26 1 -2.5552 11.0056 -8.3289 27 1 -0.7320 12.5567 -7.9404 28 6 1.4589 8.2010 -5.4272 29 1 -0.3633 -1.0238 0.0893 30 1 -0.3633 0.5892 0.8420 31 1 -0.3633 0.4346 -0.9313 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.6066 2.1518 1.2423 35 1 3.9282 0.9959 -0.9361 36 1 3.9337 2.4673 0.0655 37 1 5.1731 0.5600 1.1282 38 1 3.7993 1.1240 2.1096 39 1 3.6556 -0.3700 1.1527 40 1 0.4370 2.2443 -1.1950 41 1 1.8065 1.6050 -2.1354 42 1 1.8494 4.1291 -0.4196 43 1 3.2188 3.4898 -1.3599 44 1 1.0175 3.8149 -3.0999 45 1 3.4294 7.3547 -2.7436 46 1 4.0509 8.0464 -4.2628 47 1 2.0235 9.3242 -2.3686 48 1 3.6987 9.8587 -2.6490 49 1 2.1186 11.2464 -3.9477 50 1 3.1485 10.2879 -5.0379 51 1 -1.9204 8.7185 -6.9606 52 1 2.1806 8.2768 -6.2405 53 1 0.5555 7.7053 -5.7827 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328076061.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -149.817955 kcal Electronic energy + Delta-G solvation = -30814.167161 eV Core-core repulsion = 26684.708308 eV Total energy + Delta-G solvation = -4129.458853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.96469 -40.35928 -39.61316 -38.53216 -36.38473 -35.15294 -34.41664 -33.46606 -32.69032 -31.60654 -31.55474 -27.92680 -27.00171 -26.41101 -24.55204 -23.85486 -23.52828 -23.07672 -21.70447 -20.74213 -20.38500 -18.94306 -18.25414 -17.92426 -17.37490 -17.17993 -16.88342 -16.51024 -16.19011 -16.04544 -15.67227 -15.61186 -15.46083 -14.94865 -14.93917 -14.64298 -14.48526 -14.46541 -14.44751 -13.84386 -13.50314 -13.38949 -13.10499 -13.02496 -12.88035 -12.86259 -12.65818 -12.48651 -12.45862 -12.31213 -12.19584 -12.16174 -11.93051 -11.72232 -11.61973 -11.54750 -11.22677 -11.15408 -10.99209 -10.71384 -10.56264 -10.33190 -9.98335 -9.55237 -8.12918 -6.29180 0.34555 1.34602 1.41965 1.42925 1.53063 2.14651 2.40981 2.57167 3.15372 3.29483 3.35524 3.70089 3.80351 3.88823 4.11112 4.15123 4.18524 4.22672 4.34075 4.36484 4.51346 4.55212 4.57347 4.62067 4.66442 4.71772 4.79577 4.80880 4.82373 4.89903 5.03791 5.05112 5.11492 5.14544 5.15306 5.20513 5.23075 5.24526 5.27864 5.31608 5.39665 5.47764 5.52771 5.53559 5.56329 5.82891 5.92691 6.00063 6.29171 6.44214 6.74408 6.83052 6.88529 6.97875 7.40539 8.91452 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020367 B = 0.002230 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.418939 B =12551.375997 C =13509.703876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.147 4.147 3 C 0.143 3.857 4 O -0.570 6.570 5 C -0.121 4.121 6 C -0.149 4.149 7 C -0.154 4.154 8 C 0.119 3.881 9 N -0.685 5.685 10 C 0.519 3.481 11 O -0.521 6.521 12 C 0.485 3.515 13 O -0.559 6.559 14 N -0.575 5.575 15 C 0.049 3.951 16 C -0.120 4.120 17 C -0.107 4.107 18 C 0.039 3.961 19 H -0.012 1.012 20 C -0.535 4.535 21 H 0.063 0.937 22 C 0.010 3.990 23 N -0.916 5.916 24 Si 0.960 3.040 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.265 1.265 28 C 0.121 3.879 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.384 0.616 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.418 0.582 45 H 0.155 0.845 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.098 0.902 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.262 0.738 52 H 0.045 0.955 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.537 -19.460 14.099 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.184 4.184 3 C 0.102 3.898 4 O -0.379 6.379 5 C -0.158 4.158 6 C -0.206 4.206 7 C -0.192 4.192 8 C -0.003 4.003 9 N -0.338 5.338 10 C 0.300 3.700 11 O -0.400 6.400 12 C 0.268 3.732 13 O -0.438 6.438 14 N -0.306 5.306 15 C -0.071 4.071 16 C -0.158 4.158 17 C -0.144 4.144 18 C 0.020 3.980 19 H 0.007 0.993 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.554 5.554 24 Si 0.785 3.215 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.189 1.189 28 C -0.001 4.001 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.234 0.766 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.255 0.745 45 H 0.171 0.829 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.116 0.884 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.071 0.929 52 H 0.063 0.937 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.124 -19.382 14.341 25.779 hybrid contribution -1.689 0.523 -1.416 2.265 sum 7.435 -18.859 12.925 24.042 Atomic orbital electron populations 1.21887 0.95203 1.02619 1.02241 1.22222 0.96760 0.95839 1.03590 1.21130 0.94359 0.90931 0.83360 1.86559 1.27893 1.79610 1.43842 1.21668 0.92669 1.01315 1.00162 1.21762 1.00743 1.00193 0.97894 1.22564 1.02142 0.93882 1.00634 1.21652 0.99652 0.93066 0.85927 1.45851 1.47106 1.13049 1.27744 1.19975 0.81385 0.83117 0.85546 1.90282 1.35336 1.64684 1.49714 1.20488 0.83426 0.83000 0.86311 1.90722 1.32967 1.66322 1.53812 1.48472 1.31738 1.16869 1.33493 1.23314 0.86417 0.97551 0.99849 1.21821 1.01522 0.95044 0.97450 1.21563 0.97493 0.98413 0.96974 1.18986 0.92952 0.91471 0.94614 0.99338 1.21485 1.11511 1.08791 1.15541 0.91912 1.25897 0.96606 0.96305 1.00105 1.70058 1.19484 1.24485 1.41389 0.85520 0.77169 0.79359 0.79404 1.19926 1.21180 1.18908 1.22043 0.97718 0.93723 0.86580 0.91994 0.92134 0.92151 0.90207 0.90608 0.76617 0.89426 0.92008 0.92479 0.93388 0.91625 0.89521 0.88766 0.91351 0.90481 0.74526 0.82883 0.91042 0.93627 0.88395 0.92814 0.92360 0.92931 0.93682 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.23 71.98 0.66 -0.63 16 2 C -0.15 -1.30 4.74 30.59 0.14 -1.15 16 3 C 0.14 1.66 0.53 -10.79 -0.01 1.66 16 4 O -0.57 -8.19 12.06 -148.98 -1.80 -9.98 16 5 C -0.12 -1.53 4.59 30.60 0.14 -1.39 16 6 C -0.15 -1.81 9.43 71.98 0.68 -1.13 16 7 C -0.15 -1.87 4.08 30.60 0.12 -1.75 16 8 C 0.12 2.23 5.08 86.38 0.44 2.67 16 9 N -0.69 -16.77 5.55 -464.41 -2.58 -19.34 16 10 C 0.52 16.99 7.78 87.27 0.68 17.67 16 11 O -0.52 -17.59 13.10 -3.27 -0.04 -17.63 16 12 C 0.49 20.11 7.74 87.27 0.68 20.78 16 13 O -0.56 -26.32 15.94 -3.24 -0.05 -26.37 16 14 N -0.57 -24.63 2.97 -819.66 -2.43 -27.06 16 15 C 0.05 1.71 6.27 86.36 0.54 2.26 16 16 C -0.12 -4.19 6.08 30.67 0.19 -4.00 16 17 C -0.11 -4.40 5.10 30.62 0.16 -4.24 16 18 C 0.04 2.02 2.26 -11.32 -0.03 1.99 16 19 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 20 C -0.53 -29.65 8.56 25.60 0.22 -29.43 16 21 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 22 C 0.01 0.58 5.30 84.66 0.45 1.03 16 23 N -0.92 -54.88 11.41 21.45 0.24 -54.64 16 24 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 28 C 0.12 6.13 5.41 86.51 0.47 6.60 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.43 6.55 -2.39 -0.02 0.41 16 31 H 0.06 0.49 6.82 -2.39 -0.02 0.47 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.72 6.27 -2.39 -0.01 0.70 16 34 H 0.38 3.55 7.24 -74.05 -0.54 3.01 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.96 6.60 -2.39 -0.02 0.95 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.05 0.72 7.93 -2.39 -0.02 0.70 16 39 H 0.06 0.66 6.10 -2.39 -0.01 0.65 16 40 H 0.09 0.95 6.82 -2.39 -0.02 0.93 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.48 7.82 -2.39 -0.02 1.46 16 43 H 0.08 1.46 6.44 -2.39 -0.02 1.45 16 44 H 0.42 9.47 7.96 -92.71 -0.74 8.74 16 45 H 0.16 5.16 3.78 -78.89 -0.30 4.86 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 49 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 51 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 52 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 53 H 0.08 4.97 5.20 -2.39 -0.01 4.96 16 Total: -1.00 -70.19 403.35 0.27 -69.91 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.64 Total: 28.10 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 5.54 Total: 10.94 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -4.76 Total: -101.04 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -1.89 Total: -53.98 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.19 0.27 -69.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328076061.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.905 kcal (2) G-P(sol) polarization free energy of solvation -70.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds