Wall clock time and date at job start Sat Apr 11 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99894 * 2 1 4 4 H 1.09001 * 109.47450 * 30.00146 * 3 2 1 5 5 C 1.53001 * 109.46929 * 149.99749 * 3 2 1 6 6 C 1.53004 * 109.47354 * 296.80442 * 5 3 2 7 7 C 1.52992 * 109.46912 * 294.99992 * 6 5 3 8 8 C 1.52997 * 109.47068 * 174.99875 * 6 5 3 9 9 C 1.50697 * 109.47180 * 269.99588 * 3 2 1 10 10 O 1.21281 * 119.99978 * 347.72257 * 9 3 2 11 11 N 1.34777 * 119.99725 * 167.71706 * 9 3 2 12 12 C 1.47083 * 125.63564 * 4.69203 * 11 9 3 13 13 C 1.54453 * 107.30188 * 180.95332 * 12 11 9 14 14 C 1.54372 * 102.86557 * 21.50484 * 13 12 11 15 15 C 1.47573 * 125.62687 * 184.37863 * 11 9 3 16 16 C 1.52357 * 110.38502 * 207.57897 * 14 13 12 17 17 N 1.47329 * 108.41370 * 286.57691 * 16 14 13 18 18 C 1.36938 * 121.07395 * 130.80425 * 17 16 14 19 19 H 1.07996 * 119.99761 * 205.66497 * 18 17 16 20 20 C 1.38812 * 120.00079 * 25.66127 * 18 17 16 21 21 N 1.31618 * 120.00068 * 14.65790 * 20 18 17 22 22 Si 1.86797 * 119.99962 * 194.65569 * 20 18 17 23 23 H 1.48504 * 109.46902 * 90.00068 * 22 20 18 24 24 H 1.48501 * 109.47283 * 210.00085 * 22 20 18 25 25 H 1.48498 * 109.47341 * 330.00351 * 22 20 18 26 26 C 1.47168 * 117.84930 * 310.82378 * 17 16 14 27 27 C 1.53272 * 108.55268 * 51.23297 * 26 17 16 28 28 O 1.41883 * 110.72131 * 83.68022 * 14 13 12 29 29 H 1.08998 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47008 * 300.00366 * 1 2 3 31 31 H 1.09009 * 109.46530 * 59.99838 * 1 2 3 32 32 H 1.08998 * 109.47013 * 176.80429 * 5 3 2 33 33 H 1.09000 * 109.47039 * 56.80453 * 5 3 2 34 34 H 1.09004 * 109.46927 * 54.99925 * 6 5 3 35 35 H 1.08994 * 109.47657 * 300.00050 * 7 6 5 36 36 H 1.09006 * 109.47448 * 60.00117 * 7 6 5 37 37 H 1.09001 * 109.46913 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47222 * 60.00179 * 8 6 5 39 39 H 1.09001 * 109.46864 * 180.02562 * 8 6 5 40 40 H 1.08996 * 109.47359 * 299.99835 * 8 6 5 41 41 H 1.08998 * 109.87582 * 300.38360 * 12 11 9 42 42 H 1.09011 * 109.87502 * 61.52783 * 12 11 9 43 43 H 1.09005 * 110.73420 * 139.85107 * 13 12 11 44 44 H 1.08994 * 110.73908 * 263.15648 * 13 12 11 45 45 H 1.09005 * 110.38066 * 275.54278 * 15 11 9 46 46 H 1.08999 * 110.38097 * 37.89525 * 15 11 9 47 47 H 1.09006 * 109.67536 * 46.30659 * 16 14 13 48 48 H 1.08999 * 109.67438 * 166.84404 * 16 14 13 49 49 H 0.96996 * 120.00271 * 179.97438 * 21 20 18 50 50 H 1.08994 * 109.62336 * 291.50646 * 26 17 16 51 51 H 1.09000 * 109.77362 * 171.04080 * 26 17 16 52 52 H 1.09007 * 109.50859 * 187.06784 * 27 26 17 53 53 H 1.08994 * 109.51635 * 66.92044 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3589 1.2633 0.7213 6 6 3.1425 0.8744 2.1852 7 6 2.3403 1.9697 2.8905 8 6 4.4982 0.7105 2.8751 9 6 2.2147 1.7643 -1.4208 10 8 2.1074 0.9742 -2.3346 11 7 2.5165 3.0529 -1.6759 12 6 2.7712 4.0898 -0.6644 13 6 3.0501 5.4085 -1.4186 14 6 2.3989 5.1611 -2.7961 15 6 2.6525 3.6547 -3.0164 16 6 3.1013 5.9819 -3.8704 17 7 2.7150 7.3939 -3.7041 18 6 3.6582 8.3863 -3.6771 19 1 3.4518 9.3135 -3.1633 20 6 4.8796 8.2004 -4.3100 21 7 5.0326 7.2147 -5.1686 22 14 6.3059 9.3494 -3.9432 23 1 7.0948 8.8117 -2.8057 24 1 7.1759 9.4570 -5.1419 25 1 5.7812 10.6930 -3.5902 26 6 1.2827 7.7032 -3.5676 27 6 0.6936 6.8110 -2.4694 28 8 1.0093 5.4441 -2.7526 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 3.8282 2.2458 0.6720 33 1 4.0046 0.5277 0.2417 34 1 2.5939 -0.0663 2.2339 35 1 2.8888 2.9103 2.8418 36 1 1.3744 2.0865 2.3990 37 1 2.1857 1.6925 3.9333 38 1 5.0467 1.6511 2.8264 39 1 4.3439 0.4330 3.9179 40 1 5.0696 -0.0699 2.3726 41 1 1.8962 4.2065 -0.0249 42 1 3.6383 3.8161 -0.0632 43 1 2.5760 6.2499 -0.9131 44 1 4.1224 5.5742 -1.5228 45 1 3.6569 3.4896 -3.4066 46 1 1.9077 3.2405 -3.6959 47 1 4.1813 5.8816 -3.7614 48 1 2.7975 5.6320 -4.8569 49 1 5.8859 7.0850 -5.6111 50 1 0.7741 7.5064 -4.5113 51 1 1.1560 8.7510 -3.2952 52 1 -0.3889 6.9362 -2.4403 53 1 1.1191 7.0908 -1.5057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330160562.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:10 Heat of formation + Delta-G solvation = -118.442286 kcal Electronic energy + Delta-G solvation = -32401.473504 eV Core-core repulsion = 28273.375203 eV Total energy + Delta-G solvation = -4128.098302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79848 -40.57950 -38.72038 -37.56557 -36.73273 -36.25486 -33.30547 -33.11139 -31.20311 -30.90625 -29.08513 -27.98997 -27.65866 -27.13984 -25.62085 -24.96778 -23.74474 -22.96706 -20.96009 -20.69169 -20.21998 -18.91648 -18.67783 -17.86438 -17.52312 -16.97392 -16.65149 -16.42149 -16.30309 -16.09917 -15.75082 -15.53331 -15.19124 -15.12177 -14.92243 -14.71847 -14.57611 -14.40793 -14.00190 -13.75083 -13.66939 -13.47451 -13.20331 -13.04154 -12.94938 -12.80331 -12.65500 -12.63183 -12.48394 -12.35494 -12.17702 -12.11105 -11.93929 -11.87589 -11.82598 -11.53544 -11.47357 -11.38702 -11.16404 -10.78520 -10.48465 -10.34287 -9.74036 -8.72854 -7.87822 -5.35427 1.44988 1.48951 1.50130 1.58785 1.76184 2.49109 2.70257 2.74598 3.24442 3.30743 3.48282 3.56816 3.76790 3.83919 3.90088 3.98207 4.08849 4.13970 4.22029 4.28687 4.35980 4.37521 4.45949 4.48055 4.52195 4.56212 4.57716 4.67169 4.73012 4.77570 4.79497 4.84293 4.91147 4.91958 5.01389 5.02557 5.05327 5.10304 5.12039 5.13368 5.19546 5.27015 5.35704 5.49266 5.52930 5.57315 5.62836 5.97326 6.30088 6.40385 6.44548 7.02655 7.07791 7.76187 8.30742 9.18150 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.003204 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.365617 B = 8735.964541 C = 9473.900131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.375 6.375 3 C 0.089 3.911 4 H 0.111 0.889 5 C -0.109 4.109 6 C -0.088 4.088 7 C -0.151 4.151 8 C -0.146 4.146 9 C 0.497 3.503 10 O -0.580 6.580 11 N -0.607 5.607 12 C 0.104 3.896 13 C -0.136 4.136 14 C 0.094 3.906 15 C 0.126 3.874 16 C 0.174 3.826 17 N -0.609 5.609 18 C -0.256 4.256 19 H 0.077 0.923 20 C -0.049 4.049 21 N -0.939 5.939 22 Si 0.968 3.032 23 H -0.281 1.281 24 H -0.301 1.301 25 H -0.268 1.268 26 C 0.102 3.898 27 C 0.053 3.947 28 O -0.383 6.383 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.025 0.975 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.075 0.925 48 H -0.012 1.012 49 H 0.250 0.750 50 H 0.010 0.990 51 H 0.076 0.924 52 H 0.117 0.883 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 -8.655 19.713 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.293 6.293 3 C 0.028 3.972 4 H 0.128 0.872 5 C -0.146 4.146 6 C -0.106 4.106 7 C -0.209 4.209 8 C -0.204 4.204 9 C 0.286 3.714 10 O -0.460 6.460 11 N -0.342 5.342 12 C -0.017 4.017 13 C -0.174 4.174 14 C 0.053 3.947 15 C 0.003 3.997 16 C 0.047 3.953 17 N -0.333 5.333 18 C -0.386 4.386 19 H 0.094 0.906 20 C -0.244 4.244 21 N -0.585 5.585 22 Si 0.796 3.204 23 H -0.207 1.207 24 H -0.228 1.228 25 H -0.192 1.192 26 C -0.023 4.023 27 C -0.024 4.024 28 O -0.303 6.303 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.006 0.994 49 H 0.059 0.941 50 H 0.028 0.972 51 H 0.094 0.906 52 H 0.135 0.865 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.876 -9.478 19.155 22.450 hybrid contribution 0.840 0.936 -1.204 1.742 sum -6.035 -8.541 17.951 20.775 Atomic orbital electron populations 1.23035 0.79563 1.04274 1.00389 1.87959 1.21389 1.25754 1.94175 1.22165 0.98942 0.86782 0.89349 0.87188 1.21829 0.93005 1.03579 0.96222 1.21013 0.97632 0.99906 0.92074 1.21942 0.99736 0.98493 1.00680 1.21824 0.95961 1.01958 1.00621 1.21903 0.75936 0.80080 0.93436 1.90673 1.53046 1.53628 1.48632 1.48679 1.68571 1.08852 1.08064 1.22396 1.02679 0.85966 0.90679 1.22931 1.01852 0.97540 0.95090 1.22391 0.82777 0.93023 0.96550 1.21925 1.01153 0.90907 0.85742 1.20885 0.98892 0.83125 0.92356 1.44329 1.01275 1.02160 1.85521 1.19541 0.94845 0.97377 1.26807 0.90563 1.25779 1.01961 1.00092 0.96596 1.70163 1.24451 1.34773 1.29159 0.85253 0.79336 0.79111 0.76666 1.20731 1.22829 1.19231 1.21790 0.84855 0.99108 0.96561 1.23183 1.00905 0.80774 0.97550 1.87645 1.22261 1.28056 1.92294 0.87868 0.91213 0.95623 0.88636 0.92083 0.91037 0.91620 0.92720 0.91601 0.92114 0.91572 0.93249 0.88947 0.88559 0.88533 0.90556 0.90559 0.91977 0.90632 0.99423 0.94105 0.97166 0.90586 0.86549 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.81 113.37 1.23 1.68 16 2 O -0.38 -9.48 9.29 -130.23 -1.21 -10.69 16 3 C 0.09 2.03 1.77 29.85 0.05 2.08 16 4 H 0.11 1.95 5.78 -2.39 -0.01 1.93 16 5 C -0.11 -2.04 4.31 30.60 0.13 -1.91 16 6 C -0.09 -1.26 2.86 -10.80 -0.03 -1.29 16 7 C -0.15 -1.66 8.95 71.98 0.64 -1.02 16 8 C -0.15 -1.86 9.19 71.98 0.66 -1.20 16 9 C 0.50 15.88 7.13 87.66 0.62 16.50 16 10 O -0.58 -24.09 16.85 15.71 0.26 -23.83 16 11 N -0.61 -18.45 3.33 -812.13 -2.71 -21.16 16 12 C 0.10 2.41 6.07 86.76 0.53 2.94 16 13 C -0.14 -4.07 5.87 31.55 0.19 -3.88 16 14 C 0.09 3.49 0.84 -10.09 -0.01 3.49 16 15 C 0.13 4.63 6.08 86.63 0.53 5.15 16 16 C 0.17 8.20 4.06 86.01 0.35 8.55 16 17 N -0.61 -29.00 2.98 -698.89 -2.08 -31.09 16 18 C -0.26 -13.16 9.68 84.03 0.81 -12.35 16 19 H 0.08 3.75 7.87 -2.91 -0.02 3.73 16 20 C -0.05 -2.61 5.01 84.86 0.43 -2.19 16 21 N -0.94 -53.91 10.99 21.65 0.24 -53.67 16 22 Si 0.97 42.70 29.58 68.60 2.03 44.73 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 C 0.10 3.99 6.71 86.34 0.58 4.57 16 27 C 0.05 1.65 6.78 72.07 0.49 2.13 16 28 O -0.38 -13.88 10.29 -148.95 -1.53 -15.41 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 31 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.10 1.56 5.51 -2.39 -0.01 1.55 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.16 7.64 -2.38 -0.02 1.14 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.58 6.50 -2.38 -0.02 0.57 16 37 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.70 7.95 -2.39 -0.02 1.68 16 42 H 0.10 1.74 6.02 -2.38 -0.01 1.73 16 43 H 0.10 2.71 6.08 -2.38 -0.01 2.70 16 44 H 0.08 2.49 7.82 -2.39 -0.02 2.47 16 45 H 0.08 2.89 8.00 -2.38 -0.02 2.87 16 46 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16 47 H 0.08 3.94 5.86 -2.38 -0.01 3.93 16 48 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 49 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 50 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 51 H 0.08 2.73 7.96 -2.39 -0.02 2.71 16 52 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 53 H 0.06 1.82 6.23 -2.39 -0.01 1.80 16 Total: -1.00 -70.94 404.02 3.08 -67.86 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.88 Total: 19.99 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 7.20 Total: 23.25 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -4.55 Total: -105.91 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -2.48 Total: -49.93 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -70.94 3.08 -67.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330160562.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.580 kcal (2) G-P(sol) polarization free energy of solvation -70.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds