Wall clock time and date at job start Sat Apr 11 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47298 * 2 1 4 4 C 1.53007 * 109.47114 * 240.00109 * 2 1 3 5 5 O 1.42902 * 109.46870 * 60.00178 * 4 2 1 6 6 C 1.53000 * 109.47174 * 120.00407 * 2 1 3 7 7 C 1.52997 * 109.46983 * 299.99822 * 6 2 1 8 8 C 1.53000 * 109.46983 * 180.02562 * 7 6 2 9 9 N 1.46509 * 109.47085 * 180.02562 * 8 7 6 10 10 C 1.34772 * 120.00133 * 180.02562 * 9 8 7 11 11 O 1.21356 * 119.99997 * 359.97438 * 10 9 8 12 12 C 1.49443 * 120.00027 * 180.02562 * 10 9 8 13 13 O 1.21346 * 120.00029 * 6.39405 * 12 10 9 14 14 N 1.34781 * 120.00185 * 186.39798 * 12 10 9 15 15 C 1.46931 * 120.62763 * 7.08583 * 14 12 10 16 16 C 1.53191 * 108.77475 * 233.58421 * 15 14 12 17 17 C 1.53037 * 109.31389 * 305.36533 * 16 15 14 18 18 C 1.53045 * 109.53861 * 61.36580 * 17 16 15 19 19 H 1.08999 * 109.49711 * 58.58396 * 18 17 16 20 20 C 1.50694 * 109.50013 * 178.68306 * 18 17 16 21 21 H 1.08005 * 119.99958 * 359.97438 * 20 18 17 22 22 C 1.37873 * 120.00399 * 179.97438 * 20 18 17 23 23 N 1.31515 * 119.99737 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 120.00256 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47161 * 90.00554 * 24 22 20 26 26 H 1.48506 * 109.47194 * 210.00411 * 24 22 20 27 27 H 1.48503 * 109.46975 * 330.00076 * 24 22 20 28 28 C 1.46920 * 120.63290 * 186.80293 * 14 12 10 29 29 H 1.09003 * 109.47104 * 299.99868 * 1 2 3 30 30 H 1.09001 * 109.46960 * 59.99726 * 1 2 3 31 31 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46963 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46869 * 300.00270 * 3 2 1 34 34 H 1.09006 * 109.46278 * 60.00351 * 3 2 1 35 35 H 1.08999 * 109.46788 * 179.97438 * 4 2 1 36 36 H 1.08998 * 109.47141 * 300.00030 * 4 2 1 37 37 H 0.96699 * 113.99825 * 179.97438 * 5 4 2 38 38 H 1.08998 * 109.47305 * 59.99833 * 6 2 1 39 39 H 1.09005 * 109.47038 * 179.97438 * 6 2 1 40 40 H 1.08998 * 109.47109 * 300.00131 * 7 6 2 41 41 H 1.08998 * 109.47257 * 59.99819 * 7 6 2 42 42 H 1.08998 * 109.47305 * 300.00011 * 8 7 6 43 43 H 1.08999 * 109.47138 * 60.00599 * 8 7 6 44 44 H 0.97000 * 119.99664 * 359.97438 * 9 8 7 45 45 H 1.09000 * 109.58885 * 353.37455 * 15 14 12 46 46 H 1.09000 * 109.58838 * 113.65793 * 15 14 12 47 47 H 1.09002 * 109.49693 * 65.31590 * 16 15 14 48 48 H 1.08994 * 109.49880 * 185.41172 * 16 15 14 49 49 H 1.09000 * 109.45982 * 181.38289 * 17 16 15 50 50 H 1.08999 * 109.46298 * 301.35833 * 17 16 15 51 51 H 0.97003 * 119.99849 * 179.97438 * 23 22 20 52 52 H 1.08998 * 109.58935 * 246.20163 * 28 14 12 53 53 H 1.09000 * 109.58751 * 6.63061 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.5636 -0.0475 -2.4160 6 6 2.0399 -0.7213 1.2492 7 6 1.5300 -0.0001 2.4984 8 6 2.0405 -0.7211 3.7476 9 7 1.5517 -0.0309 4.9439 10 6 1.8780 -0.4908 6.1680 11 8 2.5764 -1.4770 6.2793 12 6 1.3789 0.2129 7.3882 13 8 0.5874 1.1264 7.2807 14 7 1.8079 -0.1669 8.6081 15 6 2.8788 -1.1631 8.7483 16 6 2.3892 -2.2874 9.6665 17 6 1.9115 -1.6875 10.9909 18 6 0.7431 -0.7344 10.7291 19 1 -0.0662 -1.2766 10.2401 20 6 0.2524 -0.1690 12.0369 21 1 0.7260 -0.4604 12.9628 22 6 -0.8011 0.7203 12.0516 23 7 -1.3782 1.0747 10.9243 24 14 -1.4089 1.4216 13.6728 25 1 -0.6716 2.6740 13.9778 26 1 -2.8613 1.7143 13.5721 27 1 -1.1771 0.4340 14.7573 28 6 1.2179 0.4117 9.8229 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 3.1299 -0.7208 -1.2495 36 1 1.6766 -1.7489 -1.2493 37 1 1.8493 -0.4508 -3.2472 38 1 1.6766 -1.7490 1.2492 39 1 3.1300 -0.7217 1.2489 40 1 1.8933 1.0275 2.4985 41 1 0.4400 -0.0001 2.4985 42 1 1.6776 -1.7489 3.7478 43 1 3.1305 -0.7206 3.7474 44 1 0.9938 0.7576 4.8549 45 1 3.1273 -1.5729 7.7693 46 1 3.7612 -0.6925 9.1820 47 1 1.5644 -2.8150 9.1876 48 1 3.2059 -2.9838 9.8562 49 1 1.5855 -2.4877 11.6553 50 1 2.7298 -1.1390 11.4573 51 1 -2.1196 1.7001 10.9346 52 1 1.9667 1.0075 10.3447 53 1 0.3700 1.0413 9.5531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330839018.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:36 Heat of formation + Delta-G solvation = -154.267503 kcal Electronic energy + Delta-G solvation = -30186.619897 eV Core-core repulsion = 26056.968098 eV Total energy + Delta-G solvation = -4129.651800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93554 -39.95379 -39.45912 -38.52584 -37.09988 -35.88555 -35.11432 -33.46491 -32.15490 -31.55729 -28.14562 -28.11689 -27.46763 -26.97816 -26.25215 -23.97281 -23.47941 -22.66463 -21.61506 -20.42046 -19.53487 -18.87599 -18.28281 -18.16696 -17.84307 -17.17525 -16.80416 -16.49166 -16.30457 -16.14643 -15.86071 -15.53368 -15.44179 -15.20215 -14.87522 -14.58836 -14.52076 -14.44803 -14.06627 -13.78907 -13.62035 -13.46957 -13.17839 -13.11042 -12.90317 -12.85972 -12.57129 -12.53340 -12.46687 -12.30729 -12.17870 -11.94206 -11.71833 -11.64369 -11.52506 -11.40736 -11.23395 -11.15093 -10.98513 -10.80337 -10.56225 -10.32138 -9.98152 -9.54434 -8.12797 -6.29159 0.35915 1.36677 1.41976 1.43354 1.53059 2.16120 2.41072 2.59237 3.15560 3.28825 3.37550 3.81825 3.86846 4.05076 4.11256 4.15909 4.19488 4.23604 4.34231 4.43958 4.57957 4.59940 4.60344 4.66358 4.69787 4.72985 4.81663 4.81906 4.83380 4.90705 4.92133 5.05396 5.10496 5.12922 5.16473 5.19538 5.23818 5.25968 5.29428 5.31837 5.40833 5.52939 5.53557 5.56185 5.59153 5.83470 5.93087 6.01811 6.29451 6.45351 6.75316 6.83436 6.95817 6.99206 7.40657 8.91461 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.001944 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.931804 B =14399.682126 C =15353.206637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.139 4.139 4 C 0.084 3.916 5 O -0.590 6.590 6 C -0.100 4.100 7 C -0.129 4.129 8 C 0.116 3.884 9 N -0.687 5.687 10 C 0.520 3.480 11 O -0.520 6.520 12 C 0.484 3.516 13 O -0.560 6.560 14 N -0.575 5.575 15 C 0.049 3.951 16 C -0.120 4.120 17 C -0.106 4.106 18 C 0.038 3.962 19 H -0.011 1.011 20 C -0.535 4.535 21 H 0.063 0.937 22 C 0.010 3.990 23 N -0.915 5.915 24 Si 0.960 3.040 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.264 1.264 28 C 0.121 3.879 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.393 0.607 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.417 0.583 45 H 0.157 0.843 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.098 0.902 49 H 0.053 0.947 50 H 0.057 0.943 51 H 0.261 0.739 52 H 0.044 0.956 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.599 -4.907 -24.594 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.196 4.196 4 C 0.006 3.994 5 O -0.398 6.398 6 C -0.138 4.138 7 C -0.166 4.166 8 C -0.006 4.006 9 N -0.339 5.339 10 C 0.301 3.699 11 O -0.399 6.399 12 C 0.267 3.733 13 O -0.440 6.440 14 N -0.307 5.307 15 C -0.071 4.071 16 C -0.158 4.158 17 C -0.144 4.144 18 C 0.019 3.981 19 H 0.007 0.993 20 C -0.574 4.574 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.554 5.554 24 Si 0.785 3.215 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.188 1.188 28 C 0.000 4.000 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.243 0.757 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.254 0.746 45 H 0.173 0.827 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.117 0.883 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.071 0.929 52 H 0.062 0.938 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.277 -4.643 -24.209 26.707 hybrid contribution -0.880 0.654 0.645 1.272 sum 9.397 -3.989 -23.564 25.680 Atomic orbital electron populations 1.21843 0.94574 1.01744 1.01551 1.20577 0.96095 0.96120 0.93685 1.21837 1.00879 0.95325 1.01570 1.22247 0.97584 0.94689 0.84852 1.86435 1.77988 1.58227 1.17160 1.21434 1.01565 0.99332 0.91428 1.21876 1.02082 1.00464 0.92215 1.21711 1.00106 0.96653 0.82135 1.45873 1.51547 1.31932 1.04523 1.19918 0.80708 0.84329 0.84953 1.90272 1.38303 1.26645 1.84720 1.20537 0.82844 0.84320 0.85633 1.90725 1.36100 1.30479 1.86653 1.48481 1.36332 1.40628 1.05230 1.23325 0.88086 0.89058 1.06648 1.21819 1.01158 0.97524 0.95315 1.21559 0.97788 0.98293 0.96776 1.18995 0.92945 0.92309 0.93842 0.99287 1.21490 1.16078 1.26461 0.93332 0.91902 1.25896 0.96539 0.96804 0.99684 1.70057 1.23785 1.34047 1.27526 0.85520 0.77203 0.78830 0.79900 1.19969 1.21218 1.18849 1.22028 0.97038 0.97984 0.82969 0.92377 0.93278 0.92623 0.92385 0.93319 0.92306 0.92748 0.92941 0.75730 0.90627 0.90288 0.90161 0.90585 0.90837 0.90170 0.74598 0.82739 0.91103 0.93568 0.88337 0.92823 0.92410 0.92947 0.93767 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.98 71.98 0.57 -1.33 16 2 C -0.06 -0.75 0.63 -52.18 -0.03 -0.78 16 3 C -0.14 -1.79 7.98 71.98 0.57 -1.21 16 4 C 0.08 0.83 5.91 71.98 0.43 1.26 16 5 O -0.59 -7.01 12.31 -148.98 -1.83 -8.84 16 6 C -0.10 -0.96 4.27 30.59 0.13 -0.83 16 7 C -0.13 -1.56 4.62 30.59 0.14 -1.42 16 8 C 0.12 1.93 5.67 86.38 0.49 2.42 16 9 N -0.69 -16.46 5.55 -464.40 -2.58 -19.03 16 10 C 0.52 16.65 7.78 87.27 0.68 17.33 16 11 O -0.52 -16.84 13.10 -3.27 -0.04 -16.88 16 12 C 0.48 19.99 7.74 87.27 0.68 20.66 16 13 O -0.56 -26.53 15.94 -3.23 -0.05 -26.58 16 14 N -0.58 -24.56 2.97 -819.64 -2.43 -26.99 16 15 C 0.05 1.69 6.27 86.36 0.54 2.23 16 16 C -0.12 -4.11 6.08 30.67 0.19 -3.93 16 17 C -0.11 -4.35 5.10 30.62 0.16 -4.20 16 18 C 0.04 1.98 2.26 -11.31 -0.03 1.95 16 19 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 20 C -0.54 -29.68 8.56 25.60 0.22 -29.46 16 21 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 22 C 0.01 0.57 5.30 84.65 0.45 1.02 16 23 N -0.92 -55.04 11.41 21.45 0.24 -54.80 16 24 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 27 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 28 C 0.12 6.16 5.41 86.51 0.47 6.63 16 29 H 0.06 0.79 6.43 -2.39 -0.02 0.77 16 30 H 0.05 0.79 7.68 -2.39 -0.02 0.77 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.76 7.68 -2.39 -0.02 0.74 16 34 H 0.06 0.75 6.43 -2.38 -0.02 0.73 16 35 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.39 1.34 9.12 -74.06 -0.68 0.67 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.08 0.94 6.43 -2.39 -0.02 0.93 16 41 H 0.08 0.97 6.43 -2.39 -0.02 0.96 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.42 9.61 7.96 -92.71 -0.74 8.87 16 45 H 0.16 5.07 3.78 -78.75 -0.30 4.77 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 52 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.08 4.93 5.20 -2.39 -0.01 4.92 16 Total: -1.00 -71.60 409.02 0.20 -71.39 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.79 Total: 25.21 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.65 Total: 10.36 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -4.76 Total: -100.83 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -1.93 Total: -52.31 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -71.60 0.20 -71.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330839018.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.873 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds