Wall clock time and date at job start Sat Apr 11 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47356 * 2 1 4 4 O 1.42901 * 109.47172 * 64.97785 * 3 2 1 5 5 C 1.53001 * 109.47212 * 184.97662 * 3 2 1 6 6 C 1.53001 * 109.47140 * 304.99846 * 5 3 2 7 7 C 1.53001 * 109.47292 * 304.97605 * 3 2 1 8 8 N 1.46496 * 109.47168 * 182.31586 * 7 3 2 9 9 C 1.46505 * 119.99604 * 275.58228 * 8 7 3 10 10 C 1.34776 * 120.00088 * 95.58859 * 8 7 3 11 11 O 1.21343 * 119.99834 * 5.21054 * 10 8 7 12 12 C 1.49448 * 119.99817 * 185.22039 * 10 8 7 13 13 O 1.21353 * 120.00402 * 353.21181 * 12 10 8 14 14 N 1.34780 * 120.00133 * 172.93917 * 12 10 8 15 15 C 1.46926 * 120.62753 * 352.91042 * 14 12 10 16 16 C 1.53191 * 108.77487 * 233.58951 * 15 14 12 17 17 C 1.53038 * 109.31099 * 305.36440 * 16 15 14 18 18 C 1.53036 * 109.53834 * 61.37034 * 17 16 15 19 19 H 1.08998 * 109.50212 * 58.58685 * 18 17 16 20 20 C 1.50700 * 109.49818 * 178.68369 * 18 17 16 21 21 H 1.07998 * 119.99920 * 359.97438 * 20 18 17 22 22 C 1.37876 * 119.99968 * 179.97438 * 20 18 17 23 23 N 1.31515 * 120.00393 * 0.02562 * 22 20 18 24 24 Si 1.86803 * 120.00034 * 179.97438 * 22 20 18 25 25 H 1.48509 * 109.47029 * 90.00145 * 24 22 20 26 26 H 1.48494 * 109.47241 * 210.00154 * 24 22 20 27 27 H 1.48503 * 109.47025 * 330.00835 * 24 22 20 28 28 C 1.46918 * 120.63148 * 172.63681 * 14 12 10 29 29 H 1.08997 * 109.46932 * 305.51472 * 1 2 3 30 30 H 1.09003 * 109.46503 * 65.51117 * 1 2 3 31 31 H 1.08994 * 109.47101 * 185.51379 * 1 2 3 32 32 H 1.08997 * 109.47590 * 239.99845 * 2 1 3 33 33 H 1.09008 * 109.47004 * 119.99608 * 2 1 3 34 34 H 0.96699 * 114.00104 * 180.02562 * 4 3 2 35 35 H 1.08996 * 109.47278 * 64.99813 * 5 3 2 36 36 H 1.09000 * 109.47119 * 185.00082 * 5 3 2 37 37 H 1.08996 * 109.47264 * 180.02562 * 6 5 3 38 38 H 1.09001 * 109.47104 * 300.00618 * 6 5 3 39 39 H 1.09000 * 109.46922 * 60.00116 * 6 5 3 40 40 H 1.09001 * 109.46841 * 62.30957 * 7 3 2 41 41 H 1.09007 * 109.46864 * 302.31622 * 7 3 2 42 42 H 1.09001 * 109.46775 * 234.87029 * 9 8 7 43 43 H 1.08998 * 109.47552 * 354.86786 * 9 8 7 44 44 H 1.08995 * 109.47026 * 114.87325 * 9 8 7 45 45 H 1.09008 * 109.58763 * 353.37662 * 15 14 12 46 46 H 1.08999 * 109.58967 * 113.65807 * 15 14 12 47 47 H 1.09004 * 109.50154 * 65.31810 * 16 15 14 48 48 H 1.09007 * 109.49573 * 185.41541 * 16 15 14 49 49 H 1.09007 * 109.45812 * 181.39131 * 17 16 15 50 50 H 1.09000 * 109.46165 * 301.35994 * 17 16 15 51 51 H 0.96989 * 119.99967 * 179.97438 * 23 22 20 52 52 H 1.09002 * 109.58428 * 246.19577 * 28 14 12 53 53 H 1.09004 * 109.58902 * 6.61874 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.6616 2.0816 1.2208 5 6 3.5649 1.4443 -0.1251 6 6 4.1689 0.5837 0.9864 7 6 1.4305 2.1990 -1.1820 8 7 1.9615 3.5640 -1.2142 9 6 1.3454 4.6091 -0.3930 10 6 3.0165 3.8583 -1.9995 11 8 3.4672 3.0181 -2.7501 12 6 3.6315 5.2193 -1.9456 13 8 3.1086 6.0959 -1.2893 14 7 4.7699 5.4717 -2.6215 15 6 5.5014 4.3855 -3.2877 16 6 6.9563 4.4043 -2.8083 17 6 7.5481 5.7962 -3.0418 18 6 6.7599 6.8296 -2.2337 19 1 6.7976 6.5699 -1.1757 20 6 7.3634 8.1951 -2.4388 21 1 8.2234 8.3145 -3.0810 22 6 6.8174 9.2921 -1.8067 23 7 5.7704 9.1467 -1.0242 24 14 7.5659 10.9848 -2.0604 25 1 6.9178 11.6433 -3.2230 26 1 7.3526 11.8078 -0.8430 27 1 9.0222 10.8486 -2.3171 28 6 5.2998 6.8391 -2.7112 29 1 -0.3633 0.5970 0.8365 30 1 -0.3632 0.4260 -0.9353 31 1 -0.3633 -1.0229 0.0987 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.9522 3.0013 1.2899 35 1 3.8504 1.0375 -1.0952 36 1 3.9356 2.4654 -0.0360 37 1 5.2552 0.5853 0.8976 38 1 3.8834 0.9904 1.9566 39 1 3.7982 -0.4375 0.8973 40 1 0.3467 2.2332 -1.0714 41 1 1.6851 1.6880 -2.1106 42 1 1.0615 5.4492 -1.0269 43 1 0.4587 4.2093 0.0989 44 1 2.0576 4.9466 0.3599 45 1 5.0454 3.4284 -3.0339 46 1 5.4683 4.5310 -4.3674 47 1 6.9921 4.1674 -1.7449 48 1 7.5326 3.6658 -3.3657 49 1 8.5908 5.8054 -2.7242 50 1 7.4891 6.0427 -4.1019 51 1 5.3866 9.9184 -0.5793 52 1 5.2527 7.1821 -3.7448 53 1 4.7107 7.5016 -2.0770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331654574.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:04 Heat of formation + Delta-G solvation = -131.158472 kcal Electronic energy + Delta-G solvation = -32619.898396 eV Core-core repulsion = 28491.248680 eV Total energy + Delta-G solvation = -4128.649717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.21551 -40.50915 -39.16250 -38.58201 -36.38491 -35.12524 -34.60107 -33.45315 -32.75607 -31.58711 -29.87915 -28.20477 -27.24499 -26.56661 -25.67828 -23.87550 -23.64569 -23.26569 -21.30892 -20.81549 -20.12647 -18.61722 -18.24912 -17.85643 -17.80720 -17.14961 -16.95723 -16.48889 -16.27769 -15.91870 -15.49488 -15.47861 -15.03482 -14.79768 -14.66704 -14.61745 -14.43722 -14.35247 -14.10121 -14.04097 -13.85026 -13.48401 -13.32821 -13.12832 -12.98293 -12.87311 -12.82535 -12.68495 -12.46410 -12.29801 -12.28985 -12.13671 -11.98474 -11.80656 -11.72348 -11.55700 -11.37177 -11.09029 -10.99679 -10.97419 -10.55441 -10.05479 -9.77949 -9.47797 -8.11717 -6.28146 0.35984 1.28447 1.41586 1.42221 1.52465 2.12992 2.38327 2.44570 3.12506 3.17713 3.24302 3.71365 3.76786 3.84650 4.10166 4.15805 4.19965 4.26486 4.33256 4.34834 4.52040 4.52897 4.58312 4.59419 4.63128 4.67427 4.71521 4.79649 4.83372 4.88300 4.93047 4.99038 5.05454 5.07569 5.15580 5.18308 5.21602 5.22006 5.26337 5.29225 5.34879 5.39116 5.50047 5.52645 5.57239 5.83936 5.85891 5.93842 6.27944 6.39339 6.64550 6.67075 6.82933 7.00942 7.41460 8.91948 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.003066 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.934722 B = 9130.590886 C = 9646.997597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C 0.124 3.876 4 O -0.561 6.561 5 C -0.145 4.145 6 C -0.144 4.144 7 C 0.082 3.918 8 N -0.581 5.581 9 C 0.083 3.917 10 C 0.516 3.484 11 O -0.518 6.518 12 C 0.481 3.519 13 O -0.545 6.545 14 N -0.577 5.577 15 C 0.069 3.931 16 C -0.124 4.124 17 C -0.107 4.107 18 C 0.042 3.958 19 H -0.011 1.011 20 C -0.537 4.537 21 H 0.061 0.939 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.957 3.043 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.266 1.266 28 C 0.123 3.877 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.376 0.624 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.059 0.941 45 H 0.141 0.859 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.099 0.901 49 H 0.052 0.948 50 H 0.056 0.944 51 H 0.261 0.739 52 H 0.042 0.958 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 -19.475 0.362 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C 0.082 3.918 4 O -0.368 6.368 5 C -0.183 4.183 6 C -0.201 4.201 7 C -0.039 4.039 8 N -0.313 5.313 9 C -0.059 4.059 10 C 0.300 3.700 11 O -0.396 6.396 12 C 0.264 3.736 13 O -0.424 6.424 14 N -0.309 5.309 15 C -0.052 4.052 16 C -0.162 4.162 17 C -0.144 4.144 18 C 0.023 3.977 19 H 0.007 0.993 20 C -0.575 4.575 21 H 0.079 0.921 22 C -0.187 4.187 23 N -0.550 5.550 24 Si 0.782 3.218 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.190 1.190 28 C 0.001 3.999 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.224 0.776 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.077 0.923 45 H 0.158 0.842 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.117 0.883 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.070 0.930 52 H 0.061 0.939 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.654 -19.931 0.544 22.606 hybrid contribution 0.861 2.288 -0.027 2.445 sum -9.792 -17.643 0.517 20.185 Atomic orbital electron populations 1.21788 0.94499 1.02396 1.02189 1.21539 0.97222 0.92000 1.03579 1.21700 0.92487 0.94011 0.83570 1.86493 1.80754 1.30528 1.38999 1.22143 0.96004 0.99603 1.00580 1.21713 1.00109 1.00270 0.98026 1.22711 1.00226 0.80244 1.00720 1.47777 1.29561 1.11818 1.42143 1.22116 0.98782 0.89922 0.95065 1.20013 0.81524 0.87358 0.81113 1.90401 1.60425 1.49737 1.39047 1.20518 0.82614 0.89375 0.81120 1.90749 1.62653 1.48287 1.40719 1.48443 1.22149 1.10815 1.49520 1.22948 0.92622 0.92516 0.97090 1.21906 0.95674 0.97684 1.00947 1.21554 0.98852 0.94308 0.99735 1.18943 0.91011 0.94142 0.93651 0.99281 1.21477 1.14333 0.92903 1.28800 0.92101 1.25850 0.95315 1.02981 0.94536 1.70053 1.23139 1.31245 1.30555 0.85571 0.79102 0.79582 0.77500 1.20014 1.21188 1.19013 1.22003 0.98067 0.80333 0.99470 0.92683 0.91982 0.91677 0.89405 0.90612 0.77556 0.90763 0.94758 0.93169 0.92991 0.90899 0.86910 0.88283 0.91838 0.87341 0.92282 0.84208 0.91153 0.93474 0.88308 0.92874 0.92490 0.92975 0.93928 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.11 -1.46 4.57 30.59 0.14 -1.32 16 3 C 0.12 2.21 0.58 -10.79 -0.01 2.20 16 4 O -0.56 -10.94 11.79 -148.98 -1.76 -12.70 16 5 C -0.15 -3.12 4.10 30.60 0.13 -2.99 16 6 C -0.14 -2.75 9.32 71.98 0.67 -2.08 16 7 C 0.08 1.49 4.20 86.38 0.36 1.85 16 8 N -0.58 -14.05 2.41 -848.35 -2.04 -16.10 16 9 C 0.08 1.91 7.31 127.77 0.93 2.84 16 10 C 0.52 16.17 6.12 87.27 0.53 16.71 16 11 O -0.52 -16.02 11.82 -3.23 -0.04 -16.06 16 12 C 0.48 19.30 7.66 87.27 0.67 19.97 16 13 O -0.55 -24.69 12.70 -3.26 -0.04 -24.73 16 14 N -0.58 -24.07 2.97 -819.63 -2.43 -26.50 16 15 C 0.07 2.35 6.02 86.36 0.52 2.87 16 16 C -0.12 -4.13 6.08 30.67 0.19 -3.95 16 17 C -0.11 -4.31 5.10 30.62 0.16 -4.15 16 18 C 0.04 2.12 2.26 -11.32 -0.03 2.09 16 19 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 20 C -0.54 -29.45 8.56 25.60 0.22 -29.23 16 21 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 22 C 0.01 0.72 5.30 84.65 0.45 1.17 16 23 N -0.91 -53.93 11.41 21.45 0.24 -53.69 16 24 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 C 0.12 6.10 5.44 86.51 0.47 6.57 16 29 H 0.05 0.78 7.68 -2.39 -0.02 0.76 16 30 H 0.06 0.64 6.73 -2.39 -0.02 0.62 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.09 6.65 -2.38 -0.02 1.07 16 34 H 0.38 7.18 6.68 -74.06 -0.49 6.68 16 35 H 0.07 1.64 7.78 -2.39 -0.02 1.62 16 36 H 0.03 0.91 6.92 -2.39 -0.02 0.90 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 1.06 7.82 -2.39 -0.02 1.04 16 39 H 0.07 1.14 6.46 -2.39 -0.02 1.12 16 40 H 0.11 1.59 6.47 -2.39 -0.02 1.57 16 41 H 0.10 1.85 7.20 -2.38 -0.02 1.84 16 42 H 0.06 1.73 7.05 -2.39 -0.02 1.71 16 43 H 0.11 1.68 7.71 -2.39 -0.02 1.66 16 44 H 0.06 1.55 7.13 -2.39 -0.02 1.54 16 45 H 0.14 4.50 4.23 -54.65 -0.23 4.27 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 49 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 50 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.26 14.84 8.31 -92.72 -0.77 14.07 16 52 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 53 H 0.09 4.97 5.15 -2.39 -0.01 4.95 16 Total: -1.00 -66.25 394.89 2.22 -64.03 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.19 Total: 28.56 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.07 Total: 11.42 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -4.23 Total: -96.29 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -1.84 Total: -53.49 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -66.25 2.22 -64.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331654574.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.129 kcal (2) G-P(sol) polarization free energy of solvation -66.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds