Wall clock time and date at job start Sat Apr 11 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47343 * 2 1 4 4 C 1.52999 * 109.47343 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46832 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47444 * 304.99838 * 5 4 3 7 7 C 1.53008 * 109.46704 * 185.00063 * 5 4 3 8 8 C 1.53000 * 109.47043 * 175.00218 * 7 5 4 9 9 C 1.52999 * 109.47126 * 179.97438 * 8 7 5 10 10 N 1.46493 * 109.46995 * 65.00535 * 5 4 3 11 11 C 1.34776 * 119.99760 * 204.99833 * 10 5 4 12 12 O 1.21349 * 120.00174 * 359.97438 * 11 10 5 13 13 C 1.49451 * 120.00195 * 179.97438 * 11 10 5 14 14 O 1.21349 * 119.99631 * 0.02562 * 13 11 10 15 15 N 1.34776 * 120.00195 * 180.02562 * 13 11 10 16 16 C 1.47422 * 125.64774 * 359.68774 * 15 13 11 17 17 C 1.55135 * 104.72269 * 155.81967 * 16 15 13 18 18 C 1.55161 * 101.48236 * 37.29888 * 17 16 15 19 19 O 1.42899 * 110.71944 * 82.69629 * 18 17 16 20 20 C 1.50697 * 110.86809 * 205.90032 * 18 17 16 21 21 H 1.08002 * 120.00139 * 118.67835 * 20 18 17 22 22 C 1.37884 * 119.99941 * 298.66681 * 20 18 17 23 23 N 1.31519 * 119.99683 * 183.38792 * 22 20 18 24 24 Si 1.86792 * 120.00031 * 3.39422 * 22 20 18 25 25 H 1.48502 * 109.47307 * 84.83064 * 24 22 20 26 26 H 1.48503 * 109.47077 * 204.83647 * 24 22 20 27 27 H 1.48504 * 109.47046 * 324.83416 * 24 22 20 28 28 C 1.47019 * 125.64838 * 180.02562 * 15 13 11 29 29 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47275 * 299.99779 * 1 2 3 31 31 H 1.08999 * 109.47265 * 60.00185 * 1 2 3 32 32 H 1.09005 * 109.47018 * 239.99791 * 2 1 3 33 33 H 1.09002 * 109.47033 * 120.00293 * 2 1 3 34 34 H 1.08997 * 109.46877 * 59.99421 * 3 2 1 35 35 H 1.08999 * 109.46789 * 300.00106 * 3 2 1 36 36 H 1.09005 * 109.47018 * 59.99791 * 4 3 2 37 37 H 1.09002 * 109.47033 * 300.00293 * 4 3 2 38 38 H 1.09004 * 109.46613 * 295.00109 * 7 5 4 39 39 H 1.08997 * 109.47243 * 55.00068 * 7 5 4 40 40 H 1.09003 * 109.46761 * 299.99957 * 8 7 5 41 41 H 1.09005 * 109.47038 * 59.99528 * 8 7 5 42 42 H 1.08994 * 109.47232 * 179.97438 * 9 8 7 43 43 H 1.08995 * 109.47168 * 300.00340 * 9 8 7 44 44 H 1.09002 * 109.46766 * 60.00295 * 9 8 7 45 45 H 0.96995 * 120.00576 * 24.99397 * 10 5 4 46 46 H 1.08997 * 110.37147 * 274.74757 * 16 15 13 47 47 H 1.09002 * 110.36818 * 37.07835 * 16 15 13 48 48 H 1.08998 * 111.19199 * 279.19982 * 17 16 15 49 49 H 1.08993 * 110.93813 * 155.28996 * 17 16 15 50 50 H 0.96704 * 113.99559 * 185.02386 * 19 18 17 51 51 H 0.97005 * 119.99556 * 180.02562 * 23 22 20 52 52 H 1.08995 * 109.88449 * 300.43422 * 28 15 13 53 53 H 1.09002 * 109.88503 * 61.45195 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4236 -0.8423 7 6 5.6049 2.8867 -0.1251 8 6 6.1046 4.3273 -0.2511 9 6 7.6296 4.3291 -0.3756 10 7 3.6920 3.5406 1.2513 11 6 3.5651 4.8816 1.2982 12 8 3.7727 5.5459 0.3042 13 6 3.1687 5.5505 2.5745 14 8 2.9615 4.8862 3.5687 15 7 3.0413 6.8914 2.6213 16 6 3.2679 7.8158 1.4955 17 6 2.4273 9.0727 1.8421 18 6 2.6185 9.1578 3.3796 19 8 3.8484 9.8105 3.7008 20 6 1.4563 9.8662 4.0266 21 1 0.8426 9.3484 4.7489 22 6 1.1766 11.1754 3.6966 23 7 0.2043 11.8147 4.3095 24 14 2.1784 12.0409 2.3789 25 1 1.6126 11.7286 1.0418 26 1 2.1324 13.5078 2.6056 27 1 3.5869 11.5743 2.4415 28 6 2.6601 7.6750 3.8054 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9330 0.9287 0.8908 38 1 6.0426 2.4264 0.7608 39 1 5.8975 2.3219 -1.0102 40 1 5.6669 4.7875 -1.1369 41 1 5.8120 4.8921 0.6341 42 1 7.9855 5.3553 -0.4658 43 1 8.0669 3.8689 0.5104 44 1 7.9225 3.7642 -1.2606 45 1 3.5263 3.0097 2.0459 46 1 4.3248 8.0719 1.4217 47 1 2.9184 7.3715 0.5636 48 1 1.3778 8.9277 1.5864 49 1 2.8288 9.9579 1.3490 50 1 4.0527 9.8214 4.6459 51 1 0.0073 12.7356 4.0771 52 1 1.6766 7.3625 4.1560 53 1 3.3972 7.5345 4.5960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332245298.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:06 Heat of formation + Delta-G solvation = -155.719512 kcal Electronic energy + Delta-G solvation = -31304.019651 eV Core-core repulsion = 27174.304887 eV Total energy + Delta-G solvation = -4129.714763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99135 -40.44905 -39.11440 -38.08173 -36.31129 -35.81248 -34.53234 -34.46624 -32.04038 -31.96043 -30.14619 -29.03007 -27.82862 -25.80128 -25.00680 -23.72311 -22.52647 -21.80363 -21.64057 -21.53973 -21.01060 -19.50536 -18.75661 -18.17555 -17.45990 -17.16334 -16.94142 -16.58208 -16.24672 -16.11910 -15.68460 -15.32648 -15.08640 -15.04550 -14.79709 -14.62753 -14.40683 -14.18585 -14.12900 -14.02242 -13.86986 -13.49512 -13.41289 -13.19462 -12.97499 -12.91875 -12.66002 -12.47300 -12.39995 -12.38508 -12.18731 -12.07041 -11.94061 -11.86926 -11.82959 -11.48504 -11.38931 -11.26626 -10.98433 -10.82580 -10.54303 -10.38641 -10.14891 -9.81664 -8.37908 -6.53477 0.34870 1.24884 1.37813 1.45536 1.67450 2.12874 2.38621 2.46025 2.98012 3.28681 3.52399 3.56891 3.73619 3.95613 3.97680 4.03135 4.15135 4.20519 4.21866 4.27469 4.34202 4.39437 4.47593 4.58279 4.61785 4.69568 4.73189 4.78847 4.85121 4.87319 4.91345 4.94336 4.96483 5.00605 5.03397 5.06893 5.08893 5.19344 5.25556 5.28387 5.32754 5.35268 5.39303 5.46809 5.49833 5.51603 5.54868 6.03559 6.05096 6.28687 6.57081 6.64140 6.95261 7.10907 7.28112 8.76025 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.002903 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.419658 B = 9644.200957 C =10870.170440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C -0.124 4.124 4 C -0.117 4.117 5 C 0.142 3.858 6 H 0.081 0.919 7 C -0.124 4.124 8 C -0.121 4.121 9 C -0.149 4.149 10 N -0.681 5.681 11 C 0.517 3.483 12 O -0.520 6.520 13 C 0.506 3.494 14 O -0.555 6.555 15 N -0.582 5.582 16 C 0.114 3.886 17 C -0.132 4.132 18 C 0.218 3.782 19 O -0.572 6.572 20 C -0.551 4.551 21 H 0.041 0.959 22 C 0.040 3.960 23 N -0.934 5.934 24 Si 0.934 3.066 25 H -0.269 1.269 26 H -0.307 1.307 27 H -0.214 1.214 28 C 0.100 3.900 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.415 0.585 46 H 0.078 0.922 47 H 0.105 0.895 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.378 0.622 51 H 0.269 0.731 52 H 0.061 0.939 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -23.464 -12.650 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C -0.161 4.161 4 C -0.155 4.155 5 C 0.039 3.961 6 H 0.099 0.901 7 C -0.162 4.162 8 C -0.158 4.158 9 C -0.207 4.207 10 N -0.335 5.335 11 C 0.297 3.703 12 O -0.397 6.397 13 C 0.290 3.710 14 O -0.435 6.435 15 N -0.314 5.314 16 C -0.007 4.007 17 C -0.170 4.170 18 C 0.177 3.823 19 O -0.380 6.380 20 C -0.588 4.588 21 H 0.059 0.941 22 C -0.161 4.161 23 N -0.573 5.573 24 Si 0.759 3.241 25 H -0.195 1.195 26 H -0.235 1.235 27 H -0.136 1.136 28 C -0.022 4.022 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.252 0.748 46 H 0.096 0.904 47 H 0.123 0.877 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.227 0.773 51 H 0.078 0.922 52 H 0.079 0.921 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.754 -23.224 -13.483 28.927 hybrid contribution -0.522 0.852 1.122 1.502 sum 10.231 -22.372 -12.361 27.532 Atomic orbital electron populations 1.21812 0.96471 1.01827 1.01409 1.21502 0.95457 0.96145 1.02655 1.21641 0.95522 0.97357 1.01617 1.21883 0.95295 0.93415 1.04881 1.21390 0.95377 0.94092 0.85246 0.90093 1.22052 0.93690 0.96812 1.03694 1.21553 0.96019 0.97058 1.01205 1.21766 0.95411 1.01408 1.02065 1.45853 1.67170 1.04950 1.15481 1.19614 0.78840 0.84261 0.87560 1.90719 1.48973 1.64173 1.35830 1.20325 0.79390 0.81594 0.89707 1.90709 1.51802 1.63687 1.37294 1.48447 1.63923 1.05004 1.14012 1.22649 1.00302 0.88267 0.89528 1.23161 1.00549 0.97716 0.95603 1.19804 0.83148 0.86748 0.92561 1.86463 1.41216 1.80127 1.30198 1.21384 1.13466 0.98047 1.25934 0.94060 1.25725 0.95000 0.97773 0.97626 1.70053 1.31926 1.12197 1.43074 0.86161 0.83163 0.75732 0.79032 1.19523 1.23501 1.13635 1.22695 0.99888 0.92207 0.87435 0.92092 0.93645 0.93031 0.90937 0.91556 0.93291 0.92474 0.87985 0.89979 0.91008 0.88565 0.92627 0.94567 0.93674 0.92774 0.91491 0.74818 0.90399 0.87727 0.90048 0.90285 0.77319 0.92230 0.92090 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.31 5.93 30.59 0.18 -1.13 16 3 C -0.12 -1.60 5.10 30.59 0.16 -1.44 16 4 C -0.12 -1.15 4.75 30.59 0.15 -1.00 16 5 C 0.14 2.14 2.26 45.00 0.10 2.24 16 6 H 0.08 1.48 7.58 -2.39 -0.02 1.46 16 7 C -0.12 -1.71 4.89 30.60 0.15 -1.56 16 8 C -0.12 -2.37 4.54 30.59 0.14 -2.24 16 9 C -0.15 -2.48 9.91 71.98 0.71 -1.77 16 10 N -0.68 -13.87 4.48 -443.87 -1.99 -15.85 16 11 C 0.52 14.43 6.43 87.27 0.56 14.99 16 12 O -0.52 -15.55 10.91 -3.24 -0.04 -15.58 16 13 C 0.51 17.34 7.91 87.27 0.69 18.03 16 14 O -0.56 -20.83 16.80 -3.24 -0.05 -20.88 16 15 N -0.58 -21.34 3.32 -812.93 -2.70 -24.05 16 16 C 0.11 3.98 6.07 86.93 0.53 4.50 16 17 C -0.13 -5.34 4.83 32.07 0.15 -5.18 16 18 C 0.22 9.58 0.67 -10.35 -0.01 9.57 16 19 O -0.57 -23.74 10.44 -148.98 -1.56 -25.30 16 20 C -0.55 -29.72 8.82 25.60 0.23 -29.49 16 21 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 22 C 0.04 2.21 5.47 84.66 0.46 2.67 16 23 N -0.93 -56.50 13.96 21.45 0.30 -56.20 16 24 Si 0.93 43.39 23.89 68.60 1.64 45.03 16 25 H -0.27 -11.91 7.08 99.48 0.70 -11.21 16 26 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 27 H -0.21 -9.41 5.50 99.48 0.55 -8.87 16 28 C 0.10 4.07 6.21 86.73 0.54 4.61 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.80 7.75 -2.39 -0.02 0.78 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 1.23 7.85 -2.39 -0.02 1.21 16 41 H 0.04 0.91 5.64 -2.38 -0.01 0.89 16 42 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.41 7.81 8.07 -92.71 -0.75 7.07 16 46 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 47 H 0.10 3.42 6.14 -2.39 -0.01 3.41 16 48 H 0.08 3.37 8.04 -2.39 -0.02 3.35 16 49 H 0.08 3.15 5.00 -2.39 -0.01 3.14 16 50 H 0.38 13.56 9.08 -74.05 -0.67 12.89 16 51 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 52 H 0.06 2.68 7.66 -2.39 -0.02 2.66 16 53 H 0.07 2.77 8.06 -2.39 -0.02 2.76 16 Total: -1.00 -66.78 408.19 0.38 -66.40 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -0.68 Total: 34.91 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 5.45 Total: 11.52 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -4.39 Total: -96.10 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -1.65 Total: -61.76 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.64 Total: 45.03 kcal Total: -66.78 0.38 -66.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332245298.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.318 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds