Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 C 1.53003 * 109.47158 * 305.78759 * 3 2 1 5 5 C 1.52999 * 109.46994 * 295.28159 * 4 3 2 6 6 C 1.53000 * 109.47016 * 65.78277 * 3 2 1 7 7 N 1.46508 * 109.47163 * 65.00395 * 6 3 2 8 8 C 1.46500 * 119.99930 * 89.99604 * 7 6 3 9 9 C 1.52998 * 109.46972 * 94.16201 * 8 7 6 10 10 C 1.34778 * 119.99587 * 270.00168 * 7 6 3 11 11 O 1.21348 * 120.00148 * 5.19152 * 10 7 6 12 12 C 1.49448 * 119.99475 * 185.19740 * 10 7 6 13 13 O 1.21349 * 120.00201 * 5.61463 * 12 10 7 14 14 N 1.34778 * 119.99926 * 185.61390 * 12 10 7 15 15 C 1.47027 * 125.64782 * 359.68524 * 14 12 10 16 16 C 1.54331 * 107.26436 * 178.85139 * 15 14 12 17 17 C 1.55152 * 103.02332 * 338.14394 * 16 15 14 18 18 O 1.42902 * 111.00259 * 277.23311 * 17 16 15 19 19 C 1.50696 * 111.03724 * 153.39417 * 17 16 15 20 20 H 1.07997 * 120.00450 * 273.71754 * 19 17 16 21 21 C 1.37885 * 119.99788 * 93.71528 * 19 17 16 22 22 N 1.31517 * 119.99773 * 175.02452 * 21 19 17 23 23 Si 1.86798 * 120.00052 * 355.02706 * 21 19 17 24 24 H 1.48503 * 109.47055 * 88.13468 * 23 21 19 25 25 H 1.48498 * 109.47171 * 208.13311 * 23 21 19 26 26 H 1.48500 * 109.47310 * 328.13650 * 23 21 19 27 27 C 1.47422 * 125.65085 * 180.02562 * 14 12 10 28 28 H 1.09003 * 109.47377 * 186.41178 * 1 2 3 29 29 H 1.08998 * 109.47231 * 306.41812 * 1 2 3 30 30 H 1.08999 * 109.46700 * 66.41551 * 1 2 3 31 31 H 1.08997 * 109.47250 * 239.99796 * 2 1 3 32 32 H 1.09002 * 109.46331 * 119.99620 * 2 1 3 33 33 H 1.08994 * 109.46942 * 185.78448 * 3 2 1 34 34 H 1.09004 * 109.46965 * 55.27343 * 4 3 2 35 35 H 1.08990 * 109.47181 * 175.28036 * 4 3 2 36 36 H 1.09002 * 109.47580 * 185.24319 * 5 4 3 37 37 H 1.09010 * 109.46903 * 305.24515 * 5 4 3 38 38 H 1.08998 * 109.47440 * 65.23941 * 5 4 3 39 39 H 1.08996 * 109.47864 * 305.00060 * 6 3 2 40 40 H 1.09005 * 109.47224 * 185.00018 * 6 3 2 41 41 H 1.08999 * 109.46820 * 214.16569 * 8 7 6 42 42 H 1.09003 * 109.47202 * 334.15843 * 8 7 6 43 43 H 1.08998 * 109.47128 * 299.99820 * 9 8 7 44 44 H 1.09004 * 109.46757 * 60.00068 * 9 8 7 45 45 H 1.09000 * 109.47192 * 179.97438 * 9 8 7 46 46 H 1.08993 * 109.88367 * 298.40298 * 15 14 12 47 47 H 1.09001 * 109.87860 * 59.56192 * 15 14 12 48 48 H 1.09004 * 110.84703 * 219.67387 * 16 15 14 49 49 H 1.09002 * 110.51364 * 96.46151 * 16 15 14 50 50 H 0.96702 * 113.99872 * 177.74731 * 18 17 16 51 51 H 0.96998 * 119.99909 * 180.02562 * 22 21 19 52 52 H 1.08999 * 110.36096 * 322.92279 * 27 14 12 53 53 H 1.08997 * 110.37107 * 85.14027 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4148 2.2045 -1.1702 5 6 1.8971 1.5982 -2.4895 6 6 1.6522 2.1205 1.3156 7 7 2.3462 1.4641 2.4264 8 6 3.6638 1.9426 2.8521 9 6 3.4976 2.9395 4.0008 10 6 1.7724 0.4200 3.0566 11 8 0.7259 -0.0364 2.6452 12 6 2.4249 -0.1755 4.2620 13 8 3.4154 0.3427 4.7341 14 7 1.9131 -1.2881 4.8249 15 6 0.7197 -2.0114 4.3619 16 6 0.5342 -3.2303 5.2901 17 6 1.9531 -3.4380 5.8824 18 8 2.7779 -4.1852 4.9859 19 6 1.8837 -4.1057 7.2316 20 1 1.7491 -3.5103 8.1225 21 6 1.9920 -5.4768 7.3286 22 7 2.0299 -6.0514 8.5110 23 14 2.0851 -6.5183 5.7807 24 1 3.5018 -6.6457 5.3542 25 1 1.5282 -7.8668 6.0571 26 1 1.2993 -5.8702 4.7000 27 6 2.4531 -1.9773 6.0109 28 1 -0.3634 -1.0212 0.1148 29 1 -0.3633 0.6101 0.8269 30 1 -0.3633 0.4112 -0.9418 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 3.1251 1.4441 -0.1036 34 1 0.3287 2.1315 -1.1124 35 1 1.7117 3.2521 -1.1217 36 1 1.5270 2.1973 -3.3215 37 1 2.9870 1.5862 -2.5069 38 1 1.5211 0.5792 -2.5801 39 1 0.5751 2.0405 1.4620 40 1 1.9368 3.1722 1.2800 41 1 4.2658 1.0983 3.1879 42 1 4.1604 2.4327 2.0147 43 1 2.8955 3.7838 3.6650 44 1 3.0010 2.4493 4.8383 45 1 4.4779 3.2952 4.3179 46 1 -0.1535 -1.3618 4.4206 47 1 0.8654 -2.3481 3.3355 48 1 0.2213 -4.1064 4.7220 49 1 -0.1837 -3.0042 6.0786 50 1 3.6846 -4.3107 5.2978 51 1 2.1065 -7.0159 8.5793 52 1 3.5426 -1.9474 6.0037 53 1 2.0678 -1.5214 6.9229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332356600.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -131.183241 kcal Electronic energy + Delta-G solvation = -32439.435507 eV Core-core repulsion = 28310.784716 eV Total energy + Delta-G solvation = -4128.650791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10419 -40.49630 -39.17637 -38.24500 -36.97720 -36.03898 -34.46655 -32.08432 -32.06632 -31.51219 -30.10162 -29.52954 -27.72132 -26.07824 -24.97718 -24.28307 -24.02293 -22.59584 -21.58110 -20.33452 -19.74496 -19.45164 -18.43706 -18.08925 -17.39559 -17.25573 -16.98903 -16.68025 -16.40076 -16.27028 -15.61701 -15.42104 -15.27236 -14.81173 -14.62025 -14.55003 -14.31547 -14.11884 -14.00399 -13.92394 -13.50845 -13.44453 -13.34717 -13.24956 -12.99351 -12.87967 -12.74533 -12.71496 -12.36962 -12.34726 -12.26655 -12.05788 -12.02756 -11.97022 -11.75244 -11.47898 -11.27798 -11.25412 -11.23433 -10.66270 -10.43082 -10.30646 -9.82743 -9.56816 -8.35960 -6.49681 0.42118 1.28009 1.46688 1.54211 1.76032 2.16717 2.36724 2.42893 2.94473 3.16073 3.43807 3.82293 3.85541 3.88737 3.98047 4.02788 4.15139 4.24465 4.37493 4.38411 4.43718 4.46560 4.54560 4.61767 4.63457 4.65819 4.69590 4.77095 4.81908 4.84151 4.94114 4.96123 4.96680 5.02483 5.08865 5.13133 5.16611 5.18934 5.29198 5.33657 5.35410 5.38643 5.43720 5.48181 5.50515 5.57413 5.67354 6.01240 6.04625 6.28763 6.56285 6.64005 6.86920 7.00235 7.26976 8.76900 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.003224 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.933278 B = 8682.758904 C = 9699.450434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.151 4.151 6 C 0.114 3.886 7 N -0.576 5.576 8 C 0.103 3.897 9 C -0.153 4.153 10 C 0.507 3.493 11 O -0.516 6.516 12 C 0.503 3.497 13 O -0.537 6.537 14 N -0.583 5.583 15 C 0.125 3.875 16 C -0.122 4.122 17 C 0.218 3.782 18 O -0.558 6.558 19 C -0.546 4.546 20 H 0.050 0.950 21 C 0.026 3.974 22 N -0.933 5.933 23 Si 1.006 2.994 24 H -0.282 1.282 25 H -0.337 1.337 26 H -0.261 1.261 27 C 0.099 3.901 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.380 0.620 51 H 0.268 0.732 52 H 0.073 0.927 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 19.514 -20.269 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C -0.116 4.116 4 C -0.152 4.152 5 C -0.208 4.208 6 C -0.007 4.007 7 N -0.309 5.309 8 C -0.019 4.019 9 C -0.211 4.211 10 C 0.289 3.711 11 O -0.393 6.393 12 C 0.287 3.713 13 O -0.416 6.416 14 N -0.316 5.316 15 C 0.003 3.997 16 C -0.160 4.160 17 C 0.177 3.823 18 O -0.367 6.367 19 C -0.584 4.584 20 H 0.068 0.932 21 C -0.174 4.174 22 N -0.571 5.571 23 Si 0.840 3.160 24 H -0.209 1.209 25 H -0.270 1.270 26 H -0.186 1.186 27 C -0.023 4.023 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.230 0.770 51 H 0.077 0.923 52 H 0.091 0.909 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.048 19.503 -20.517 28.307 hybrid contribution 0.614 -1.114 0.652 1.429 sum 0.567 18.389 -19.864 27.075 Atomic orbital electron populations 1.21697 0.95452 1.00773 1.01288 1.21462 0.96774 0.96582 1.00151 1.21567 1.00543 0.94974 0.94481 1.21523 1.00927 0.99546 0.93170 1.21770 1.01168 1.00803 0.97095 1.21943 0.97912 0.96929 0.83905 1.47905 1.20272 1.30141 1.32619 1.21945 0.82460 0.99218 0.98253 1.22032 1.02690 0.98366 0.98054 1.19840 0.85501 0.81822 0.83933 1.90746 1.23108 1.60216 1.65190 1.20241 0.84696 0.80720 0.85631 1.90680 1.25891 1.60627 1.64371 1.48441 1.28994 1.24864 1.29282 1.22080 0.86789 0.92905 0.97955 1.22953 0.97189 0.97058 0.98817 1.20125 0.88435 0.86409 0.87335 1.86173 1.26420 1.74193 1.49953 1.21301 1.52302 0.92612 0.92201 0.93179 1.25841 0.92745 0.99396 0.99405 1.70063 1.49765 1.11359 1.25891 0.84744 0.78753 0.73658 0.78880 1.20880 1.27016 1.18642 1.22931 0.99217 0.93536 0.86664 0.95022 0.92291 0.92110 0.92631 0.94719 0.90870 0.91343 0.90429 0.91975 0.92791 0.93392 0.90183 0.87402 0.90368 0.87851 0.91829 0.94487 0.90741 0.90012 0.91358 0.90397 0.89507 0.77041 0.92300 0.90874 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.07 71.98 0.58 -2.25 16 2 C -0.11 -2.33 4.79 30.59 0.15 -2.18 16 3 C -0.10 -1.45 2.37 -10.79 -0.03 -1.48 16 4 C -0.11 -1.27 5.05 30.59 0.15 -1.11 16 5 C -0.15 -1.71 9.53 71.98 0.69 -1.02 16 6 C 0.11 1.81 4.88 86.38 0.42 2.23 16 7 N -0.58 -12.40 2.37 -823.37 -1.95 -14.35 16 8 C 0.10 1.98 5.68 86.38 0.49 2.47 16 9 C -0.15 -2.94 9.66 71.98 0.70 -2.25 16 10 C 0.51 14.47 6.39 87.27 0.56 15.03 16 11 O -0.52 -15.58 9.56 -3.24 -0.03 -15.61 16 12 C 0.50 16.88 7.68 87.27 0.67 17.55 16 13 O -0.54 -18.75 11.66 -3.24 -0.04 -18.79 16 14 N -0.58 -20.90 3.33 -813.32 -2.70 -23.60 16 15 C 0.12 4.30 5.49 86.73 0.48 4.77 16 16 C -0.12 -4.73 5.95 31.78 0.19 -4.54 16 17 C 0.22 9.37 0.71 -10.14 -0.01 9.36 16 18 O -0.56 -23.36 8.62 -148.98 -1.28 -24.65 16 19 C -0.55 -28.66 8.87 25.60 0.23 -28.44 16 20 H 0.05 2.91 8.00 -2.91 -0.02 2.88 16 21 C 0.03 1.45 5.47 84.66 0.46 1.91 16 22 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 23 Si 1.01 47.16 24.72 68.60 1.70 48.86 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.34 -16.43 7.11 99.48 0.71 -15.73 16 26 H -0.26 -11.88 5.46 99.48 0.54 -11.33 16 27 C 0.10 3.89 6.10 86.86 0.53 4.42 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 1.34 4.91 -2.39 -0.01 1.33 16 30 H 0.06 1.03 6.63 -2.39 -0.02 1.02 16 31 H 0.05 1.11 6.97 -2.39 -0.02 1.09 16 32 H 0.03 0.93 5.44 -2.39 -0.01 0.92 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 0.81 6.21 -2.38 -0.01 0.79 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 37 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.05 0.63 6.96 -2.39 -0.02 0.62 16 39 H 0.08 1.46 5.74 -2.39 -0.01 1.45 16 40 H 0.11 1.11 8.07 -2.38 -0.02 1.09 16 41 H 0.08 1.92 5.84 -2.39 -0.01 1.91 16 42 H 0.10 1.31 8.04 -2.39 -0.02 1.30 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.04 0.95 6.45 -2.38 -0.02 0.94 16 45 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 2.62 7.59 -2.39 -0.02 2.60 16 47 H 0.07 2.38 7.70 -2.39 -0.02 2.36 16 48 H 0.08 3.07 6.90 -2.39 -0.02 3.05 16 49 H 0.09 3.32 8.03 -2.39 -0.02 3.30 16 50 H 0.38 14.36 8.48 -74.06 -0.63 13.74 16 51 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 52 H 0.07 2.86 8.04 -2.39 -0.02 2.84 16 53 H 0.07 2.85 7.99 -2.39 -0.02 2.83 16 Total: -1.00 -64.12 389.86 2.36 -61.76 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.12 Total: 27.28 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 6.25 Total: 14.47 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -4.35 Total: -93.32 kcal Atomic # 8 Polarization: -57.69 SS G_CDS: -1.35 Total: -59.04 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.70 Total: 48.86 kcal Total: -64.12 2.36 -61.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332356600.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.425 kcal (2) G-P(sol) polarization free energy of solvation -64.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds