Wall clock time and date at job start Sat Apr 11 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99740 * 2 1 4 4 H 1.08990 * 109.47667 * 26.11726 * 3 2 1 5 5 C 1.52998 * 109.47260 * 146.12022 * 3 2 1 6 6 N 1.46501 * 109.46911 * 299.99849 * 5 3 2 7 7 C 1.34776 * 119.99615 * 179.97438 * 6 5 3 8 8 O 1.21340 * 120.00654 * 359.97438 * 7 6 5 9 9 C 1.49460 * 119.99644 * 179.97438 * 7 6 5 10 10 O 1.21347 * 119.99854 * 353.96062 * 9 7 6 11 11 N 1.34769 * 119.99856 * 173.95612 * 9 7 6 12 12 C 1.46928 * 120.63273 * 351.92056 * 11 9 7 13 13 C 1.53191 * 108.89254 * 233.55575 * 12 11 9 14 14 C 1.53075 * 109.29426 * 305.57832 * 13 12 11 15 15 C 1.53038 * 109.65970 * 61.15223 * 14 13 12 16 16 H 1.09005 * 109.49768 * 58.65188 * 15 14 13 17 17 C 1.50707 * 109.49646 * 178.74567 * 15 14 13 18 18 H 1.08000 * 119.99717 * 359.84061 * 17 15 14 19 19 C 1.37878 * 119.99711 * 179.83703 * 17 15 14 20 20 N 1.31512 * 119.99991 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99889 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47356 * 59.99576 * 21 19 17 23 23 H 1.48493 * 109.47125 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46967 * 299.99965 * 21 19 17 25 25 C 1.46931 * 120.63184 * 171.93760 * 11 9 7 26 26 C 1.53001 * 109.46987 * 266.11718 * 3 2 1 27 27 C 1.53000 * 109.47277 * 173.22097 * 26 3 2 28 28 C 1.53001 * 109.47366 * 169.92069 * 27 26 3 29 29 C 1.53003 * 109.47312 * 289.92102 * 27 26 3 30 30 H 1.08998 * 109.47249 * 184.91658 * 1 2 3 31 31 H 1.09002 * 109.46929 * 304.91941 * 1 2 3 32 32 H 1.09008 * 109.46980 * 64.91757 * 1 2 3 33 33 H 1.09001 * 109.47516 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.47153 * 59.99667 * 5 3 2 35 35 H 0.96998 * 119.99982 * 359.97438 * 6 5 3 36 36 H 1.08995 * 109.58887 * 353.41503 * 12 11 9 37 37 H 1.08996 * 109.58889 * 113.69818 * 12 11 9 38 38 H 1.08996 * 109.50011 * 65.38422 * 13 12 11 39 39 H 1.09000 * 109.49985 * 185.48223 * 13 12 11 40 40 H 1.09000 * 109.34790 * 301.12433 * 14 13 12 41 41 H 1.09006 * 109.44254 * 181.23759 * 14 13 12 42 42 H 0.97003 * 119.99975 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.58776 * 246.16316 * 25 11 9 44 44 H 1.09000 * 109.57982 * 6.44211 * 25 11 9 45 45 H 1.08997 * 109.47240 * 293.22077 * 26 3 2 46 46 H 1.08998 * 109.47417 * 53.21929 * 26 3 2 47 47 H 1.09002 * 109.47076 * 49.92157 * 27 26 3 48 48 H 1.09002 * 109.46951 * 60.00012 * 28 27 26 49 49 H 1.09005 * 109.47229 * 179.97438 * 28 27 26 50 50 H 1.08996 * 109.47436 * 299.99992 * 28 27 26 51 51 H 1.08998 * 109.47159 * 305.63750 * 29 27 26 52 52 H 1.09009 * 109.46758 * 65.63583 * 29 27 26 53 53 H 1.08996 * 109.47657 * 185.63053 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3151 2.0127 0.4523 5 6 3.3117 1.2844 0.8041 6 7 3.0276 0.8763 2.1822 7 6 4.0302 0.7860 3.0784 8 8 5.1681 1.0422 2.7438 9 6 3.7404 0.3702 4.4844 10 8 2.5925 0.2203 4.8484 11 7 4.7538 0.1617 5.3479 12 6 6.1473 0.1656 4.8819 13 6 6.8224 -1.1358 5.3260 14 6 6.6633 -1.2972 6.8399 15 6 5.1769 -1.3745 7.1960 16 1 4.7208 -2.2152 6.6732 17 6 5.0253 -1.5641 8.6834 18 1 5.9013 -1.6262 9.3119 19 6 3.7681 -1.6583 9.2417 20 7 2.7013 -1.5831 8.4762 21 14 3.5800 -1.8926 11.0853 22 1 4.2034 -0.7474 11.7960 23 1 2.1376 -1.9644 11.4306 24 1 4.2498 -3.1532 11.4949 25 6 4.4864 -0.0741 6.7733 26 6 2.3068 1.7316 -1.4392 27 6 2.7702 3.1897 -1.4542 28 6 3.3040 3.5410 -2.8444 29 6 1.5907 4.1032 -1.1149 30 1 -0.3633 -1.0239 0.0881 31 1 -0.3633 0.5883 0.8427 32 1 -0.3633 0.4357 -0.9308 33 1 3.7552 2.2800 0.8038 34 1 4.0069 0.5771 0.3517 35 1 2.1181 0.6711 2.4495 36 1 6.1687 0.2357 3.7944 37 1 6.6745 1.0164 5.3133 38 1 6.3531 -1.9800 4.8209 39 1 7.8816 -1.1017 5.0708 40 1 7.1133 -0.4417 7.3435 41 1 7.1619 -2.2115 7.1617 42 1 1.8169 -1.6490 8.8690 43 1 4.8788 0.7558 7.3610 44 1 3.4117 -0.1595 6.9341 45 1 3.0911 1.0969 -1.8518 46 1 1.4039 1.6312 -2.0414 47 1 3.5605 3.3274 -0.7161 48 1 2.5138 3.4033 -3.5824 49 1 3.6337 4.5799 -2.8551 50 1 4.1443 2.8903 -3.0861 51 1 0.7627 3.8942 -1.7922 52 1 1.2745 3.9219 -0.0876 53 1 1.8946 5.1444 -1.2230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334226168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:25 Heat of formation + Delta-G solvation = -145.023589 kcal Electronic energy + Delta-G solvation = -30934.651539 eV Core-core repulsion = 26805.400585 eV Total energy + Delta-G solvation = -4129.250953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94778 -40.24110 -39.39677 -38.50738 -36.97800 -35.98236 -35.08743 -33.45933 -31.64374 -31.57039 -28.21040 -28.01687 -27.45666 -27.06106 -26.41563 -23.96263 -23.47703 -22.93405 -21.60641 -20.88013 -20.31872 -18.84425 -18.22611 -18.01896 -17.84261 -17.21016 -16.93485 -16.52806 -16.40618 -16.09851 -15.61351 -15.48135 -15.29291 -15.24020 -14.77267 -14.64643 -14.60078 -14.42473 -14.20966 -14.02575 -13.81732 -13.49867 -13.25829 -13.13320 -12.96680 -12.84471 -12.80879 -12.52666 -12.42394 -12.28029 -12.15849 -12.12904 -11.89400 -11.74328 -11.63126 -11.46430 -11.41321 -11.14960 -10.98279 -10.56606 -10.53466 -10.37359 -10.05252 -9.54429 -8.10751 -6.27931 0.36191 1.34113 1.42569 1.44815 1.52107 2.14792 2.41784 2.56030 2.71064 3.16835 3.31802 3.61832 3.86194 4.00006 4.10149 4.12985 4.13662 4.17911 4.33644 4.39310 4.46539 4.46963 4.55937 4.59059 4.66882 4.72902 4.80042 4.80815 4.83064 4.85827 4.90431 4.93407 5.03255 5.06070 5.06810 5.12695 5.15532 5.23324 5.26253 5.33919 5.37224 5.46671 5.49065 5.51559 5.57300 5.84411 5.94021 5.98410 6.19882 6.30115 6.43050 6.71985 6.83816 6.98839 7.41820 8.92828 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.002407 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.565682 B =11631.655076 C =12509.621605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.078 3.922 4 H 0.082 0.918 5 C 0.116 3.884 6 N -0.684 5.684 7 C 0.519 3.481 8 O -0.522 6.522 9 C 0.485 3.515 10 O -0.558 6.558 11 N -0.576 5.576 12 C 0.069 3.931 13 C -0.126 4.126 14 C -0.106 4.106 15 C 0.039 3.961 16 H -0.012 1.012 17 C -0.536 4.536 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.914 5.914 21 Si 0.960 3.040 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.270 1.270 25 C 0.120 3.880 26 C -0.122 4.122 27 C -0.101 4.101 28 C -0.145 4.145 29 C -0.151 4.151 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.415 0.585 36 H 0.140 0.860 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.056 0.944 51 H 0.060 0.940 52 H 0.052 0.948 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 10.284 -23.167 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.020 3.980 4 H 0.100 0.900 5 C -0.006 4.006 6 N -0.336 5.336 7 C 0.300 3.700 8 O -0.401 6.401 9 C 0.267 3.733 10 O -0.437 6.437 11 N -0.307 5.307 12 C -0.052 4.052 13 C -0.164 4.164 14 C -0.144 4.144 15 C 0.020 3.980 16 H 0.006 0.994 17 C -0.575 4.575 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.553 5.553 21 Si 0.785 3.215 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.195 1.195 25 C -0.001 4.001 26 C -0.161 4.161 27 C -0.119 4.119 28 C -0.203 4.203 29 C -0.209 4.209 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.251 0.749 36 H 0.157 0.843 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.079 0.921 52 H 0.071 0.929 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.661 10.225 -23.227 25.386 hybrid contribution -1.122 -0.320 1.468 1.875 sum -1.783 9.905 -21.758 23.973 Atomic orbital electron populations 1.22994 0.79591 1.03613 1.01051 1.87948 1.21260 1.27860 1.95165 1.22509 0.93776 0.85283 0.96419 0.90012 1.21944 0.97965 1.02014 0.78720 1.45698 1.11047 1.66305 1.10517 1.19901 0.85551 0.78661 0.85849 1.90425 1.20339 1.49717 1.79599 1.20532 0.85541 0.79836 0.87375 1.90740 1.21640 1.52333 1.78978 1.48457 1.07547 1.65570 1.09156 1.22953 0.79222 0.98257 1.04729 1.21936 1.01578 0.96880 0.96000 1.21556 0.96592 1.00971 0.95278 1.18893 0.92344 0.91833 0.94947 0.99412 1.21455 0.92510 1.50362 0.93140 0.91879 1.25899 0.95770 0.94612 1.02631 1.70064 0.98260 1.50186 1.36758 0.85587 0.76807 0.79054 0.80082 1.19188 1.21323 1.19470 1.21958 1.03785 0.97970 0.76409 1.22011 1.02946 0.96490 0.94614 1.21198 0.98355 0.93713 0.98651 1.21817 1.01047 1.01639 0.95775 1.21927 0.97941 0.99592 1.01409 0.89251 0.93387 0.92332 0.88234 0.90530 0.74883 0.84341 0.90771 0.93467 0.88038 0.92328 0.92740 0.92966 0.93581 0.89641 0.90882 0.90230 0.90960 0.92305 0.92267 0.92536 0.92086 0.92928 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.88 113.37 1.23 1.57 16 2 O -0.40 -7.89 10.09 -148.98 -1.50 -9.39 16 3 C 0.08 1.22 2.22 30.59 0.07 1.29 16 4 H 0.08 1.13 6.15 -2.39 -0.01 1.12 16 5 C 0.12 2.29 5.17 86.38 0.45 2.74 16 6 N -0.68 -18.23 5.44 -464.41 -2.53 -20.76 16 7 C 0.52 17.35 7.75 87.27 0.68 18.03 16 8 O -0.52 -17.34 13.15 -3.22 -0.04 -17.38 16 9 C 0.48 20.48 7.74 87.27 0.68 21.16 16 10 O -0.56 -27.16 15.92 -3.24 -0.05 -27.21 16 11 N -0.58 -24.85 2.97 -820.49 -2.44 -27.29 16 12 C 0.07 2.42 6.00 86.36 0.52 2.93 16 13 C -0.13 -4.29 6.09 30.68 0.19 -4.11 16 14 C -0.11 -4.35 5.10 30.63 0.16 -4.19 16 15 C 0.04 2.02 2.26 -11.46 -0.03 2.00 16 16 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 17 C -0.54 -29.76 8.56 25.60 0.22 -29.54 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 19 C 0.01 0.59 5.30 84.66 0.45 1.04 16 20 N -0.91 -55.16 11.39 21.45 0.24 -54.92 16 21 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.12 6.12 5.41 86.36 0.47 6.59 16 26 C -0.12 -1.47 4.49 30.59 0.14 -1.33 16 27 C -0.10 -1.07 2.83 -10.79 -0.03 -1.10 16 28 C -0.15 -1.38 9.18 71.98 0.66 -0.72 16 29 C -0.15 -1.51 8.92 71.98 0.64 -0.87 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 0.66 7.98 -2.39 -0.02 0.64 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.10 1.75 6.43 -2.39 -0.02 1.74 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 11.13 7.83 -92.71 -0.73 10.40 16 36 H 0.14 4.64 4.26 -52.69 -0.22 4.41 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.09 5.06 5.13 -2.39 -0.01 5.04 16 45 H 0.07 0.94 8.11 -2.39 -0.02 0.92 16 46 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 47 H 0.07 0.85 6.24 -2.39 -0.01 0.83 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 50 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.06 0.54 8.10 -2.39 -0.02 0.52 16 52 H 0.05 0.56 6.86 -2.38 -0.02 0.54 16 53 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -69.33 412.94 2.14 -67.19 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.05 Total: 28.09 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 6.48 Total: 15.49 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -4.72 Total: -102.96 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -1.60 Total: -53.98 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.33 2.14 -67.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334226168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.833 kcal (2) G-P(sol) polarization free energy of solvation -69.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds