Wall clock time and date at job start Sat Apr 11 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.48256 * 54.97573 * 5 4 2 7 7 O 1.42904 * 109.48199 * 294.94489 * 5 4 2 8 8 C 1.42901 * 114.10207 * 178.85704 * 7 5 4 9 9 C 1.53092 * 109.41477 * 61.15716 * 8 7 5 10 10 C 1.53177 * 109.16300 * 302.39322 * 9 8 7 11 11 C 1.53087 * 109.48289 * 175.00301 * 5 4 2 12 12 H 1.08997 * 109.52316 * 297.49428 * 11 5 4 13 13 N 1.46496 * 109.52397 * 57.62194 * 11 5 4 14 14 C 1.34777 * 119.99994 * 205.00143 * 13 11 5 15 15 O 1.21346 * 120.00203 * 0.02562 * 14 13 11 16 16 C 1.49458 * 119.99691 * 179.97438 * 14 13 11 17 17 O 1.21346 * 120.00106 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99691 * 180.02562 * 16 14 13 19 19 C 1.46496 * 119.99994 * 180.02562 * 18 16 14 20 20 C 1.53000 * 109.47295 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47012 * 180.02562 * 20 19 18 22 22 C 1.50705 * 109.46918 * 180.02562 * 21 20 19 23 23 H 1.07995 * 119.99988 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99837 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99914 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00095 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46756 * 90.00266 * 26 24 22 28 28 H 1.48500 * 109.47090 * 210.00144 * 26 24 22 29 29 H 1.48497 * 109.47292 * 330.00856 * 26 24 22 30 30 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 31 31 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 32 32 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 34 34 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 35 35 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 36 36 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 38 38 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 39 39 H 1.09002 * 109.48128 * 301.17760 * 8 7 5 40 40 H 1.08994 * 109.49542 * 181.14800 * 8 7 5 41 41 H 1.09004 * 109.52421 * 182.49011 * 9 8 7 42 42 H 1.08997 * 109.57047 * 62.32858 * 9 8 7 43 43 H 1.08994 * 109.54599 * 297.11392 * 10 9 8 44 44 H 1.09004 * 109.54775 * 176.84171 * 10 9 8 45 45 H 0.97002 * 119.99656 * 25.00552 * 13 11 5 46 46 H 0.96997 * 119.99682 * 0.02562 * 18 16 14 47 47 H 1.08999 * 109.47133 * 300.00450 * 19 18 16 48 48 H 1.09006 * 109.47225 * 59.99662 * 19 18 16 49 49 H 1.08998 * 109.47057 * 299.99918 * 20 19 18 50 50 H 1.08997 * 109.47013 * 59.99797 * 20 19 18 51 51 H 1.09002 * 109.47537 * 299.99679 * 21 20 19 52 52 H 1.08997 * 109.47478 * 59.99983 * 21 20 19 53 53 H 0.96999 * 119.99770 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 1 3.9955 0.1611 1.0524 7 8 3.9387 -1.6672 0.0913 8 6 5.3502 -1.8172 -0.0734 9 6 5.9428 -2.4655 1.1805 10 6 5.6060 -1.6020 2.4000 11 6 4.0856 -1.4396 2.4927 12 1 3.8397 -0.7810 3.3256 13 7 3.4642 -2.7493 2.7043 14 6 3.3506 -3.2477 3.9513 15 8 3.7626 -2.6115 4.8989 16 6 2.7161 -4.5836 4.1672 17 8 2.3036 -5.2196 3.2196 18 7 2.6021 -5.0818 5.4143 19 6 1.9806 -6.3915 5.6259 20 6 1.9772 -6.7189 7.1204 21 6 1.3288 -8.0869 7.3413 22 6 1.3248 -8.4092 8.8135 23 1 1.7434 -7.7085 9.5207 24 6 0.7878 -9.5990 9.2573 25 7 0.7839 -9.8800 10.5421 26 14 0.0646 -10.8113 8.0339 27 1 1.1244 -11.7464 7.5783 28 1 -1.0270 -11.5795 8.6847 29 1 -0.4784 -10.0718 6.8662 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 3.1301 1.4425 0.0005 37 1 1.7515 -0.1582 2.1370 38 1 1.6053 -1.7197 1.2953 39 1 5.8045 -0.8381 -0.2257 40 1 5.5504 -2.4493 -0.9385 41 1 7.0252 -2.5404 1.0751 42 1 5.5198 -3.4614 1.3114 43 1 6.0714 -0.6222 2.2929 44 1 5.9766 -2.0863 3.3035 45 1 3.1345 -3.2577 1.9468 46 1 2.9314 -4.5732 6.1717 47 1 0.9557 -6.3714 5.2556 48 1 2.5461 -7.1530 5.0887 49 1 3.0023 -6.7391 7.4903 50 1 1.4120 -5.9575 7.6579 51 1 0.3036 -8.0672 6.9714 52 1 1.8943 -8.8481 6.8039 53 1 0.4058 -10.7169 10.8544 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346118001.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:32 Heat of formation + Delta-G solvation = -173.797659 kcal Electronic energy + Delta-G solvation = -30172.293519 eV Core-core repulsion = 26041.794828 eV Total energy + Delta-G solvation = -4130.498691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01531 -40.79854 -39.39680 -37.23538 -37.12323 -36.06152 -35.14523 -33.65072 -33.29806 -31.84305 -29.36786 -28.19747 -27.98569 -26.38724 -25.14854 -23.95104 -23.46848 -22.30450 -21.56493 -20.79346 -20.65967 -19.71076 -18.87526 -18.01490 -17.38204 -17.26770 -17.00801 -16.56990 -16.53460 -16.17540 -16.14091 -15.73481 -15.50001 -15.28632 -14.93821 -14.78330 -14.72971 -14.52493 -14.06029 -13.82708 -13.72683 -13.63080 -13.31449 -13.07124 -13.03686 -12.88034 -12.74544 -12.73568 -12.69707 -12.27131 -12.19254 -11.91454 -11.78870 -11.63672 -11.61621 -11.57096 -11.47888 -11.34314 -11.12017 -10.79262 -10.75890 -10.58347 -10.31158 -10.12796 -8.28865 -6.33266 0.29673 1.26748 1.37945 1.39602 1.51400 2.09324 2.36978 2.54817 2.85302 3.06736 3.36352 3.46469 3.68784 3.87588 3.96399 4.00672 4.03984 4.09736 4.13864 4.15886 4.30938 4.41265 4.46514 4.50502 4.60039 4.68619 4.76270 4.80012 4.83300 4.83696 4.84999 4.88112 4.98699 5.00858 5.02025 5.08391 5.10421 5.12685 5.16672 5.18625 5.30129 5.34889 5.45248 5.48152 5.54348 5.56478 5.64432 5.88854 6.25797 6.27511 6.30661 6.68174 6.74973 6.89689 7.31358 8.87605 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.001929 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.457620 B =14513.156019 C =15144.118286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.109 4.109 5 C 0.091 3.909 6 H 0.098 0.902 7 O -0.386 6.386 8 C 0.059 3.941 9 C -0.155 4.155 10 C -0.133 4.133 11 C 0.110 3.890 12 H 0.097 0.903 13 N -0.675 5.675 14 C 0.514 3.486 15 O -0.540 6.540 16 C 0.501 3.499 17 O -0.546 6.546 18 N -0.688 5.688 19 C 0.124 3.876 20 C -0.104 4.104 21 C -0.011 4.011 22 C -0.532 4.532 23 H 0.035 0.965 24 C 0.002 3.998 25 N -0.951 5.951 26 Si 0.950 3.050 27 H -0.267 1.267 28 H -0.286 1.286 29 H -0.244 1.244 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.056 0.944 45 H 0.417 0.583 46 H 0.418 0.582 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.025 0.975 52 H 0.024 0.976 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 25.010 -27.515 38.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.146 4.146 5 C 0.033 3.967 6 H 0.116 0.884 7 O -0.306 6.306 8 C -0.018 4.018 9 C -0.193 4.193 10 C -0.171 4.171 11 C 0.006 3.994 12 H 0.115 0.885 13 N -0.328 5.328 14 C 0.294 3.706 15 O -0.417 6.417 16 C 0.282 3.718 17 O -0.424 6.424 18 N -0.341 5.341 19 C 0.001 3.999 20 C -0.142 4.142 21 C -0.049 4.049 22 C -0.571 4.571 23 H 0.053 0.947 24 C -0.195 4.195 25 N -0.592 5.592 26 Si 0.773 3.227 27 H -0.192 1.192 28 H -0.212 1.212 29 H -0.168 1.168 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.255 0.745 46 H 0.255 0.745 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.043 0.957 52 H 0.042 0.958 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.125 24.810 -27.518 37.931 hybrid contribution -0.132 -0.948 0.639 1.151 sum 7.993 23.862 -26.879 36.821 Atomic orbital electron populations 1.21850 0.95291 1.01492 1.02009 1.21016 0.95534 0.96580 0.97797 1.21893 1.01244 0.95227 1.02076 1.21695 0.92451 1.01268 0.99221 1.22489 0.96112 0.94215 0.83923 0.88446 1.87968 1.23731 1.69671 1.49180 1.22737 0.80414 1.01112 0.97497 1.22164 1.02442 0.99348 0.95311 1.21997 0.94159 1.02161 0.98800 1.21963 0.93649 0.83772 0.99982 0.88471 1.45709 1.58779 1.20740 1.07545 1.19966 0.80012 0.86217 0.84383 1.90756 1.48923 1.60374 1.41655 1.20336 0.80499 0.87118 0.83893 1.90752 1.49059 1.61057 1.41540 1.45888 1.58917 1.20879 1.08368 1.21545 0.98269 0.82827 0.97235 1.21517 1.01485 0.98179 0.93012 1.19461 0.96623 0.94183 0.94614 1.21470 1.38854 1.03709 0.93018 0.94697 1.26035 0.96061 1.00313 0.97058 1.70070 1.47681 1.25498 1.15918 0.85657 0.78553 0.78800 0.79646 1.19202 1.21157 1.16765 0.92650 0.92149 0.93401 0.91121 0.92412 0.92466 0.92091 0.90042 0.92248 0.91235 0.87851 0.89277 0.92749 0.88347 0.92487 0.74542 0.74472 0.90999 0.90984 0.91823 0.91800 0.95682 0.95808 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.19 71.98 0.66 -1.09 16 2 C -0.09 -1.03 2.87 -10.79 -0.03 -1.06 16 3 C -0.15 -1.27 8.96 71.98 0.64 -0.62 16 4 C -0.11 -1.37 4.12 30.59 0.13 -1.24 16 5 C 0.09 1.02 2.20 30.62 0.07 1.09 16 6 H 0.10 0.76 6.34 -2.39 -0.02 0.75 16 7 O -0.39 -5.11 9.48 -148.98 -1.41 -6.52 16 8 C 0.06 0.54 6.84 72.01 0.49 1.04 16 9 C -0.15 -1.74 5.97 30.68 0.18 -1.56 16 10 C -0.13 -1.68 5.70 30.72 0.17 -1.50 16 11 C 0.11 1.59 2.29 45.08 0.10 1.69 16 12 H 0.10 1.52 7.58 -2.39 -0.02 1.50 16 13 N -0.67 -12.81 3.80 -443.44 -1.69 -14.50 16 14 C 0.51 12.56 7.86 87.27 0.69 13.24 16 15 O -0.54 -14.96 16.14 -3.23 -0.05 -15.01 16 16 C 0.50 14.01 7.89 87.27 0.69 14.69 16 17 O -0.55 -17.45 16.48 -3.23 -0.05 -17.50 16 18 N -0.69 -19.07 5.55 -464.41 -2.58 -21.65 16 19 C 0.12 3.82 5.67 86.38 0.49 4.31 16 20 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 21 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 22 C -0.53 -30.32 9.66 25.60 0.25 -30.08 16 23 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 24 C 0.00 0.12 5.47 84.66 0.46 0.58 16 25 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 26 Si 0.95 44.07 27.47 68.60 1.88 45.95 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 29 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.94 7.70 -2.39 -0.02 0.92 16 34 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 0.44 6.46 -2.39 -0.02 0.43 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 0.94 7.47 -2.39 -0.02 0.92 16 39 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.05 0.83 7.76 -2.39 -0.02 0.82 16 43 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.42 8.09 7.42 -92.71 -0.69 7.40 16 46 H 0.42 10.70 7.94 -92.71 -0.74 9.96 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 49 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 51 H 0.02 1.10 7.20 -2.39 -0.02 1.09 16 52 H 0.02 1.03 7.57 -2.39 -0.02 1.02 16 53 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -69.44 419.50 1.10 -68.34 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.58 Total: 24.75 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.28 Total: -4.48 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -3.96 Total: -95.54 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.52 Total: -39.03 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -69.44 1.10 -68.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346118001.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.459 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds