Wall clock time and date at job start Sat Apr 11 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46714 * 2 1 4 4 C 1.52996 * 112.90915 * 282.01852 * 3 2 1 5 5 C 1.52998 * 109.47363 * 311.24352 * 4 3 2 6 6 C 1.53783 * 113.61178 * 53.27272 * 3 2 1 7 7 H 1.08995 * 113.61885 * 334.47615 * 6 3 2 8 8 N 1.46509 * 113.61009 * 203.66257 * 6 3 2 9 9 C 1.34769 * 119.99732 * 156.53150 * 8 6 3 10 10 O 1.21353 * 120.00161 * 359.97438 * 9 8 6 11 11 C 1.49455 * 120.00154 * 179.97438 * 9 8 6 12 12 O 1.21353 * 119.99685 * 359.97438 * 11 9 8 13 13 N 1.34776 * 120.00423 * 179.97438 * 11 9 8 14 14 C 1.46496 * 120.00189 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47209 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.47274 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99970 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00207 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00131 * 359.72089 * 18 16 15 20 20 Si 1.86798 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47487 * 179.72236 * 20 18 16 22 22 H 1.48500 * 109.47301 * 299.72479 * 20 18 16 23 23 H 1.48504 * 109.47364 * 59.72255 * 20 18 16 24 24 C 1.53777 * 87.17396 * 89.07560 * 6 3 2 25 25 H 1.08996 * 113.61967 * 140.02270 * 24 6 3 26 26 C 1.53007 * 113.60790 * 270.84137 * 24 6 3 27 27 C 1.53779 * 87.08550 * 25.47022 * 24 6 3 28 28 H 1.08996 * 113.61364 * 89.11409 * 27 24 6 29 29 O 1.42892 * 113.61936 * 219.94227 * 27 24 6 30 30 C 1.42903 * 113.99962 * 250.49553 * 29 27 24 31 31 H 1.09003 * 109.46700 * 174.31551 * 1 2 3 32 32 H 1.08994 * 109.46996 * 294.31461 * 1 2 3 33 33 H 1.08992 * 109.46934 * 54.32029 * 1 2 3 34 34 H 1.08998 * 109.46856 * 240.00462 * 2 1 3 35 35 H 1.08994 * 109.47194 * 120.00064 * 2 1 3 36 36 H 1.09009 * 109.47130 * 71.24381 * 4 3 2 37 37 H 1.09004 * 109.47265 * 191.24284 * 4 3 2 38 38 H 1.09005 * 109.47114 * 65.82692 * 5 4 3 39 39 H 1.08993 * 109.47265 * 185.82745 * 5 4 3 40 40 H 1.09000 * 109.47278 * 305.83030 * 5 4 3 41 41 H 0.97000 * 120.00109 * 336.52294 * 8 6 3 42 42 H 0.97006 * 119.99568 * 0.02562 * 13 11 9 43 43 H 1.08996 * 109.47295 * 59.99412 * 14 13 11 44 44 H 1.09003 * 109.47022 * 299.99962 * 14 13 11 45 45 H 1.08995 * 109.47355 * 59.99852 * 15 14 13 46 46 H 1.09003 * 109.46908 * 299.99800 * 15 14 13 47 47 H 0.97001 * 119.99602 * 0.28418 * 19 18 16 48 48 H 1.08995 * 109.47190 * 95.11086 * 26 24 6 49 49 H 1.09004 * 109.46615 * 215.10890 * 26 24 6 50 50 H 1.08994 * 109.47057 * 335.10826 * 26 24 6 51 51 H 1.09002 * 109.47257 * 299.99584 * 30 29 27 52 52 H 1.09006 * 109.46938 * 59.99502 * 30 29 27 53 53 H 1.08996 * 109.47619 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.9618 2.1019 -1.3784 5 6 2.5713 1.1679 -2.4258 6 6 1.4508 2.3041 1.1294 7 1 0.4796 1.9571 1.4820 8 7 1.4720 3.7408 0.8434 9 6 0.6065 4.5647 1.4666 10 8 -0.1907 4.1165 2.2642 11 6 0.6284 6.0305 1.1753 12 8 1.4259 6.4788 0.3780 13 7 -0.2375 6.8544 1.7981 14 6 -0.2163 8.2910 1.5122 15 6 -1.2906 8.9927 2.3454 16 6 -1.2685 10.4707 2.0517 17 1 -0.5588 10.8697 1.3421 18 6 -2.1542 11.3136 2.6889 19 7 -3.0221 10.8270 3.5490 20 14 -2.1262 13.1456 2.3254 21 1 -3.1739 13.8258 3.1285 22 1 -0.7944 13.7000 2.6780 23 1 -2.3880 13.3677 0.8806 24 6 2.6272 1.8320 2.0000 25 1 3.0452 2.6158 2.6316 26 6 2.3414 0.5397 2.7677 27 6 3.4057 1.6142 0.6919 28 1 3.9558 2.4945 0.3595 29 8 4.2030 0.4284 0.6908 30 6 5.6098 0.6738 0.7439 31 1 -0.3633 -1.0227 -0.1018 32 1 -0.3633 0.4231 0.9365 33 1 -0.3633 0.5994 -0.8347 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.9191 2.2976 -1.6289 37 1 2.5145 3.0413 -1.3637 38 1 1.9579 0.2712 -2.5140 39 1 2.6102 1.6777 -3.3884 40 1 3.5802 0.8894 -2.1212 41 1 2.1090 4.0991 0.2056 42 1 -0.8747 6.4961 2.4357 43 1 -0.4138 8.4536 0.4526 44 1 0.7628 8.6976 1.7657 45 1 -1.0926 8.8302 3.4048 46 1 -2.2699 8.5863 2.0922 47 1 -3.0363 9.8757 3.7380 48 1 2.7195 -0.3109 2.2007 49 1 2.8350 0.5773 3.7388 50 1 1.2662 0.4321 2.9104 51 1 5.9088 1.2632 -0.1229 52 1 5.8489 1.2214 1.6556 53 1 6.1448 -0.2758 0.7401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347177540.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:45 Heat of formation + Delta-G solvation = -132.932515 kcal Electronic energy + Delta-G solvation = -30943.642037 eV Core-core repulsion = 26814.915392 eV Total energy + Delta-G solvation = -4128.726645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57477 -41.36579 -39.53058 -37.70265 -37.07254 -35.45612 -34.95097 -34.17875 -32.26049 -31.52539 -29.65295 -28.11400 -27.15920 -25.91031 -25.50080 -24.42067 -24.21976 -23.13889 -21.60528 -21.24160 -20.19273 -19.03664 -18.77331 -18.10601 -17.53506 -17.28584 -17.17032 -16.75416 -16.51730 -16.36088 -15.83704 -15.64235 -15.39631 -15.15059 -14.84143 -14.69725 -14.33878 -14.30153 -14.22126 -13.93495 -13.83823 -13.72696 -13.37011 -13.15949 -13.01947 -12.91089 -12.87661 -12.57577 -12.39032 -12.32862 -12.18903 -12.14972 -12.01474 -11.88713 -11.79940 -11.45621 -11.21598 -11.07902 -11.02784 -10.68967 -10.60363 -10.35555 -10.23881 -10.20088 -8.72746 -6.44674 0.20347 1.16924 1.55144 1.62658 1.82225 1.99848 2.46915 2.59914 2.81214 3.12915 3.17711 3.29072 3.38578 3.56339 3.71113 3.98747 4.13577 4.18565 4.27044 4.28405 4.38713 4.40365 4.49175 4.51387 4.56927 4.60876 4.61583 4.66455 4.69769 4.76206 4.87444 4.89216 4.90700 4.93058 4.97014 5.07445 5.11029 5.17686 5.20407 5.21923 5.27153 5.32737 5.34230 5.39270 5.46725 5.64371 5.81430 5.88819 6.12444 6.22502 6.26814 6.50309 6.61287 6.80940 7.36396 8.69153 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.002031 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.694739 B =13783.290794 C =13874.458135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.062 4.062 4 C -0.114 4.114 5 C -0.144 4.144 6 C 0.117 3.883 7 H 0.106 0.894 8 N -0.670 5.670 9 C 0.519 3.481 10 O -0.537 6.537 11 C 0.501 3.499 12 O -0.546 6.546 13 N -0.689 5.689 14 C 0.145 3.855 15 C 0.002 3.998 16 C -0.621 4.621 17 H 0.056 0.944 18 C -0.035 4.035 19 N -0.934 5.934 20 Si 1.119 2.881 21 H -0.284 1.284 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.140 4.140 25 H 0.070 0.930 26 C -0.128 4.128 27 C 0.080 3.920 28 H 0.091 0.909 29 O -0.373 6.373 30 C 0.023 3.977 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.417 0.583 42 H 0.414 0.586 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.004 0.996 46 H 0.005 0.995 47 H 0.258 0.742 48 H 0.087 0.913 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.047 0.953 52 H 0.041 0.959 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.814 -26.773 -8.791 32.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.139 4.139 3 C -0.063 4.063 4 C -0.152 4.152 5 C -0.201 4.201 6 C 0.012 3.988 7 H 0.124 0.876 8 N -0.322 5.322 9 C 0.299 3.701 10 O -0.413 6.413 11 C 0.282 3.718 12 O -0.424 6.424 13 N -0.341 5.341 14 C 0.023 3.977 15 C -0.035 4.035 16 C -0.659 4.659 17 H 0.075 0.925 18 C -0.233 4.233 19 N -0.570 5.570 20 Si 0.940 3.060 21 H -0.209 1.209 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.160 4.160 25 H 0.089 0.911 26 C -0.186 4.186 27 C 0.021 3.979 28 H 0.109 0.891 29 O -0.291 6.291 30 C -0.073 4.073 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.256 0.744 42 H 0.251 0.749 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.067 0.933 48 H 0.105 0.895 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.066 0.934 52 H 0.059 0.941 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.017 -25.519 -8.429 30.785 hybrid contribution 0.636 -0.882 -0.024 1.087 sum 15.652 -26.400 -8.453 31.834 Atomic orbital electron populations 1.21835 0.95868 1.02192 1.01358 1.21492 0.95260 0.92619 1.04505 1.22546 0.93616 0.96657 0.93510 1.21480 1.01528 0.98613 0.93544 1.21727 1.01066 0.99467 0.97864 1.22384 1.00298 0.78129 0.97979 0.87593 1.45401 1.36013 1.07265 1.43568 1.19935 0.81703 0.86922 0.81539 1.90759 1.38766 1.77286 1.34509 1.20315 0.81821 0.87837 0.81841 1.90722 1.38815 1.77842 1.35038 1.46048 1.35985 1.08600 1.43427 1.21316 0.99824 0.76895 0.99709 1.19345 0.93626 0.95792 0.94735 1.22279 1.22013 0.93226 1.28392 0.92519 1.27429 0.92016 1.10963 0.92856 1.70924 1.36399 1.15664 1.34052 0.82905 0.77054 0.69151 0.76910 1.20947 1.19337 1.19342 1.23396 0.96318 0.99319 0.96998 0.91132 1.21619 1.01648 0.95839 0.99446 1.23888 0.90593 0.88616 0.94790 0.89131 1.87883 1.17460 1.29551 1.94176 1.22941 0.80999 1.03081 1.00310 0.91481 0.93450 0.93134 0.89939 0.89569 0.91843 0.91981 0.91824 0.92534 0.92359 0.74400 0.74931 0.91962 0.91995 0.97728 0.97707 0.93287 0.89491 0.92410 0.92316 0.93410 0.94073 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.44 71.99 0.68 -1.45 16 2 C -0.10 -1.32 4.44 30.60 0.14 -1.18 16 3 C -0.06 -0.90 0.57 -51.56 -0.03 -0.93 16 4 C -0.11 -1.61 4.69 30.59 0.14 -1.46 16 5 C -0.14 -1.69 9.13 71.98 0.66 -1.03 16 6 C 0.12 2.20 3.16 45.52 0.14 2.34 16 7 H 0.11 2.31 5.17 -2.39 -0.01 2.30 16 8 N -0.67 -14.80 4.79 -441.36 -2.11 -16.91 16 9 C 0.52 15.07 7.89 87.27 0.69 15.76 16 10 O -0.54 -17.72 16.10 -3.26 -0.05 -17.77 16 11 C 0.50 16.85 7.89 87.27 0.69 17.54 16 12 O -0.55 -19.89 16.48 -3.26 -0.05 -19.95 16 13 N -0.69 -24.95 5.55 -464.42 -2.58 -27.53 16 14 C 0.15 6.11 5.61 86.38 0.48 6.59 16 15 C 0.00 0.13 4.40 29.85 0.13 0.26 16 16 C -0.62 -34.65 9.11 25.60 0.23 -34.42 16 17 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 18 C -0.03 -1.96 5.46 84.65 0.46 -1.50 16 19 N -0.93 -56.82 13.65 21.45 0.29 -56.53 16 20 Si 1.12 49.34 29.90 68.60 2.05 51.39 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 C -0.14 -2.37 4.32 -10.27 -0.04 -2.42 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 C -0.13 -1.93 8.44 71.98 0.61 -1.32 16 27 C 0.08 1.13 3.54 31.21 0.11 1.24 16 28 H 0.09 1.22 7.72 -2.39 -0.02 1.20 16 29 O -0.37 -5.09 8.30 -148.98 -1.24 -6.32 16 30 C 0.02 0.22 10.86 113.37 1.23 1.45 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.74 6.47 -2.39 -0.02 0.73 16 33 H 0.05 0.73 7.54 -2.39 -0.02 0.72 16 34 H 0.08 0.98 5.85 -2.39 -0.01 0.97 16 35 H 0.09 1.13 4.28 -2.39 -0.01 1.12 16 36 H 0.06 1.00 7.70 -2.38 -0.02 0.99 16 37 H 0.06 0.87 6.61 -2.38 -0.02 0.86 16 38 H 0.06 0.70 6.58 -2.38 -0.02 0.68 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.42 8.29 6.59 -92.71 -0.61 7.68 16 42 H 0.41 14.37 7.95 -92.70 -0.74 13.63 16 43 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 44 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.00 0.23 8.01 -2.39 -0.02 0.21 16 46 H 0.00 0.24 8.00 -2.39 -0.02 0.22 16 47 H 0.26 15.75 7.22 -92.71 -0.67 15.08 16 48 H 0.09 1.21 4.70 -2.39 -0.01 1.19 16 49 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.06 0.91 7.72 -2.39 -0.02 0.89 16 51 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 52 H 0.04 0.40 8.14 -2.38 -0.02 0.38 16 53 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -66.45 412.33 2.32 -64.13 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.32 Total: 30.02 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.32 Total: -0.53 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -4.40 Total: -100.97 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.34 Total: -44.04 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.05 Total: 51.39 kcal Total: -66.45 2.32 -64.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347177540.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.801 kcal (2) G-P(sol) polarization free energy of solvation -66.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds