Wall clock time and date at job start Sat Apr 11 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47294 * 2 1 4 4 C 1.52999 * 109.47085 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46906 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46807 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46807 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47216 * 304.99653 * 7 6 5 9 9 C 1.52999 * 109.47083 * 184.99648 * 7 6 5 10 10 N 1.46498 * 109.47065 * 64.99542 * 7 6 5 11 11 C 1.34777 * 119.99828 * 204.72115 * 10 7 6 12 12 O 1.21353 * 120.00267 * 0.28147 * 11 10 7 13 13 C 1.49445 * 120.00114 * 180.27895 * 11 10 7 14 14 O 1.21353 * 120.00086 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00110 * 180.02562 * 13 11 10 16 16 C 1.47021 * 125.64884 * 359.68530 * 15 13 11 17 17 C 1.54340 * 107.26446 * 178.85296 * 16 15 13 18 18 C 1.55157 * 103.02172 * 338.14333 * 17 16 15 19 19 O 1.42904 * 111.00388 * 277.23346 * 18 17 16 20 20 C 1.50693 * 111.03524 * 153.39532 * 18 17 16 21 21 H 1.07998 * 120.00104 * 6.33652 * 20 18 17 22 22 C 1.37879 * 119.99829 * 186.32634 * 20 18 17 23 23 N 1.31515 * 119.99943 * 0.02562 * 22 20 18 24 24 Si 1.86803 * 120.00058 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47027 * 90.00379 * 24 22 20 26 26 H 1.48499 * 109.47371 * 210.00181 * 24 22 20 27 27 H 1.48504 * 109.47050 * 330.00584 * 24 22 20 28 28 C 1.47432 * 125.64690 * 180.02562 * 15 13 11 29 29 H 1.09002 * 109.46946 * 299.99943 * 1 2 3 30 30 H 1.08998 * 109.46884 * 60.00032 * 1 2 3 31 31 H 1.08996 * 109.47271 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46946 * 240.00057 * 2 1 3 33 33 H 1.08998 * 109.46884 * 119.99968 * 2 1 3 34 34 H 1.09002 * 109.47078 * 60.00137 * 3 2 1 35 35 H 1.08998 * 109.47128 * 299.99818 * 3 2 1 36 36 H 1.09002 * 109.46788 * 60.00282 * 4 3 2 37 37 H 1.08998 * 109.47252 * 300.00064 * 4 3 2 38 38 H 1.08988 * 109.47519 * 60.00257 * 5 4 3 39 39 H 1.08998 * 109.47048 * 299.99982 * 5 4 3 40 40 H 1.08993 * 109.47316 * 60.00091 * 6 5 4 41 41 H 1.08998 * 109.46869 * 299.99561 * 6 5 4 42 42 H 1.08995 * 109.47098 * 300.00077 * 9 7 6 43 43 H 1.09003 * 109.47054 * 59.99725 * 9 7 6 44 44 H 1.08996 * 109.47245 * 179.97438 * 9 7 6 45 45 H 0.97001 * 120.00384 * 25.00562 * 10 7 6 46 46 H 1.08999 * 109.88384 * 298.39724 * 16 15 13 47 47 H 1.09004 * 109.88137 * 59.56907 * 16 15 13 48 48 H 1.09003 * 110.84913 * 219.67299 * 17 16 15 49 49 H 1.08998 * 110.66650 * 96.52719 * 17 16 15 50 50 H 0.96695 * 114.00220 * 173.65427 * 19 18 17 51 51 H 0.97000 * 119.99899 * 179.97438 * 23 22 20 52 52 H 1.09000 * 110.36801 * 322.92508 * 28 15 13 53 53 H 1.08993 * 110.36620 * 85.14001 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 6 6.1201 4.3274 0.0013 8 1 5.6855 4.8664 -0.8405 9 6 7.6449 4.3292 -0.1243 10 7 5.7324 4.9824 1.2530 11 6 5.6111 6.3238 1.3022 12 8 5.8179 6.9886 0.3083 13 6 5.2217 6.9925 2.5807 14 8 5.0143 6.3277 3.5745 15 7 5.0998 8.3338 2.6297 16 6 5.3258 9.2563 1.5075 17 6 5.0414 10.6831 2.0229 18 6 4.1315 10.4348 3.2549 19 8 2.7704 10.2545 2.8585 20 6 4.2561 11.5560 4.2541 21 1 4.8373 12.4333 4.0115 22 6 3.6280 11.4617 5.4778 23 7 2.9205 10.3932 5.7733 24 14 3.7830 12.8512 6.7167 25 1 2.6834 13.8269 6.5064 26 1 3.6984 12.2993 8.0928 27 1 5.0903 13.5321 6.5359 28 6 4.7247 9.1196 3.8195 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9337 0.9284 -0.8892 37 1 3.9330 0.9287 0.8908 38 1 3.7164 3.3985 0.8912 39 1 3.7171 3.3990 -0.8887 40 1 5.9734 2.3715 -0.8889 41 1 5.9733 2.3707 0.8911 42 1 8.0795 3.7902 0.7175 43 1 7.9333 3.8418 -1.0557 44 1 8.0082 5.3568 -0.1248 45 1 5.5671 4.4510 2.0476 46 1 6.3590 9.1817 1.1684 47 1 4.6466 9.0177 0.6890 48 1 4.5177 11.2708 1.2689 49 1 5.9668 11.1763 2.3201 50 1 2.1805 10.0008 3.5814 51 1 2.4789 10.3267 6.6344 52 1 3.9760 8.5866 4.4055 53 1 5.6040 9.3287 4.4286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349171329.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:03 Heat of formation + Delta-G solvation = -171.835068 kcal Electronic energy + Delta-G solvation = -30390.792495 eV Core-core repulsion = 26260.378909 eV Total energy + Delta-G solvation = -4130.413586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84865 -40.19965 -38.90664 -38.11585 -36.71596 -36.03209 -34.25078 -33.86423 -31.96374 -31.92918 -29.70867 -29.10081 -27.71199 -25.87310 -25.14770 -23.68086 -22.25486 -21.88209 -21.57567 -21.56792 -20.91846 -19.15732 -18.71111 -18.08431 -17.29717 -17.13437 -17.00464 -16.60235 -16.28966 -15.81017 -15.68707 -15.29622 -15.03935 -14.85576 -14.69122 -14.67992 -14.42896 -14.32405 -13.96809 -13.58645 -13.54365 -13.49752 -13.33368 -13.13766 -12.85024 -12.75003 -12.61421 -12.53585 -12.44420 -12.36891 -12.25174 -12.23009 -12.12048 -11.91261 -11.77413 -11.55966 -11.33570 -11.23301 -11.20928 -10.74875 -10.56557 -10.35460 -10.25301 -9.65212 -8.25806 -6.42676 0.35525 1.29981 1.43824 1.45618 1.54922 2.13362 2.37220 2.53715 3.00128 3.32694 3.59008 3.76293 3.95784 3.99308 4.04570 4.10080 4.14045 4.19933 4.24508 4.31157 4.37550 4.53729 4.61274 4.62888 4.64730 4.71196 4.77223 4.83773 4.87590 4.92355 4.96581 4.99321 5.02218 5.04775 5.11989 5.13998 5.18670 5.21298 5.25091 5.30614 5.32392 5.39081 5.42066 5.42527 5.51300 5.54582 5.73628 6.00477 6.08083 6.37642 6.62979 6.68747 6.94649 7.25619 7.33967 8.79865 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.002360 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.727564 B =11862.786670 C =13263.334839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.125 4.125 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.116 4.116 7 C 0.136 3.864 8 H 0.079 0.921 9 C -0.160 4.160 10 N -0.683 5.683 11 C 0.517 3.483 12 O -0.531 6.531 13 C 0.499 3.501 14 O -0.562 6.562 15 N -0.584 5.584 16 C 0.121 3.879 17 C -0.116 4.116 18 C 0.233 3.767 19 O -0.588 6.588 20 C -0.554 4.554 21 H 0.070 0.930 22 C 0.027 3.973 23 N -0.915 5.915 24 Si 0.966 3.034 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.265 1.265 28 C 0.107 3.893 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.039 0.961 45 H 0.415 0.585 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.374 0.626 51 H 0.270 0.730 52 H 0.058 0.942 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 -18.952 -12.823 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.163 4.163 4 C -0.150 4.150 5 C -0.162 4.162 6 C -0.153 4.153 7 C 0.033 3.967 8 H 0.097 0.903 9 C -0.218 4.218 10 N -0.337 5.337 11 C 0.297 3.703 12 O -0.408 6.408 13 C 0.283 3.717 14 O -0.443 6.443 15 N -0.316 5.316 16 C -0.001 4.001 17 C -0.153 4.153 18 C 0.192 3.808 19 O -0.395 6.395 20 C -0.593 4.593 21 H 0.088 0.912 22 C -0.174 4.174 23 N -0.554 5.554 24 Si 0.791 3.209 25 H -0.202 1.202 26 H -0.210 1.210 27 H -0.190 1.190 28 C -0.016 4.016 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.058 0.942 45 H 0.252 0.748 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.111 0.889 50 H 0.223 0.777 51 H 0.079 0.921 52 H 0.076 0.924 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.861 -18.838 -13.504 23.683 hybrid contribution -0.650 0.514 2.058 2.219 sum 4.211 -18.323 -11.446 22.012 Atomic orbital electron populations 1.21809 0.96091 1.01895 1.01587 1.21524 0.95783 0.96431 1.02287 1.21651 0.96097 0.97085 1.01417 1.21549 0.94808 0.95889 1.02725 1.21628 0.95572 0.97478 1.01506 1.21887 0.95260 0.93260 1.04933 1.21352 0.96012 0.94261 0.85065 0.90260 1.22156 0.93931 1.01889 1.03811 1.45917 1.67258 1.04885 1.15599 1.19755 0.78642 0.84271 0.87582 1.90712 1.49650 1.64466 1.35936 1.20355 0.79730 0.82057 0.89585 1.90695 1.52178 1.63798 1.37592 1.48720 1.63333 1.04973 1.14533 1.22142 1.01677 0.88438 0.87875 1.22725 0.99777 0.95155 0.97673 1.19873 0.79777 0.89791 0.91314 1.86124 1.20892 1.92263 1.40244 1.21748 1.33005 1.04405 1.00103 0.91176 1.25826 0.93766 0.98016 0.99795 1.69824 1.32731 1.28743 1.24059 0.85436 0.78836 0.79017 0.77626 1.20161 1.21033 1.18957 1.23049 0.98736 0.93428 0.86344 0.93370 0.92836 0.92087 0.91335 0.91953 0.93337 0.92421 0.90715 0.91605 0.93618 0.92439 0.87734 0.90033 0.91430 0.88989 0.94151 0.74828 0.89769 0.91329 0.89656 0.88928 0.77731 0.92050 0.92375 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.57 5.93 30.59 0.18 -1.39 16 3 C -0.12 -1.86 5.21 30.59 0.16 -1.70 16 4 C -0.11 -1.44 5.21 30.60 0.16 -1.28 16 5 C -0.12 -1.92 5.10 30.60 0.16 -1.76 16 6 C -0.12 -1.43 4.75 30.60 0.15 -1.28 16 7 C 0.14 2.49 2.57 44.99 0.12 2.61 16 8 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 9 C -0.16 -2.57 9.48 71.98 0.68 -1.88 16 10 N -0.68 -16.90 4.52 -443.87 -2.01 -18.91 16 11 C 0.52 17.19 7.82 87.27 0.68 17.87 16 12 O -0.53 -18.72 13.79 -3.26 -0.04 -18.77 16 13 C 0.50 20.36 7.91 87.27 0.69 21.05 16 14 O -0.56 -25.16 16.73 -3.26 -0.05 -25.22 16 15 N -0.58 -25.16 3.33 -813.28 -2.70 -27.87 16 16 C 0.12 4.61 5.49 86.73 0.48 5.09 16 17 C -0.12 -4.65 6.13 31.79 0.19 -4.45 16 18 C 0.23 11.40 0.87 -10.14 -0.01 11.39 16 19 O -0.59 -30.58 13.16 -148.98 -1.96 -32.54 16 20 C -0.55 -28.73 8.27 25.60 0.21 -28.52 16 21 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 22 C 0.03 1.40 5.29 84.65 0.45 1.85 16 23 N -0.91 -49.20 10.69 21.45 0.23 -48.97 16 24 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 25 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 C 0.11 5.22 5.38 86.86 0.47 5.69 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 38 H 0.04 0.90 7.75 -2.39 -0.02 0.88 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.41 9.66 8.07 -92.71 -0.75 8.91 16 46 H 0.08 2.89 7.71 -2.39 -0.02 2.87 16 47 H 0.07 2.65 7.57 -2.38 -0.02 2.63 16 48 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 49 H 0.09 3.42 8.03 -2.39 -0.02 3.40 16 50 H 0.37 20.11 7.56 -74.06 -0.56 19.55 16 51 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 52 H 0.06 3.20 7.33 -2.39 -0.02 3.19 16 53 H 0.06 2.80 8.03 -2.39 -0.02 2.78 16 Total: -1.00 -62.14 424.44 0.54 -61.61 By element: Atomic # 1 Polarization: 45.71 SS G_CDS: -0.42 Total: 45.29 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 5.48 Total: 21.94 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -4.48 Total: -95.75 kcal Atomic # 8 Polarization: -74.46 SS G_CDS: -2.06 Total: -76.52 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -62.14 0.54 -61.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349171329.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.229 kcal (2) G-P(sol) polarization free energy of solvation -62.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds