Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 C 1.53002 * 109.46937 * 292.71875 * 3 2 1 5 5 C 1.53003 * 109.46813 * 172.71839 * 3 2 1 6 6 N 1.46499 * 109.47052 * 52.72130 * 3 2 1 7 7 C 1.46509 * 119.99644 * 252.39541 * 6 3 2 8 8 C 1.50697 * 109.46955 * 269.99776 * 7 6 3 9 9 H 1.08002 * 119.99900 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99958 * 179.72309 * 8 7 6 11 11 N 1.31515 * 119.99711 * 0.27975 * 10 8 7 12 12 Si 1.86797 * 120.00110 * 180.27735 * 10 8 7 13 13 H 1.48504 * 109.46899 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47173 * 120.00231 * 12 10 8 15 15 H 1.48495 * 109.47096 * 240.00225 * 12 10 8 16 16 C 1.34777 * 120.00171 * 72.39487 * 6 3 2 17 17 O 1.21280 * 119.99631 * 177.07864 * 16 6 3 18 18 C 1.50696 * 119.99862 * 357.08428 * 16 6 3 19 19 C 1.53004 * 109.46779 * 188.19310 * 18 16 6 20 20 C 1.53001 * 109.46782 * 179.97438 * 19 18 16 21 21 H 1.09003 * 109.87121 * 53.99195 * 20 19 18 22 22 C 1.54102 * 109.87787 * 174.99690 * 20 19 18 23 23 C 1.54806 * 104.18769 * 121.45515 * 22 20 19 24 24 C 1.54992 * 102.09368 * 20.88032 * 23 22 20 25 25 H 1.09000 * 110.61913 * 81.48018 * 24 23 22 26 26 C 1.50704 * 110.61922 * 204.47510 * 24 23 22 27 27 N 1.34776 * 120.00128 * 294.99969 * 26 24 23 28 28 O 1.21285 * 119.99648 * 114.99995 * 26 24 23 29 29 O 1.43742 * 109.88025 * 292.82580 * 20 19 18 30 30 H 1.09002 * 109.46712 * 184.84991 * 1 2 3 31 31 H 1.09000 * 109.47167 * 304.85548 * 1 2 3 32 32 H 1.09003 * 109.47037 * 64.85058 * 1 2 3 33 33 H 1.09001 * 109.46801 * 240.00117 * 2 1 3 34 34 H 1.08993 * 109.47058 * 120.00254 * 2 1 3 35 35 H 1.09005 * 109.46697 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.47142 * 299.99930 * 4 3 2 37 37 H 1.08994 * 109.47094 * 60.00429 * 4 3 2 38 38 H 1.09000 * 109.47037 * 335.11249 * 5 3 2 39 39 H 1.09000 * 109.47059 * 95.11360 * 5 3 2 40 40 H 1.08998 * 109.46968 * 215.11540 * 5 3 2 41 41 H 1.08996 * 109.46522 * 150.00019 * 7 6 3 42 42 H 1.09001 * 109.47080 * 30.00143 * 7 6 3 43 43 H 0.96996 * 119.99891 * 179.97438 * 11 10 8 44 44 H 1.09005 * 109.46831 * 308.18763 * 18 16 6 45 45 H 1.08995 * 109.47517 * 68.19125 * 18 16 6 46 46 H 1.08996 * 109.47041 * 299.99196 * 19 18 16 47 47 H 1.08995 * 109.47247 * 59.99650 * 19 18 16 48 48 H 1.09004 * 110.48803 * 240.13252 * 22 20 19 49 49 H 1.08995 * 110.48815 * 2.77826 * 22 20 19 50 50 H 1.09001 * 110.91033 * 139.08291 * 23 22 20 51 51 H 1.09005 * 110.90854 * 262.64957 * 23 22 20 52 52 H 0.96999 * 119.99941 * 0.02562 * 27 26 24 53 53 H 0.96998 * 119.99750 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6847 2.1090 -1.3306 5 6 3.5591 1.4464 0.1828 6 7 1.4140 2.1818 1.0990 7 6 0.3874 3.1874 0.8142 8 6 1.0411 4.5309 0.6177 9 1 2.1140 4.6261 0.6966 10 6 0.2701 5.6374 0.3310 11 7 -1.0364 5.5214 0.2344 12 14 1.0811 7.3013 0.0798 13 1 2.5511 7.1647 0.2400 14 1 0.7767 7.7993 -1.2858 15 1 0.5603 8.2626 1.0847 16 6 1.7825 1.9368 2.3721 17 8 1.3030 2.5855 3.2777 18 6 2.7904 0.8568 2.6701 19 6 2.8788 0.6453 4.1829 20 6 3.9017 -0.4516 4.4855 21 1 4.8542 -0.2103 4.0138 22 6 4.0906 -0.5861 6.0089 23 6 3.7177 -2.0583 6.3090 24 6 3.8887 -2.7260 4.9208 25 1 4.9369 -2.9589 4.7333 26 6 3.0417 -3.9686 4.8217 27 7 3.3031 -5.0273 5.6136 28 8 2.1247 -4.0157 4.0292 29 8 3.4197 -1.7164 4.0014 30 1 -0.3633 -1.0240 0.0869 31 1 -0.3633 0.5873 0.8433 32 1 -0.3633 0.4368 -0.9303 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0485 3.1366 -1.3307 36 1 2.1505 1.5590 -2.1483 37 1 0.6026 2.1063 -1.4608 38 1 3.8657 0.5342 0.6946 39 1 4.0424 1.4956 -0.7929 40 1 3.8513 2.3121 0.7771 41 1 -0.3100 3.2415 1.6502 42 1 -0.1519 2.9097 -0.0915 43 1 -1.5788 6.2999 0.0331 44 1 2.4803 -0.0718 2.1909 45 1 3.7664 1.1550 2.2873 46 1 3.1889 1.5738 4.6621 47 1 1.9028 0.3471 4.5657 48 1 5.1274 -0.3915 6.2835 49 1 3.4212 0.0924 6.5377 50 1 4.4033 -2.4927 7.0367 51 1 2.6867 -2.1359 6.6542 52 1 4.0362 -4.9894 6.2476 53 1 2.7577 -5.8269 5.5500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459268311.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -147.726901 kcal Electronic energy + Delta-G solvation = -31991.074590 eV Core-core repulsion = 27861.706412 eV Total energy + Delta-G solvation = -4129.368178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52910 -41.09940 -39.43574 -38.29959 -35.46954 -34.85089 -34.39023 -33.29498 -32.92377 -31.42131 -30.74081 -29.04282 -27.85338 -25.92140 -24.81442 -24.21174 -23.25735 -22.01216 -21.58399 -21.50456 -19.28900 -18.68153 -18.57689 -17.95269 -17.45807 -17.25615 -16.90206 -16.76293 -16.29189 -15.94641 -15.74587 -15.71958 -15.47870 -15.16530 -14.58248 -14.41468 -14.30225 -14.25014 -13.97085 -13.82297 -13.54238 -13.32451 -13.10263 -12.92454 -12.85176 -12.82619 -12.72732 -12.62351 -12.47465 -12.38114 -12.20514 -12.01109 -11.91487 -11.75458 -11.61164 -11.47862 -11.43457 -11.11969 -10.99757 -10.69277 -10.59975 -10.56637 -10.48496 -9.30557 -8.17697 -6.30567 1.34799 1.37155 1.48894 1.57236 1.91554 2.20856 2.32871 2.48692 3.10179 3.10748 3.52590 3.66309 3.79676 3.85572 3.94919 4.00155 4.03381 4.12139 4.16701 4.25055 4.34877 4.40583 4.42421 4.61452 4.62014 4.70687 4.73848 4.79654 4.85904 4.89774 4.92271 4.98023 5.02083 5.04412 5.06806 5.10714 5.17199 5.22785 5.25596 5.30402 5.33034 5.41171 5.47724 5.58320 5.67938 5.82718 5.97041 5.98283 6.14435 6.48293 6.76344 6.92744 7.33496 7.35218 7.58961 8.89275 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016744 B = 0.002920 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.832159 B = 9586.965505 C =10358.551246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.158 3.842 4 C -0.142 4.142 5 C -0.161 4.161 6 N -0.589 5.589 7 C 0.266 3.734 8 C -0.522 4.522 9 H 0.050 0.950 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.964 3.036 13 H -0.266 1.266 14 H -0.270 1.270 15 H -0.284 1.284 16 C 0.495 3.505 17 O -0.604 6.604 18 C -0.140 4.140 19 C -0.100 4.100 20 C 0.078 3.922 21 H 0.098 0.902 22 C -0.149 4.149 23 C -0.135 4.135 24 C 0.052 3.948 25 H 0.134 0.866 26 C 0.515 3.485 27 N -0.828 5.828 28 O -0.586 6.586 29 O -0.376 6.376 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.046 0.954 41 H -0.019 1.019 42 H 0.029 0.971 43 H 0.264 0.736 44 H 0.107 0.893 45 H 0.123 0.877 46 H 0.076 0.924 47 H 0.041 0.959 48 H 0.113 0.887 49 H 0.073 0.927 50 H 0.131 0.869 51 H 0.062 0.938 52 H 0.421 0.579 53 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.797 -22.119 9.231 30.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.073 3.927 4 C -0.199 4.199 5 C -0.218 4.218 6 N -0.320 5.320 7 C 0.145 3.855 8 C -0.561 4.561 9 H 0.069 0.931 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.788 3.212 13 H -0.190 1.190 14 H -0.196 1.196 15 H -0.210 1.210 16 C 0.284 3.716 17 O -0.487 6.487 18 C -0.179 4.179 19 C -0.138 4.138 20 C 0.021 3.979 21 H 0.116 0.884 22 C -0.186 4.186 23 C -0.173 4.173 24 C -0.009 4.009 25 H 0.151 0.849 26 C 0.300 3.700 27 N -0.394 5.394 28 O -0.465 6.465 29 O -0.295 6.295 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.065 0.935 41 H -0.001 1.001 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.141 0.859 46 H 0.095 0.905 47 H 0.060 0.940 48 H 0.131 0.869 49 H 0.091 0.909 50 H 0.149 0.851 51 H 0.081 0.919 52 H 0.253 0.747 53 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 17.730 -21.563 8.879 29.294 hybrid contribution -0.697 1.173 0.286 1.394 sum 17.034 -20.389 9.165 28.105 Atomic orbital electron populations 1.21725 0.96980 1.01003 1.00832 1.22179 0.95603 0.95107 1.03865 1.20711 0.93744 0.91320 0.86886 1.22066 1.01404 1.01063 0.95408 1.22609 0.92821 1.02562 1.03835 1.48396 1.39520 1.38188 1.05865 1.18680 0.86461 0.86111 0.94234 1.21641 0.93336 0.94037 1.47070 0.93127 1.25830 0.95326 1.02941 0.95244 1.70076 1.05566 1.31409 1.50140 0.85425 0.78771 0.79054 0.77912 1.19003 1.19558 1.21048 1.21363 0.83329 0.84671 0.82200 1.90600 1.58570 1.53078 1.46444 1.22359 0.99420 0.97417 0.98718 1.21531 0.99248 0.98292 0.94727 1.22952 0.96684 0.82990 0.95318 0.88409 1.23041 1.04647 0.96917 0.94020 1.23128 1.03589 0.95049 0.95532 1.23270 0.98793 0.87711 0.91107 0.84904 1.20736 0.83858 0.85611 0.79806 1.43541 1.37837 1.16688 1.41313 1.90786 1.33225 1.83179 1.39353 1.89030 1.76428 1.15677 1.48403 0.91773 0.96032 0.92777 0.87997 0.90844 0.93020 0.88973 0.93835 0.89226 0.89525 0.93500 1.00118 0.95291 0.92678 0.87562 0.85920 0.90513 0.93990 0.86872 0.90872 0.85102 0.91916 0.74664 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.32 71.98 0.67 -4.41 16 2 C -0.13 -3.84 4.72 30.60 0.14 -3.69 16 3 C 0.16 5.38 0.70 3.61 0.00 5.39 16 4 C -0.14 -5.00 7.03 71.98 0.51 -4.49 16 5 C -0.16 -4.32 7.29 71.98 0.53 -3.80 16 6 N -0.59 -26.75 1.37 -779.06 -1.07 -27.82 16 7 C 0.27 15.08 3.83 85.63 0.33 15.40 16 8 C -0.52 -30.92 8.21 25.60 0.21 -30.71 16 9 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 10 C 0.00 0.28 5.46 84.65 0.46 0.74 16 11 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 12 Si 0.96 46.36 29.54 68.60 2.03 48.39 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 16 C 0.49 22.54 6.99 87.66 0.61 23.15 16 17 O -0.60 -33.77 15.59 -3.03 -0.05 -33.82 16 18 C -0.14 -4.52 3.40 29.85 0.10 -4.42 16 19 C -0.10 -2.96 4.03 30.60 0.12 -2.83 16 20 C 0.08 1.55 3.41 30.97 0.11 1.66 16 21 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 22 C -0.15 -1.98 6.64 31.58 0.21 -1.77 16 23 C -0.14 -1.42 6.57 31.89 0.21 -1.21 16 24 C 0.05 0.77 3.76 30.53 0.11 0.88 16 25 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 26 C 0.52 9.82 7.48 87.66 0.66 10.48 16 27 N -0.83 -6.39 8.86 -173.53 -1.54 -7.92 16 28 O -0.59 -18.99 17.40 15.19 0.26 -18.73 16 29 O -0.38 -9.16 10.12 -130.75 -1.32 -10.48 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.02 0.88 6.80 -2.39 -0.02 0.87 16 32 H 0.05 1.83 6.87 -2.39 -0.02 1.81 16 33 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.07 2.16 4.87 -2.39 -0.01 2.14 16 35 H 0.05 2.09 7.06 -2.38 -0.02 2.07 16 36 H 0.09 2.42 8.12 -2.39 -0.02 2.40 16 37 H 0.04 1.71 5.10 -2.39 -0.01 1.70 16 38 H 0.09 1.93 5.65 -2.39 -0.01 1.92 16 39 H 0.09 1.91 7.75 -2.39 -0.02 1.89 16 40 H 0.05 1.45 7.02 -2.39 -0.02 1.43 16 41 H -0.02 -1.29 7.46 -2.39 -0.02 -1.31 16 42 H 0.03 1.67 5.99 -2.39 -0.01 1.66 16 43 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.11 3.33 4.48 -2.38 -0.01 3.32 16 45 H 0.12 3.27 5.20 -2.39 -0.01 3.26 16 46 H 0.08 2.34 8.01 -2.39 -0.02 2.32 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 1.19 7.70 -2.39 -0.02 1.18 16 50 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 51 H 0.06 0.93 8.05 -2.38 -0.02 0.91 16 52 H 0.42 -0.29 8.83 -92.71 -0.82 -1.11 16 53 H 0.41 2.81 8.93 -92.71 -0.83 1.98 16 Total: -1.00 -91.88 403.33 2.87 -89.01 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.71 Total: 19.05 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 4.98 Total: 0.37 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -2.32 Total: -93.79 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -1.11 Total: -63.03 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -91.88 2.87 -89.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459268311.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.721 kcal (2) G-P(sol) polarization free energy of solvation -91.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds