Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 C 1.53003 * 109.47345 * 119.99993 * 2 1 3 5 5 C 1.52998 * 109.46977 * 65.77329 * 4 2 1 6 6 H 1.09001 * 109.47229 * 305.64083 * 5 4 2 7 7 C 1.52998 * 109.46756 * 185.64397 * 5 4 2 8 8 N 1.46508 * 109.46836 * 175.07693 * 7 5 4 9 9 C 1.34779 * 119.99950 * 184.92768 * 8 7 5 10 10 O 1.21586 * 119.99877 * 4.97086 * 9 8 7 11 11 N 1.34776 * 120.00041 * 184.97533 * 9 8 7 12 12 C 1.46923 * 120.62940 * 354.87585 * 11 9 8 13 13 C 1.53194 * 108.89504 * 233.56068 * 12 11 9 14 14 C 1.53066 * 109.29316 * 305.57901 * 13 12 11 15 15 C 1.53039 * 109.65888 * 61.15542 * 14 13 12 16 16 H 1.08995 * 109.50334 * 58.64850 * 15 14 13 17 17 C 1.50706 * 109.50252 * 178.74500 * 15 14 13 18 18 H 1.08003 * 119.99454 * 359.84030 * 17 15 14 19 19 C 1.37870 * 120.00355 * 179.83721 * 17 15 14 20 20 N 1.31513 * 120.00278 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99995 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47104 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47138 * 119.99899 * 21 19 17 24 24 H 1.48498 * 109.46977 * 240.00116 * 21 19 17 25 25 C 1.46927 * 120.63018 * 174.90394 * 11 9 8 26 26 C 1.52994 * 109.46973 * 65.64758 * 5 4 2 27 27 C 1.50694 * 109.47795 * 58.79630 * 26 5 4 28 28 O 1.20827 * 119.99577 * 2.85082 * 27 26 5 29 29 O 1.34225 * 120.00706 * 182.84760 * 27 26 5 30 30 H 1.09005 * 109.46942 * 299.99536 * 1 2 3 31 31 H 1.08999 * 109.47105 * 59.99896 * 1 2 3 32 32 H 1.08999 * 109.46681 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46924 * 240.00018 * 2 1 3 34 34 H 1.08997 * 109.47539 * 184.97557 * 3 2 1 35 35 H 1.09003 * 109.47363 * 304.97999 * 3 2 1 36 36 H 1.09006 * 109.47079 * 64.97570 * 3 2 1 37 37 H 1.09005 * 109.46715 * 305.77665 * 4 2 1 38 38 H 1.08999 * 109.47025 * 185.77816 * 4 2 1 39 39 H 1.08997 * 109.47449 * 55.08043 * 7 5 4 40 40 H 1.08998 * 109.47470 * 295.07411 * 7 5 4 41 41 H 0.96997 * 119.99940 * 4.92655 * 8 7 5 42 42 H 1.09005 * 109.58882 * 353.42098 * 12 11 9 43 43 H 1.09002 * 109.58441 * 113.69931 * 12 11 9 44 44 H 1.09004 * 109.49168 * 65.39076 * 13 12 11 45 45 H 1.08999 * 109.49523 * 185.48269 * 13 12 11 46 46 H 1.08995 * 109.35154 * 301.12941 * 14 13 12 47 47 H 1.09001 * 109.44419 * 181.23260 * 14 13 12 48 48 H 0.97000 * 120.00211 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.58478 * 246.15238 * 25 11 9 50 50 H 1.08995 * 109.58403 * 6.58050 * 25 11 9 51 51 H 1.09005 * 109.47364 * 178.80197 * 26 5 4 52 52 H 1.09008 * 109.47200 * 298.79715 * 26 5 4 53 53 H 0.96695 * 117.00766 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6520 -2.1995 1.1788 6 1 0.5764 -2.2859 1.0250 7 6 2.0370 -2.8907 2.4883 8 7 1.5607 -4.2761 2.4676 9 6 1.6989 -5.0526 3.5605 10 8 2.1355 -4.5788 4.5916 11 7 1.3531 -6.3543 3.5104 12 6 0.7206 -6.9151 2.3087 13 6 -0.5814 -7.6135 2.7134 14 6 -0.2849 -8.6407 3.8088 15 6 0.2888 -7.9318 5.0378 16 1 -0.4242 -7.1888 5.3951 17 6 0.5505 -8.9421 6.1249 18 1 0.3275 -9.9855 5.9574 19 6 1.0747 -8.5346 7.3332 20 7 1.3469 -7.2641 7.5370 21 14 1.3998 -9.7871 8.6804 22 1 1.0114 -11.1388 8.2038 23 1 2.8442 -9.7795 9.0254 24 1 0.6018 -9.4387 9.8833 25 6 1.6010 -7.2393 4.6567 26 6 2.3889 -2.8653 0.0149 27 6 3.8757 -2.7201 0.2127 28 8 4.3034 -2.1889 1.2101 29 8 4.7250 -3.1810 -0.7190 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1263 1.4439 -0.0891 35 1 1.6056 1.9815 -0.8420 36 1 1.7512 1.9300 0.9312 37 1 1.5947 -0.2706 2.1362 38 1 3.1251 -0.6325 1.3024 39 1 1.5814 -2.3624 3.3257 40 1 3.1213 -2.8810 2.5992 41 1 1.1458 -4.6344 1.6674 42 1 0.5013 -6.1135 1.6033 43 1 1.3933 -7.6363 1.8446 44 1 -1.2881 -6.8748 3.0916 45 1 -1.0092 -8.1163 1.8461 46 1 0.4388 -9.3662 3.4373 47 1 -1.2061 -9.1547 4.0832 48 1 1.7161 -6.9775 8.3869 49 1 2.3444 -7.9889 4.3855 50 1 1.9626 -6.6517 5.5005 51 1 2.1288 -3.9232 -0.0223 52 1 2.0984 -2.3867 -0.9204 53 1 5.6696 -3.0654 -0.5477 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588890425.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -163.712159 kcal Electronic energy + Delta-G solvation = -31399.525182 eV Core-core repulsion = 27269.463831 eV Total energy + Delta-G solvation = -4130.061351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78276 -41.08016 -38.89209 -38.24393 -36.89328 -36.00169 -35.22010 -33.66802 -32.90299 -31.45905 -29.22189 -27.96701 -27.44743 -26.83853 -25.43826 -23.61020 -23.37401 -21.83290 -21.49165 -20.62612 -20.11413 -19.10678 -19.03200 -18.23958 -17.61172 -17.15835 -16.91887 -16.63597 -16.38407 -15.79817 -15.52725 -15.35749 -15.18178 -15.00287 -14.81452 -14.52962 -14.37607 -14.25418 -13.96206 -13.86581 -13.66110 -13.48267 -13.14378 -12.91452 -12.88355 -12.70641 -12.63116 -12.54551 -12.27502 -12.21216 -12.14679 -12.11265 -11.84056 -11.72943 -11.60872 -11.48514 -11.25495 -11.18259 -10.93883 -10.89589 -10.79443 -10.51810 -10.06665 -9.21945 -8.08895 -6.26854 1.30458 1.39389 1.40717 1.53040 1.81054 2.25076 2.27371 2.42178 3.07422 3.20895 3.58879 3.70091 3.87431 4.07090 4.12986 4.18123 4.23868 4.30735 4.40446 4.47685 4.57640 4.59712 4.62231 4.72230 4.75809 4.78264 4.83011 4.84461 4.88306 4.90994 5.01182 5.10176 5.13024 5.15657 5.19924 5.29334 5.29571 5.30296 5.34511 5.38615 5.52710 5.56577 5.58684 5.60294 5.68266 5.83025 5.91496 6.00394 6.19739 6.37486 6.87357 7.07541 7.17986 7.43356 7.72663 8.94057 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.002518 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.651755 B =11117.609339 C =11231.175296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.121 4.121 5 C -0.075 4.075 6 H 0.117 0.883 7 C 0.130 3.870 8 N -0.730 5.730 9 C 0.690 3.310 10 O -0.644 6.644 11 N -0.627 5.627 12 C 0.109 3.891 13 C -0.125 4.125 14 C -0.105 4.105 15 C 0.038 3.962 16 H -0.017 1.017 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.915 5.915 21 Si 0.958 3.042 22 H -0.258 1.258 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.142 3.858 26 C -0.112 4.112 27 C 0.474 3.526 28 O -0.539 6.539 29 O -0.517 6.517 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.407 0.593 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.108 0.892 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.258 0.742 49 H 0.034 0.966 50 H 0.072 0.928 51 H 0.122 0.878 52 H 0.144 0.856 53 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 11.477 -26.151 28.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.159 4.159 5 C -0.093 4.093 6 H 0.135 0.865 7 C 0.006 3.994 8 N -0.390 5.390 9 C 0.391 3.609 10 O -0.526 6.526 11 N -0.363 5.363 12 C -0.013 4.013 13 C -0.163 4.163 14 C -0.143 4.143 15 C 0.019 3.981 16 H 0.001 0.999 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.554 5.554 21 Si 0.783 3.217 22 H -0.182 1.182 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.019 3.981 26 C -0.148 4.148 27 C 0.318 3.682 28 O -0.429 6.429 29 O -0.330 6.330 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.247 0.753 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.126 0.874 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.052 0.948 50 H 0.090 0.910 51 H 0.140 0.860 52 H 0.161 0.839 53 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -0.618 12.022 -25.117 27.852 hybrid contribution 0.971 -0.422 1.652 1.962 sum 0.353 11.599 -23.465 26.178 Atomic orbital electron populations 1.21932 0.94475 1.02557 1.01823 1.21146 0.96426 0.95950 0.97508 1.21839 1.00620 0.96253 1.01888 1.21857 1.02393 0.92871 0.98736 1.21295 1.01775 0.95191 0.91063 0.86472 1.21526 0.99698 0.79849 0.98330 1.45086 1.66575 1.12968 1.14413 1.16273 0.79013 0.81762 0.83840 1.90894 1.54997 1.74110 1.32560 1.47669 1.63292 1.07142 1.18225 1.21890 0.94611 0.98971 0.85837 1.21915 0.96688 0.98281 0.99438 1.21506 0.99948 0.97708 0.95104 1.18916 0.92173 0.93794 0.93262 0.99865 1.21563 1.42433 0.94619 0.98596 0.91833 1.25940 0.95384 0.96830 1.01121 1.70133 1.44240 1.16347 1.24682 0.85506 0.77512 0.79717 0.78930 1.18187 1.20984 1.20944 1.21556 0.98620 0.91150 0.86772 1.21642 0.85374 1.05506 1.02322 1.23984 0.91547 0.73231 0.79421 1.90676 1.80036 1.41945 1.30289 1.84492 1.23856 1.75720 1.48978 0.93556 0.91839 0.91414 0.89883 0.93407 0.91596 0.93390 0.92625 0.91103 0.94269 0.92087 0.75293 0.87893 0.90118 0.93312 0.87399 0.92359 0.93025 0.93307 0.94790 0.90988 0.86040 0.83876 0.71615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.97 71.98 0.65 -0.88 16 2 C -0.09 -1.07 2.80 -10.79 -0.03 -1.10 16 3 C -0.15 -1.87 9.19 71.98 0.66 -1.20 16 4 C -0.12 -2.07 3.89 30.59 0.12 -1.95 16 5 C -0.07 -1.20 2.07 -10.80 -0.02 -1.22 16 6 H 0.12 1.38 6.35 -2.39 -0.02 1.36 16 7 C 0.13 3.66 4.86 86.38 0.42 4.08 16 8 N -0.73 -21.31 5.24 -478.53 -2.51 -23.82 16 9 C 0.69 29.83 8.30 179.05 1.49 31.32 16 10 O -0.64 -36.29 15.74 -3.99 -0.06 -36.35 16 11 N -0.63 -25.77 2.97 -836.91 -2.49 -28.26 16 12 C 0.11 2.95 6.38 86.36 0.55 3.50 16 13 C -0.13 -3.55 6.09 30.68 0.19 -3.36 16 14 C -0.10 -4.03 5.10 30.63 0.16 -3.88 16 15 C 0.04 1.96 2.26 -11.46 -0.03 1.93 16 16 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 17 C -0.53 -29.98 8.56 25.60 0.22 -29.76 16 18 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 19 C 0.01 0.37 5.30 84.65 0.45 0.82 16 20 N -0.92 -57.77 11.39 21.44 0.24 -57.53 16 21 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 C 0.14 7.36 5.41 86.36 0.47 7.83 16 26 C -0.11 -1.27 5.23 29.84 0.16 -1.11 16 27 C 0.47 8.37 7.68 71.23 0.55 8.91 16 28 O -0.54 -13.95 12.15 21.96 0.27 -13.68 16 29 O -0.52 -6.81 13.42 -51.37 -0.69 -7.50 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.56 6.47 -2.39 -0.02 0.54 16 33 H 0.08 0.72 6.36 -2.39 -0.02 0.71 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.07 1.54 5.41 -2.39 -0.01 1.52 16 39 H 0.04 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.06 2.09 5.43 -2.39 -0.01 2.08 16 41 H 0.41 8.04 4.98 -92.71 -0.46 7.57 16 42 H 0.10 1.86 5.64 -2.38 -0.01 1.85 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 49 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.07 4.53 5.11 -2.39 -0.01 4.52 16 51 H 0.12 1.03 7.05 -2.38 -0.02 1.01 16 52 H 0.14 0.72 6.52 -2.38 -0.02 0.70 16 53 H 0.42 2.96 9.10 -74.06 -0.67 2.29 16 Total: -1.00 -86.30 402.29 2.57 -83.74 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.21 Total: 22.06 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.99 Total: 13.93 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -4.75 Total: -109.61 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -0.49 Total: -57.54 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -86.30 2.57 -83.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588890425.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.976 kcal (2) G-P(sol) polarization free energy of solvation -86.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds