Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46797 * 2 1 4 4 C 1.50700 * 109.47097 * 119.99757 * 2 1 3 5 5 O 1.21281 * 119.99657 * 120.00341 * 4 2 1 6 6 N 1.34778 * 119.99820 * 299.72814 * 4 2 1 7 7 C 1.46503 * 119.99504 * 175.53656 * 6 4 2 8 8 C 1.52998 * 112.94636 * 302.89178 * 7 6 4 9 9 C 1.53002 * 109.47284 * 303.84425 * 8 7 6 10 10 O 1.42896 * 109.47029 * 175.21453 * 9 8 7 11 11 C 1.53947 * 113.73911 * 171.30346 * 7 6 4 12 12 N 1.47807 * 86.03605 * 222.08472 * 11 7 6 13 13 C 1.36940 * 134.45755 * 204.64063 * 12 11 7 14 14 H 1.07995 * 120.00083 * 179.86262 * 13 12 11 15 15 C 1.38812 * 119.99799 * 359.87437 * 13 12 11 16 16 N 1.31621 * 120.00060 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00063 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47320 * 59.99491 * 17 15 13 19 19 H 1.48498 * 109.47281 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46926 * 299.99840 * 17 15 13 21 21 C 1.47573 * 91.05176 * 24.55007 * 12 11 7 22 22 C 1.52997 * 109.47089 * 239.99983 * 2 1 3 23 23 C 1.53179 * 109.54089 * 179.81749 * 22 2 1 24 24 C 1.53110 * 109.15684 * 183.23837 * 23 22 2 25 25 O 1.42906 * 109.48114 * 57.48054 * 24 23 22 26 26 C 1.42897 * 114.09688 * 298.88449 * 25 24 23 27 27 C 1.53092 * 109.41632 * 61.16198 * 26 25 24 28 28 H 1.08997 * 109.46949 * 300.00161 * 1 2 3 29 29 H 1.08998 * 109.46935 * 60.00487 * 1 2 3 30 30 H 1.09004 * 109.46820 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47363 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47264 * 299.99927 * 3 2 1 33 33 H 1.08998 * 109.47030 * 59.99951 * 3 2 1 34 34 H 0.96997 * 120.00016 * 355.53258 * 6 4 2 35 35 H 1.09004 * 109.46564 * 63.84531 * 8 7 6 36 36 H 1.08992 * 109.47064 * 183.84050 * 8 7 6 37 37 H 1.08999 * 109.46532 * 295.21077 * 9 8 7 38 38 H 1.08998 * 109.46753 * 55.21269 * 9 8 7 39 39 H 0.96699 * 114.00418 * 180.02562 * 10 9 8 40 40 H 1.09007 * 113.76884 * 336.35189 * 11 7 6 41 41 H 1.08993 * 113.77134 * 107.74315 * 11 7 6 42 42 H 0.96995 * 120.00070 * 180.02562 * 16 15 13 43 43 H 1.09006 * 113.76949 * 221.15202 * 21 12 11 44 44 H 1.09005 * 113.87772 * 89.76913 * 21 12 11 45 45 H 1.08992 * 109.54433 * 299.99589 * 22 2 1 46 46 H 1.08990 * 109.52638 * 303.05965 * 23 22 2 47 47 H 1.09008 * 109.51910 * 63.24986 * 23 22 2 48 48 H 1.08997 * 109.40542 * 297.50141 * 24 23 22 49 49 H 1.08996 * 109.48833 * 177.51313 * 24 23 22 50 50 H 1.09003 * 109.48313 * 301.17689 * 26 25 24 51 51 H 1.08999 * 109.48803 * 181.15091 * 26 25 24 52 52 H 1.09000 * 109.52237 * 182.48403 * 27 26 25 53 53 H 1.09002 * 109.51927 * 62.29857 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7113 -0.2466 2.4546 7 6 2.1168 -0.9911 3.6494 8 6 1.6009 -2.4314 3.6585 9 6 0.0777 -2.4285 3.5139 10 8 -0.3935 -3.7736 3.4104 11 6 1.8652 -0.2343 4.9662 12 7 3.1936 -0.7291 5.3849 13 6 3.7915 -0.9659 6.5939 14 1 4.8034 -1.3413 6.6316 15 6 3.0967 -0.7237 7.7710 16 7 1.8635 -0.2659 7.7251 17 14 3.9120 -1.0474 9.4203 18 1 5.1304 -0.2075 9.5435 19 1 2.9663 -0.7104 10.5145 20 1 4.2875 -2.4811 9.5139 21 6 3.6158 -0.8675 3.9777 22 6 2.0401 -0.7212 -1.2492 23 6 3.5718 -0.7182 -1.2531 24 6 4.0723 -1.3698 -2.5451 25 8 3.5402 -0.6675 -3.6702 26 6 2.1132 -0.6791 -3.7437 27 6 1.5341 0.0021 -2.5010 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.2118 0.5800 2.5444 35 1 2.0437 -2.9811 2.8278 36 1 1.8758 -2.9099 4.5984 37 1 -0.3691 -1.9532 4.3872 38 1 -0.2010 -1.8758 2.6168 39 1 -1.3529 -3.8481 3.3157 40 1 1.8166 0.8483 4.8484 41 1 1.0400 -0.6369 5.5535 42 1 1.3782 -0.0963 8.5476 43 1 4.1857 -1.7748 3.7771 44 1 4.0831 0.0277 3.5671 45 1 1.6775 -1.7491 -1.2504 46 1 3.9342 0.3083 -1.2003 47 1 3.9394 -1.2799 -0.3942 48 1 3.7447 -2.4089 -2.5771 49 1 5.1612 -1.3309 -2.5739 50 1 1.7600 -1.7092 -3.7915 51 1 1.7907 -0.1426 -4.6360 52 1 0.4456 -0.0448 -2.5339 53 1 1.8540 1.0438 -2.4743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675085121.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -112.892105 kcal Electronic energy + Delta-G solvation = -32494.392496 eV Core-core repulsion = 28366.534868 eV Total energy + Delta-G solvation = -4127.857628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.97445 -40.61653 -39.24633 -37.72088 -36.87587 -35.31293 -33.90239 -32.45659 -31.99032 -31.50887 -29.00223 -28.29142 -26.85490 -26.17759 -25.44957 -24.48348 -23.77456 -23.08701 -21.39631 -20.16978 -19.81576 -18.78025 -18.45182 -17.76860 -17.18208 -16.96229 -16.85199 -16.69473 -16.37490 -15.99366 -15.74587 -15.71356 -15.39303 -15.06097 -15.00484 -14.63863 -14.42157 -14.37879 -13.80137 -13.50668 -13.36835 -13.24280 -13.15965 -13.01894 -12.83836 -12.76982 -12.74745 -12.60438 -12.55932 -12.29655 -12.17161 -12.06228 -11.81837 -11.74696 -11.61970 -11.50487 -11.40965 -11.02491 -10.95137 -10.86783 -10.46105 -10.19799 -9.91645 -8.97170 -7.94383 -5.27251 1.44733 1.47584 1.53439 1.77103 2.16400 2.49021 3.02253 3.13841 3.25243 3.36880 3.57868 3.63238 3.71627 3.78287 4.10304 4.12324 4.15935 4.19442 4.27081 4.27569 4.33644 4.35603 4.44282 4.47187 4.66156 4.70208 4.70591 4.74530 4.79346 4.83104 4.83356 4.91281 4.93083 4.95124 5.02259 5.05978 5.12504 5.13520 5.16867 5.18012 5.21655 5.27569 5.33837 5.46090 5.46980 5.56400 5.76050 5.88597 6.31924 6.70774 6.89089 6.89256 7.41580 7.55494 8.48950 9.22208 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.002963 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.993274 B = 9448.303772 C = 9967.440661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.145 4.145 4 C 0.520 3.480 5 O -0.564 6.564 6 N -0.705 5.705 7 C 0.159 3.841 8 C -0.089 4.089 9 C 0.094 3.906 10 O -0.592 6.592 11 C 0.172 3.828 12 N -0.631 5.631 13 C -0.239 4.239 14 H 0.078 0.922 15 C -0.057 4.057 16 N -0.946 5.946 17 Si 0.977 3.023 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.123 3.877 22 C -0.059 4.059 23 C -0.160 4.160 24 C 0.064 3.936 25 O -0.403 6.403 26 C 0.053 3.947 27 C -0.146 4.146 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.410 0.590 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.396 0.604 40 H 0.034 0.966 41 H 0.057 0.943 42 H 0.251 0.749 43 H 0.036 0.964 44 H 0.042 0.958 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.094 0.906 50 H 0.049 0.951 51 H 0.111 0.889 52 H 0.097 0.903 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 3.671 -22.268 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.202 4.202 4 C 0.308 3.692 5 O -0.443 6.443 6 N -0.357 5.357 7 C 0.071 3.929 8 C -0.128 4.128 9 C 0.016 3.984 10 O -0.400 6.400 11 C 0.046 3.954 12 N -0.358 5.358 13 C -0.368 4.368 14 H 0.096 0.904 15 C -0.250 4.250 16 N -0.594 5.594 17 Si 0.805 3.195 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.206 1.206 21 C -0.004 4.004 22 C -0.078 4.078 23 C -0.197 4.197 24 C -0.012 4.012 25 O -0.322 6.322 26 C -0.023 4.023 27 C -0.183 4.183 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.247 0.753 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.246 0.754 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.112 0.888 50 H 0.067 0.933 51 H 0.129 0.871 52 H 0.115 0.885 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.548 2.915 -22.073 23.208 hybrid contribution -0.124 0.078 1.707 1.713 sum -6.672 2.993 -20.366 21.640 Atomic orbital electron populations 1.21952 0.90685 1.02735 1.04481 1.20785 0.98359 0.96772 0.91110 1.22015 1.01239 0.92772 1.04171 1.21171 0.79014 0.84081 0.84970 1.90610 1.38415 1.28417 1.86839 1.45999 1.58055 1.27147 1.04522 1.22125 0.94350 0.91926 0.84476 1.21173 0.95445 0.94614 1.01562 1.21933 0.93475 0.83047 0.99903 1.86440 1.29068 1.27594 1.96923 1.22454 0.89458 0.95047 0.88395 1.45962 1.13827 1.75871 1.00125 1.19265 0.97605 1.37120 0.82763 0.90439 1.25529 0.97237 1.01619 1.00665 1.69926 1.11141 1.51300 1.27036 0.85188 0.77316 0.77973 0.79052 1.20442 1.21501 1.20633 1.22922 0.95255 0.98003 0.84192 1.20903 0.94823 0.98811 0.93253 1.22445 0.96548 1.01918 0.98785 1.22550 0.99011 0.94566 0.85113 1.87880 1.21892 1.76055 1.46395 1.22772 0.80074 1.00407 0.99027 1.22361 1.02159 1.00661 0.93155 0.91010 0.88762 0.92848 0.93101 0.88986 0.91221 0.75251 0.91412 0.93394 0.93783 0.92067 0.75446 0.94825 0.92488 0.93959 0.94541 0.94006 0.92233 0.91394 0.90768 0.93652 0.88808 0.93275 0.87130 0.88474 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.03 71.98 0.58 -1.28 16 2 C -0.07 -1.22 0.43 -52.93 -0.02 -1.24 16 3 C -0.14 -2.21 7.67 71.98 0.55 -1.66 16 4 C 0.52 14.08 5.80 87.66 0.51 14.59 16 5 O -0.56 -19.74 11.87 -3.03 -0.04 -19.78 16 6 N -0.70 -19.49 4.31 -427.57 -1.84 -21.34 16 7 C 0.16 5.94 0.68 5.36 0.00 5.95 16 8 C -0.09 -3.50 4.68 30.59 0.14 -3.35 16 9 C 0.09 2.98 6.86 71.98 0.49 3.47 16 10 O -0.59 -18.20 13.66 -148.98 -2.03 -20.23 16 11 C 0.17 7.73 6.69 86.44 0.58 8.31 16 12 N -0.63 -32.71 3.55 -715.57 -2.54 -35.25 16 13 C -0.24 -13.65 10.70 84.03 0.90 -12.76 16 14 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 15 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 16 N -0.95 -55.26 11.39 21.65 0.25 -55.01 16 17 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C 0.12 5.39 8.02 86.49 0.69 6.09 16 22 C -0.06 -1.13 1.27 -10.68 -0.01 -1.14 16 23 C -0.16 -3.64 4.78 30.69 0.15 -3.49 16 24 C 0.06 1.37 6.84 72.02 0.49 1.86 16 25 O -0.40 -8.54 10.77 -148.98 -1.60 -10.14 16 26 C 0.05 0.80 6.84 72.01 0.49 1.29 16 27 C -0.15 -1.92 4.70 30.68 0.14 -1.78 16 28 H 0.07 0.84 7.69 -2.39 -0.02 0.82 16 29 H 0.09 0.79 6.51 -2.39 -0.02 0.77 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.94 6.36 -2.39 -0.02 0.93 16 32 H 0.09 1.00 6.36 -2.39 -0.02 0.98 16 33 H 0.07 0.96 7.45 -2.39 -0.02 0.94 16 34 H 0.41 9.07 7.53 -92.71 -0.70 8.38 16 35 H 0.07 2.82 6.55 -2.39 -0.02 2.80 16 36 H 0.05 2.24 8.02 -2.39 -0.02 2.22 16 37 H 0.04 1.44 7.59 -2.39 -0.02 1.42 16 38 H 0.06 1.63 7.47 -2.39 -0.02 1.61 16 39 H 0.40 7.52 9.12 -74.06 -0.68 6.85 16 40 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.06 2.85 6.57 -2.39 -0.02 2.83 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 43 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 44 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 46 H 0.07 1.51 6.28 -2.39 -0.02 1.49 16 47 H 0.07 2.17 5.62 -2.38 -0.01 2.15 16 48 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.10 0.87 6.63 -2.39 -0.02 0.85 16 53 H 0.08 1.02 6.28 -2.39 -0.01 1.00 16 Total: -1.00 -73.06 397.26 -0.07 -73.14 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.45 Total: 28.68 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.16 Total: 12.11 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.13 Total: -111.60 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -3.67 Total: -50.15 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.06 -0.07 -73.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675085121.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.756 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds