Wall clock time and date at job start Sat Apr 11 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34225 * 116.99940 * 2 1 4 4 O 1.20826 * 120.00300 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47064 * 59.99515 * 5 3 2 7 7 C 1.53006 * 109.46976 * 299.99861 * 5 3 2 8 8 C 1.52998 * 109.47049 * 180.02562 * 5 3 2 9 9 H 1.08999 * 109.49555 * 299.93294 * 8 5 3 10 10 C 1.53032 * 109.50248 * 59.99932 * 8 5 3 11 11 C 1.53039 * 109.54002 * 181.34837 * 10 8 5 12 12 C 1.53187 * 109.31301 * 298.63530 * 11 10 8 13 13 N 1.46928 * 108.77730 * 54.63266 * 12 11 10 14 14 C 1.34776 * 120.62874 * 126.36878 * 13 12 11 15 15 O 1.21588 * 119.99890 * 185.22993 * 14 13 12 16 16 N 1.34768 * 120.00360 * 5.23095 * 14 13 12 17 17 C 1.46504 * 120.00353 * 175.29509 * 16 14 13 18 18 C 1.52993 * 109.47321 * 179.72443 * 17 16 14 19 19 C 1.53000 * 109.47432 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47698 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99560 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00371 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00244 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99686 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47509 * 89.99537 * 24 22 20 26 26 H 1.48507 * 109.46724 * 209.99898 * 24 22 20 27 27 H 1.48497 * 109.47013 * 329.99169 * 24 22 20 28 28 C 1.46926 * 118.73872 * 306.64722 * 13 12 11 29 29 H 1.09004 * 109.47098 * 60.00016 * 1 2 3 30 30 H 1.09006 * 109.47346 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47624 * 300.00198 * 1 2 3 32 32 H 1.09000 * 109.46861 * 179.97438 * 6 5 3 33 33 H 1.08992 * 109.47470 * 300.00851 * 6 5 3 34 34 H 1.09003 * 109.46501 * 60.00367 * 6 5 3 35 35 H 1.08996 * 109.47114 * 300.00191 * 7 5 3 36 36 H 1.09002 * 109.47131 * 59.99708 * 7 5 3 37 37 H 1.08997 * 109.47057 * 179.97438 * 7 5 3 38 38 H 1.09004 * 109.46152 * 61.32724 * 10 8 5 39 39 H 1.09003 * 109.45836 * 301.37137 * 10 8 5 40 40 H 1.09004 * 109.49826 * 178.68011 * 11 10 8 41 41 H 1.08999 * 109.52273 * 58.60011 * 11 10 8 42 42 H 1.09006 * 109.58876 * 294.84336 * 12 11 10 43 43 H 1.08998 * 109.59053 * 174.42238 * 12 11 10 44 44 H 0.97009 * 119.99885 * 355.01222 * 16 14 13 45 45 H 1.09003 * 109.46867 * 299.72054 * 17 16 14 46 46 H 1.09000 * 109.46688 * 59.72276 * 17 16 14 47 47 H 1.09008 * 109.47523 * 299.99675 * 18 17 16 48 48 H 1.08997 * 109.47786 * 59.99611 * 18 17 16 49 49 H 1.09008 * 109.46908 * 300.00025 * 19 18 17 50 50 H 1.08998 * 109.47496 * 59.99296 * 19 18 17 51 51 H 0.96997 * 120.00174 * 180.02562 * 23 22 20 52 52 H 1.09000 * 109.58564 * 173.14188 * 28 13 12 53 53 H 1.09004 * 109.58305 * 293.56850 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1138 0.5810 -1.2482 7 6 4.1128 0.5816 1.2503 8 6 4.0000 2.7421 0.0011 9 1 3.6118 3.2365 -0.8894 10 6 3.4527 3.4362 1.2503 11 6 3.8577 4.9119 1.2348 12 6 5.3858 5.0181 1.2531 13 7 5.9279 4.2318 0.1365 14 6 6.7739 4.7919 -0.7507 15 8 7.1408 4.1605 -1.7228 16 7 7.2131 6.0517 -0.5604 17 6 8.2113 6.6243 -1.4670 18 6 8.5291 8.0575 -1.0362 19 6 9.5711 8.6557 -1.9834 20 6 9.8837 10.0676 -1.5594 21 1 9.3882 10.4957 -0.7005 22 6 10.8021 10.8130 -2.2679 23 7 11.0744 12.0453 -1.8982 24 14 11.6584 10.0727 -3.7540 25 1 10.8610 10.3522 -4.9751 26 1 13.0093 10.6730 -3.8967 27 1 11.7860 8.6046 -3.5713 28 6 5.5254 2.8252 0.0021 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 5.2023 0.6385 -1.2480 33 1 3.8047 -0.4642 -1.2482 34 1 3.7244 1.0749 -2.1385 35 1 3.7227 1.0758 2.1399 36 1 3.8037 -0.4637 1.2504 37 1 5.2013 0.6382 1.2505 38 1 3.8608 2.9570 2.1403 39 1 2.3655 3.3581 1.2622 40 1 3.4478 5.4110 2.1130 41 1 3.4709 5.3864 0.3330 42 1 5.7682 4.6261 2.1956 43 1 5.6810 6.0615 1.1424 44 1 6.8652 6.5808 0.1744 45 1 9.1207 6.0243 -1.4318 46 1 7.8183 6.6291 -2.4837 47 1 7.6198 8.6576 -1.0714 48 1 8.9220 8.0527 -0.0195 49 1 10.4806 8.0557 -1.9486 50 1 9.1779 8.6606 -2.9999 51 1 11.7203 12.5697 -2.3969 52 1 5.9126 2.4222 -0.9338 53 1 5.9193 2.2507 0.8405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091743137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:32 Heat of formation + Delta-G solvation = -149.579125 kcal Electronic energy + Delta-G solvation = -30586.820942 eV Core-core repulsion = 26457.372446 eV Total energy + Delta-G solvation = -4129.448496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23964 -41.29759 -39.35144 -37.51542 -36.97936 -36.53929 -35.13096 -33.59029 -33.00909 -30.99334 -28.96704 -28.64650 -28.39631 -26.44086 -25.42720 -24.49753 -23.49566 -22.28791 -22.14208 -20.75477 -19.99523 -19.28366 -18.76799 -18.32611 -17.69822 -17.40144 -17.20078 -16.86890 -16.31707 -15.94212 -15.61068 -15.52344 -15.45735 -15.14640 -14.92333 -14.77181 -14.59217 -14.35733 -14.17372 -13.83334 -13.75784 -13.63427 -13.53589 -13.36174 -12.88300 -12.79098 -12.75381 -12.71694 -12.61123 -12.32791 -12.16175 -11.91278 -11.85379 -11.75981 -11.68978 -11.59056 -11.54401 -11.32581 -11.30035 -11.17368 -11.00117 -10.75451 -10.20710 -9.46562 -8.28637 -6.32376 1.12945 1.37714 1.39030 1.51073 1.53543 1.78309 2.11259 2.37118 2.92345 3.07158 3.39936 3.62168 3.65248 3.90665 3.96027 4.08941 4.10927 4.12863 4.18070 4.22452 4.29295 4.31352 4.34596 4.50218 4.54248 4.63261 4.67969 4.72647 4.74811 4.79830 4.81211 4.88075 4.90779 4.93112 4.96709 5.00357 5.04541 5.07443 5.18501 5.21805 5.29291 5.41973 5.44111 5.49989 5.51812 5.56815 5.57958 5.66419 5.92715 6.28292 6.70284 6.75308 6.94573 7.32388 7.53263 8.87663 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027184 B = 0.001862 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.777394 B =15031.627593 C =15407.324412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.529 6.529 5 C -0.042 4.042 6 C -0.146 4.146 7 C -0.145 4.145 8 C -0.075 4.075 9 H 0.051 0.949 10 C -0.123 4.123 11 C -0.128 4.128 12 C 0.105 3.895 13 N -0.625 5.625 14 C 0.700 3.300 15 O -0.635 6.635 16 N -0.735 5.735 17 C 0.146 3.854 18 C -0.099 4.099 19 C -0.012 4.012 20 C -0.530 4.530 21 H 0.038 0.962 22 C 0.005 3.995 23 N -0.950 5.950 24 Si 0.946 3.054 25 H -0.269 1.269 26 H -0.284 1.284 27 H -0.247 1.247 28 C 0.133 3.867 29 H 0.056 0.944 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.407 0.593 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.022 0.978 50 H 0.018 0.982 51 H 0.266 0.734 52 H 0.080 0.920 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.170 -29.954 10.268 38.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.418 6.418 5 C -0.044 4.044 6 C -0.203 4.203 7 C -0.202 4.202 8 C -0.095 4.095 9 H 0.070 0.930 10 C -0.161 4.161 11 C -0.167 4.167 12 C -0.017 4.017 13 N -0.362 5.362 14 C 0.401 3.599 15 O -0.517 6.517 16 N -0.392 5.392 17 C 0.022 3.978 18 C -0.137 4.137 19 C -0.050 4.050 20 C -0.568 4.568 21 H 0.056 0.944 22 C -0.192 4.192 23 N -0.590 5.590 24 Si 0.770 3.230 25 H -0.194 1.194 26 H -0.210 1.210 27 H -0.171 1.171 28 C 0.010 3.990 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.246 0.754 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.041 0.959 50 H 0.037 0.963 51 H 0.075 0.925 52 H 0.098 0.902 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.013 -29.969 9.548 37.826 hybrid contribution -0.104 0.985 -0.634 1.176 sum -21.117 -28.983 8.914 36.951 Atomic orbital electron populations 1.23528 0.75124 1.05636 1.02320 1.86494 1.24595 1.32756 1.83541 1.24045 0.92351 0.81140 0.71027 1.90616 1.67869 1.37077 1.46247 1.20514 0.85997 0.97058 1.00819 1.21962 1.02751 1.01292 0.94281 1.22045 1.02945 1.01153 0.94047 1.21224 0.95359 0.93128 0.99790 0.92992 1.21844 1.02065 0.95120 0.97032 1.21862 0.94720 0.97220 1.02860 1.21924 0.94212 0.96002 0.89558 1.47289 1.47590 1.12800 1.28527 1.16046 0.79613 0.81799 0.82411 1.90861 1.64598 1.64211 1.32009 1.45262 1.45754 1.13423 1.34795 1.21149 0.90409 0.93644 0.92618 1.21471 0.99384 0.92800 1.00033 1.19462 0.95460 0.94244 0.95807 1.21459 1.23345 0.98396 1.13634 0.94385 1.25970 0.97384 0.95032 1.00792 1.70053 1.35821 1.10722 1.42443 0.85710 0.77817 0.80102 0.79362 1.19389 1.20959 1.17066 1.21608 0.93080 0.80454 1.03853 0.92507 0.85084 0.91887 0.89725 0.89709 0.93368 0.91121 0.90122 0.89173 0.89658 0.90801 0.88523 0.93471 0.88668 0.89819 0.75389 0.92470 0.92969 0.91968 0.91553 0.95918 0.96321 0.92527 0.90189 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.55 113.37 1.20 1.45 16 2 O -0.36 -5.05 10.37 -51.37 -0.53 -5.59 16 3 C 0.47 8.03 6.26 71.24 0.45 8.48 16 4 O -0.53 -12.03 13.41 21.96 0.29 -11.73 16 5 C -0.04 -0.56 0.52 -52.92 -0.03 -0.59 16 6 C -0.15 -1.84 8.06 71.98 0.58 -1.26 16 7 C -0.15 -1.17 7.71 71.98 0.55 -0.61 16 8 C -0.08 -1.27 1.32 -10.86 -0.01 -1.28 16 9 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 10 C -0.12 -1.81 4.47 30.62 0.14 -1.68 16 11 C -0.13 -1.87 6.08 30.67 0.19 -1.69 16 12 C 0.11 1.56 6.39 86.36 0.55 2.11 16 13 N -0.63 -13.47 2.98 -837.74 -2.50 -15.96 16 14 C 0.70 20.96 8.30 179.06 1.49 22.45 16 15 O -0.63 -24.23 15.77 -3.99 -0.06 -24.29 16 16 N -0.73 -20.53 5.46 -478.55 -2.62 -23.15 16 17 C 0.15 4.86 5.68 86.38 0.49 5.35 16 18 C -0.10 -3.64 5.27 30.59 0.16 -3.48 16 19 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 20 C -0.53 -30.29 9.66 25.60 0.25 -30.05 16 21 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 22 C 0.01 0.30 5.47 84.66 0.46 0.76 16 23 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 24 Si 0.95 44.71 27.47 68.60 1.88 46.59 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 27 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 28 C 0.13 2.38 4.97 86.22 0.43 2.81 16 29 H 0.06 0.62 8.13 -2.38 -0.02 0.60 16 30 H 0.13 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.08 0.99 6.57 -2.39 -0.02 0.98 16 33 H 0.08 0.84 8.11 -2.39 -0.02 0.82 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.52 6.46 -2.39 -0.02 0.51 16 36 H 0.08 0.53 8.11 -2.39 -0.02 0.51 16 37 H 0.09 0.53 6.32 -2.39 -0.02 0.52 16 38 H 0.08 0.89 6.50 -2.38 -0.02 0.88 16 39 H 0.07 1.36 5.49 -2.39 -0.01 1.35 16 40 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.08 1.18 5.65 -2.39 -0.01 1.16 16 44 H 0.41 9.10 5.96 -92.70 -0.55 8.55 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 48 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.02 1.03 7.20 -2.38 -0.02 1.01 16 50 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 51 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 52 H 0.08 1.77 5.61 -2.39 -0.01 1.76 16 53 H 0.10 1.22 6.16 -2.38 -0.01 1.20 16 Total: -1.00 -77.42 404.58 4.07 -73.35 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.29 Total: 17.66 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 7.01 Total: 2.36 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -4.81 Total: -98.35 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.30 Total: -41.61 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -77.42 4.07 -73.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091743137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.231 kcal (2) G-P(sol) polarization free energy of solvation -77.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds