Wall clock time and date at job start Sat Apr 11 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46889 * 2 1 4 4 C 1.53001 * 109.46913 * 240.00864 * 2 1 3 5 5 C 1.50695 * 109.47291 * 120.00394 * 2 1 3 6 6 O 1.21277 * 119.99801 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99987 * 180.02562 * 5 2 1 8 8 C 1.46500 * 120.00141 * 180.02562 * 7 5 2 9 9 C 1.52998 * 109.47445 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47293 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47180 * 180.02562 * 10 9 8 12 12 O 1.20828 * 119.99942 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00263 * 180.02562 * 11 10 9 14 14 C 1.45199 * 117.00292 * 179.97438 * 13 11 10 15 15 C 1.53081 * 109.43946 * 89.79071 * 14 13 11 16 16 C 1.53190 * 109.29209 * 181.23715 * 15 14 13 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45992 * 209.99546 * 14 13 11 28 28 H 1.09001 * 109.47211 * 300.00045 * 1 2 3 29 29 H 1.08999 * 109.47526 * 59.99282 * 1 2 3 30 30 H 1.09002 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46869 * 180.02562 * 3 2 1 32 32 H 1.08990 * 109.47272 * 300.00178 * 3 2 1 33 33 H 1.08994 * 109.46846 * 60.00511 * 3 2 1 34 34 H 1.09003 * 109.46533 * 299.99203 * 4 2 1 35 35 H 1.08990 * 109.47711 * 59.99538 * 4 2 1 36 36 H 1.09000 * 109.46964 * 179.97438 * 4 2 1 37 37 H 0.97007 * 120.00209 * 359.97438 * 7 5 2 38 38 H 1.09002 * 109.47280 * 59.98990 * 8 7 5 39 39 H 1.09002 * 109.46803 * 299.99093 * 8 7 5 40 40 H 1.09002 * 109.47305 * 59.99497 * 9 8 7 41 41 H 1.09001 * 109.47201 * 300.00244 * 9 8 7 42 42 H 1.08997 * 109.46930 * 60.00119 * 10 9 8 43 43 H 1.09002 * 109.47122 * 299.99686 * 10 9 8 44 44 H 1.08998 * 109.45943 * 329.97028 * 14 13 11 45 45 H 1.08992 * 109.38800 * 61.36134 * 15 14 13 46 46 H 1.09002 * 109.61927 * 301.25413 * 15 14 13 47 47 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 48 48 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 49 49 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 51 51 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 52 52 H 1.09002 * 109.49848 * 58.67820 * 27 14 13 53 53 H 1.09002 * 109.52425 * 298.59293 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0323 -0.7105 1.2304 6 8 1.2442 -1.1710 2.0289 7 7 3.3574 -0.8331 1.4438 8 6 3.8458 -1.5243 2.6397 9 6 5.3758 -1.5242 2.6397 10 6 5.8858 -2.2455 3.8889 11 6 7.3928 -2.2448 3.8893 12 8 7.9969 -1.7215 2.9831 13 8 8.0641 -2.8264 4.8957 14 6 9.5141 -2.7882 4.8300 15 6 10.0224 -1.5223 5.5247 16 6 11.5502 -1.4699 5.4264 17 7 12.1047 -2.7201 5.9631 18 6 13.0582 -2.6954 6.9457 19 1 13.1476 -3.5241 7.6325 20 6 13.9100 -1.6052 7.0589 21 7 14.5327 -1.3717 8.1948 22 14 14.1724 -0.4693 5.5994 23 1 13.2151 0.6634 5.6752 24 1 15.5618 0.0543 5.6231 25 1 13.9489 -1.2228 4.3393 26 6 11.6171 -3.9975 5.4253 27 6 10.0887 -4.0238 5.5265 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7207 -1.2496 37 1 3.9878 -0.4644 0.8053 38 1 3.4828 -2.5521 2.6390 39 1 3.4821 -1.0111 3.5299 40 1 5.7391 -0.4965 2.6402 41 1 5.7392 -2.0375 1.7495 42 1 5.5226 -3.2731 3.8888 43 1 5.5225 -1.7317 4.7789 44 1 9.8302 -2.7794 3.7869 45 1 9.7257 -1.5411 6.5733 46 1 9.5963 -0.6433 5.0412 47 1 11.9249 -0.6258 6.0054 48 1 11.8457 -1.3573 4.3832 49 1 15.1276 -0.6097 8.2740 50 1 11.9158 -4.0923 4.3812 51 1 12.0378 -4.8213 6.0020 52 1 9.7076 -4.9237 5.0438 53 1 9.7935 -4.0208 6.5758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121017737.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:36 Heat of formation + Delta-G solvation = -149.359893 kcal Electronic energy + Delta-G solvation = -29563.730879 eV Core-core repulsion = 25434.291889 eV Total energy + Delta-G solvation = -4129.438990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.70530 -41.16983 -39.39545 -37.56979 -36.85550 -36.49541 -34.65916 -33.75192 -32.38763 -32.08394 -28.86635 -28.22903 -27.92293 -26.93163 -24.64647 -24.49737 -23.61441 -22.81395 -21.58009 -21.20829 -20.20083 -18.95490 -18.79951 -17.79338 -17.64425 -17.46472 -17.16924 -16.64533 -16.60039 -16.00897 -15.70860 -15.45424 -15.28479 -15.00335 -14.84957 -14.70691 -14.42500 -14.38810 -14.26929 -13.83757 -13.57236 -13.39958 -13.38618 -13.24832 -13.06820 -12.87340 -12.86483 -12.63543 -12.59914 -12.55036 -12.32739 -12.17853 -12.07966 -11.96383 -11.90409 -11.85634 -11.68557 -11.61023 -11.43331 -11.11249 -10.75064 -10.72359 -10.11908 -9.03073 -8.19539 -5.52493 1.20720 1.26944 1.38592 1.46859 1.60902 1.61430 2.23632 2.38156 2.99390 3.26690 3.52603 3.60746 3.68837 3.75976 3.82353 3.91191 3.91868 3.96375 4.06025 4.11423 4.20992 4.29968 4.36491 4.48438 4.55680 4.55703 4.68166 4.69185 4.71163 4.71653 4.78356 4.81758 4.83363 4.89268 4.94076 4.94314 5.00273 5.01099 5.04951 5.07571 5.14461 5.23047 5.30629 5.32450 5.32889 5.43486 5.60842 5.83121 6.10160 6.50587 6.74430 6.85682 7.21545 7.56690 7.96992 8.99878 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024758 B = 0.001690 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.677711 B =16568.012588 C =17130.105323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.516 3.484 6 O -0.586 6.586 7 N -0.720 5.720 8 C 0.122 3.878 9 C -0.110 4.110 10 C -0.105 4.105 11 C 0.455 3.545 12 O -0.540 6.540 13 O -0.354 6.354 14 C 0.103 3.897 15 C -0.139 4.139 16 C 0.126 3.874 17 N -0.620 5.620 18 C -0.250 4.250 19 H 0.059 0.941 20 C -0.031 4.031 21 N -0.953 5.953 22 Si 0.940 3.060 23 H -0.277 1.277 24 H -0.308 1.308 25 H -0.262 1.262 26 C 0.145 3.855 27 C -0.118 4.118 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.033 0.967 49 H 0.262 0.738 50 H 0.040 0.960 51 H 0.074 0.926 52 H 0.097 0.903 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.970 1.493 -20.083 34.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 C -0.197 4.197 4 C -0.196 4.196 5 C 0.304 3.696 6 O -0.465 6.465 7 N -0.372 5.372 8 C -0.002 4.002 9 C -0.147 4.147 10 C -0.143 4.143 11 C 0.300 3.700 12 O -0.430 6.430 13 O -0.271 6.271 14 C 0.049 3.951 15 C -0.178 4.178 16 C 0.001 3.999 17 N -0.344 5.344 18 C -0.380 4.380 19 H 0.077 0.923 20 C -0.226 4.226 21 N -0.599 5.599 22 Si 0.769 3.231 23 H -0.204 1.204 24 H -0.236 1.236 25 H -0.187 1.187 26 C 0.020 3.980 27 C -0.157 4.157 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.250 0.750 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.058 0.942 51 H 0.092 0.908 52 H 0.115 0.885 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -28.180 1.369 -19.680 34.399 hybrid contribution 1.141 0.894 -0.281 1.476 sum -27.040 2.263 -19.961 33.685 Atomic orbital electron populations 1.21670 0.92392 1.02055 1.02418 1.20876 0.97797 0.97276 0.92923 1.21890 1.01939 0.92477 1.03379 1.21886 1.01951 1.00092 0.95696 1.21161 0.82088 0.78740 0.87614 1.90680 1.56516 1.50569 1.48776 1.45963 1.07075 1.58412 1.25756 1.21276 0.93070 0.97816 0.88015 1.21476 0.93381 1.02157 0.97735 1.21376 0.84590 1.06352 1.01935 1.24473 0.93115 0.73777 0.78615 1.90655 1.71562 1.43428 1.37353 1.86564 1.22220 1.71145 1.47167 1.22599 0.75598 0.96577 1.00365 1.22303 0.96567 0.97486 1.01437 1.21297 0.92340 0.89473 0.96822 1.44540 1.44555 1.01555 1.43792 1.18896 1.08515 1.05352 1.05203 0.92289 1.25862 0.97714 1.00216 0.98823 1.69956 1.33785 1.30810 1.25315 0.86018 0.75677 0.79344 0.82077 1.20401 1.23643 1.18693 1.21125 0.91744 0.87640 0.97492 1.22040 0.96018 0.96275 1.01375 0.93442 0.89781 0.93338 0.90986 0.89541 0.93033 0.92903 0.89562 0.90953 0.74996 0.91176 0.91482 0.90612 0.90199 0.84982 0.85523 0.90602 0.91421 0.91290 0.92624 0.94907 0.92881 0.94224 0.90790 0.88453 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 7.76 71.98 0.56 -0.98 16 2 C -0.09 -0.90 0.87 -52.93 -0.05 -0.94 16 3 C -0.14 -0.98 8.37 71.99 0.60 -0.38 16 4 C -0.14 -0.92 8.37 71.98 0.60 -0.32 16 5 C 0.52 8.57 6.48 87.66 0.57 9.13 16 6 O -0.59 -14.96 15.98 -3.02 -0.05 -15.01 16 7 N -0.72 -8.57 5.34 -463.07 -2.47 -11.04 16 8 C 0.12 1.47 5.67 86.38 0.49 1.96 16 9 C -0.11 -1.27 4.62 30.59 0.14 -1.13 16 10 C -0.10 -1.33 5.81 29.85 0.17 -1.16 16 11 C 0.46 10.50 7.93 71.24 0.56 11.06 16 12 O -0.54 -15.67 15.20 21.96 0.33 -15.34 16 13 O -0.35 -9.42 9.88 -51.42 -0.51 -9.93 16 14 C 0.10 3.21 2.41 30.63 0.07 3.28 16 15 C -0.14 -4.94 5.73 30.68 0.18 -4.76 16 16 C 0.13 5.43 4.20 86.36 0.36 5.79 16 17 N -0.62 -28.81 2.77 -699.09 -1.94 -30.75 16 18 C -0.25 -14.03 10.03 84.03 0.84 -13.18 16 19 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 20 C -0.03 -1.80 5.23 84.86 0.44 -1.36 16 21 N -0.95 -59.55 13.97 21.65 0.30 -59.25 16 22 Si 0.94 46.57 24.34 68.60 1.67 48.24 16 23 H -0.28 -13.09 6.62 99.48 0.66 -12.43 16 24 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 25 H -0.26 -12.51 6.64 99.48 0.66 -11.84 16 26 C 0.14 5.31 6.52 86.37 0.56 5.87 16 27 C -0.12 -3.56 5.75 30.67 0.18 -3.38 16 28 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 31 H 0.07 0.35 7.56 -2.39 -0.02 0.33 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.33 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.31 8.14 -2.39 -0.02 0.30 16 36 H 0.07 0.32 7.57 -2.39 -0.02 0.30 16 37 H 0.41 2.96 7.31 -92.70 -0.68 2.28 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 41 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 2.45 7.16 -2.39 -0.02 2.43 16 45 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.06 2.64 4.50 -2.39 -0.01 2.63 16 48 H 0.03 1.39 7.07 -2.38 -0.02 1.37 16 49 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 50 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 52 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 53 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -75.87 415.44 3.74 -72.14 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.10 Total: 11.43 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 6.29 Total: 9.51 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -4.11 Total: -101.04 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.22 Total: -40.28 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.67 Total: 48.24 kcal Total: -75.87 3.74 -72.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121017737.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.223 kcal (2) G-P(sol) polarization free energy of solvation -75.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds