Wall clock time and date at job start Sat Apr 11 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 C 1.53004 * 109.46595 * 239.99908 * 2 1 3 5 5 O 1.42903 * 109.47057 * 120.00362 * 2 1 3 6 6 C 1.42898 * 114.00084 * 65.35362 * 5 2 1 7 7 C 1.53354 * 109.41516 * 255.45882 * 6 5 2 8 8 C 1.53197 * 109.14521 * 178.67600 * 7 6 5 9 9 N 1.46927 * 108.89474 * 54.57923 * 8 7 6 10 10 C 1.34775 * 120.62964 * 126.34077 * 9 8 7 11 11 O 1.21348 * 120.00382 * 351.93077 * 10 9 8 12 12 C 1.49459 * 119.99587 * 171.93392 * 10 9 8 13 13 O 1.21347 * 120.00243 * 353.13922 * 12 10 9 14 14 N 1.34780 * 119.99502 * 173.14316 * 12 10 9 15 15 C 1.46506 * 119.99454 * 179.97438 * 14 12 10 16 16 C 1.52993 * 109.46867 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47161 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47174 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99735 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99803 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00190 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99878 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47558 * 89.99368 * 22 20 18 24 24 H 1.48507 * 109.47075 * 209.99765 * 22 20 18 25 25 H 1.48501 * 109.47031 * 329.99527 * 22 20 18 26 26 C 1.46926 * 118.73665 * 306.31913 * 9 8 7 27 27 C 1.53038 * 109.45911 * 135.33056 * 6 5 2 28 28 H 1.09007 * 109.47043 * 306.56050 * 1 2 3 29 29 H 1.08999 * 109.47484 * 66.56013 * 1 2 3 30 30 H 1.08997 * 109.47415 * 186.56485 * 1 2 3 31 31 H 1.08994 * 109.46898 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47229 * 300.00036 * 3 2 1 33 33 H 1.09004 * 109.47246 * 60.00009 * 3 2 1 34 34 H 1.09000 * 109.47361 * 299.99649 * 4 2 1 35 35 H 1.09000 * 109.47228 * 60.00409 * 4 2 1 36 36 H 1.08998 * 109.46689 * 180.02562 * 4 2 1 37 37 H 1.08995 * 109.46398 * 15.35488 * 6 5 2 38 38 H 1.08997 * 109.69027 * 58.71012 * 7 6 5 39 39 H 1.09001 * 109.47188 * 298.50950 * 7 6 5 40 40 H 1.08997 * 109.58536 * 294.71404 * 8 7 6 41 41 H 1.09005 * 109.58169 * 174.43279 * 8 7 6 42 42 H 0.96990 * 120.00193 * 359.97438 * 14 12 10 43 43 H 1.09004 * 109.46763 * 299.99892 * 15 14 12 44 44 H 1.09001 * 109.46873 * 59.99928 * 15 14 12 45 45 H 1.09000 * 109.47442 * 300.00351 * 16 15 14 46 46 H 1.09007 * 109.47447 * 59.99935 * 16 15 14 47 47 H 1.08996 * 109.47185 * 300.00271 * 17 16 15 48 48 H 1.09006 * 109.46500 * 60.00571 * 17 16 15 49 49 H 0.97002 * 120.00458 * 180.02562 * 21 20 18 50 50 H 1.08994 * 109.58396 * 173.39876 * 26 9 8 51 51 H 1.09006 * 109.58112 * 293.67882 * 26 9 8 52 52 H 1.09000 * 109.49625 * 61.43778 * 27 6 5 53 53 H 1.08999 * 109.52681 * 301.34947 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1668 6 6 1.6868 -2.0660 1.2051 7 6 0.5418 -2.2990 2.1983 8 6 0.1822 -3.7882 2.2100 9 7 1.3951 -4.5683 2.4910 10 6 1.4177 -5.4635 3.4983 11 8 0.4863 -5.5285 4.2734 12 6 2.5900 -6.3762 3.6606 13 8 3.4625 -6.3991 2.8175 14 7 2.6781 -7.1739 4.7434 15 6 3.8270 -8.0690 4.9022 16 6 3.6831 -8.8572 6.2056 17 6 4.8826 -9.7924 6.3712 18 6 4.7411 -10.5683 7.6554 19 1 3.8814 -10.4104 8.2897 20 6 5.7092 -11.4796 8.0204 21 7 6.7558 -11.6722 7.2477 22 14 5.5336 -12.4419 9.6118 23 1 4.7970 -13.7041 9.3484 24 1 6.8809 -12.7581 10.1504 25 1 4.7831 -11.6283 10.6019 26 6 2.5826 -4.3544 1.6528 27 6 2.9187 -2.8598 1.6460 28 1 -0.3633 0.6122 0.8255 29 1 -0.3634 0.4088 -0.9428 30 1 -0.3634 -1.0209 0.1175 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2491 37 1 1.3786 -2.3954 0.2129 38 1 -0.3292 -1.7168 1.8978 39 1 0.8580 -1.9933 3.1956 40 1 -0.2197 -4.0747 1.2382 41 1 -0.5619 -3.9782 2.9836 42 1 1.9809 -7.1554 5.4174 43 1 3.8673 -8.7612 4.0611 44 1 4.7442 -7.4809 4.9330 45 1 3.6430 -8.1647 7.0464 46 1 2.7658 -9.4453 6.1753 47 1 4.9222 -10.4848 5.5304 48 1 5.8001 -9.2046 6.4015 49 1 7.4368 -12.3136 7.5043 50 1 3.4232 -4.9162 2.0599 51 1 2.3773 -4.6895 0.6360 52 1 3.2124 -2.5485 2.6485 53 1 3.7389 -2.6745 0.9525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343323072.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:51 Heat of formation + Delta-G solvation = -143.554864 kcal Electronic energy + Delta-G solvation = -29951.788921 eV Core-core repulsion = 25822.601657 eV Total energy + Delta-G solvation = -4129.187265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11385 -40.60969 -39.66376 -38.17176 -37.06425 -35.28984 -34.62044 -33.06405 -32.58275 -32.18149 -29.05685 -28.39629 -28.26019 -26.93279 -25.36099 -24.53553 -23.57598 -22.38737 -21.84322 -20.91534 -20.64084 -18.86404 -18.46235 -18.17692 -17.59996 -17.35333 -16.89243 -16.44909 -16.26786 -16.14565 -15.96118 -15.94199 -15.26867 -15.23795 -14.93504 -14.64096 -14.48688 -14.29321 -13.98049 -13.80257 -13.71520 -13.47113 -13.24341 -13.10188 -12.99646 -12.89606 -12.76058 -12.70259 -12.61771 -12.57150 -12.43835 -12.40397 -12.21271 -11.74385 -11.71595 -11.68443 -11.51283 -11.21926 -11.15691 -10.56729 -10.54368 -10.36671 -10.13585 -9.92229 -8.19180 -6.29978 0.25007 1.20565 1.42433 1.43063 1.54169 2.01773 2.35808 2.43686 2.68212 3.14796 3.21554 3.69445 3.78124 3.92259 3.96511 4.01588 4.04820 4.08209 4.15698 4.18730 4.24796 4.31924 4.41260 4.52807 4.60280 4.66686 4.72143 4.73524 4.74781 4.82273 4.88172 4.91973 4.92129 4.97235 5.00354 5.03764 5.09469 5.14946 5.15299 5.22020 5.27158 5.38772 5.40948 5.42161 5.52298 5.71324 5.84812 5.87619 6.14698 6.24301 6.42050 6.62079 6.85899 6.86964 7.39370 8.92554 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030707 B = 0.001636 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.612824 B =17115.948123 C =17522.263945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.096 3.904 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.388 6.388 6 C 0.086 3.914 7 C -0.143 4.143 8 C 0.107 3.893 9 N -0.578 5.578 10 C 0.511 3.489 11 O -0.543 6.543 12 C 0.502 3.498 13 O -0.531 6.531 14 N -0.685 5.685 15 C 0.128 3.872 16 C -0.107 4.107 17 C 0.025 3.975 18 C -0.544 4.544 19 H 0.063 0.937 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.263 1.263 26 C 0.072 3.928 27 C -0.130 4.130 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.418 0.582 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.066 0.934 47 H -0.003 1.003 48 H -0.003 1.003 49 H 0.263 0.737 50 H 0.129 0.871 51 H 0.089 0.911 52 H 0.056 0.944 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.845 26.017 -19.246 35.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.058 3.942 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.308 6.308 6 C 0.029 3.971 7 C -0.182 4.182 8 C -0.014 4.014 9 N -0.311 5.311 10 C 0.293 3.707 11 O -0.421 6.421 12 C 0.284 3.716 13 O -0.410 6.410 14 N -0.336 5.336 15 C 0.005 3.995 16 C -0.145 4.145 17 C -0.013 4.013 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.789 3.211 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.187 1.187 26 C -0.049 4.049 27 C -0.169 4.169 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.256 0.744 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.072 0.928 50 H 0.146 0.854 51 H 0.107 0.893 52 H 0.074 0.926 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.466 25.970 -19.299 35.442 hybrid contribution -0.016 -0.802 1.015 1.294 sum -14.482 25.167 -18.284 34.314 Atomic orbital electron populations 1.22519 0.94805 1.02876 1.03210 1.21750 0.93904 0.93414 0.85150 1.21791 1.01566 0.93228 1.02952 1.22499 1.01979 1.01276 0.97942 1.88013 1.78545 1.21264 1.42969 1.22206 0.93959 0.81742 0.99231 1.22457 0.99930 0.95147 1.00630 1.21901 0.86072 0.90022 1.03396 1.48092 1.15489 1.37052 1.30466 1.20002 0.86913 0.81999 0.81744 1.90741 1.38126 1.70300 1.42933 1.20295 0.86700 0.82038 0.82603 1.90490 1.41603 1.67001 1.41883 1.45934 1.25627 1.39137 1.22928 1.21497 0.87448 0.91698 0.98882 1.21646 0.99914 0.97833 0.95083 1.18934 0.93085 0.93632 0.95632 1.21686 1.06985 1.22347 1.07157 0.91855 1.25958 0.94908 0.98205 1.00743 1.70090 1.11352 1.36214 1.39542 0.85455 0.77450 0.78880 0.79296 1.19865 1.20930 1.18736 1.22885 0.88965 0.96710 0.96295 1.22066 0.98571 0.93565 1.02680 0.92280 0.90332 0.91699 0.92502 0.89477 0.92500 0.91591 0.90060 0.92233 0.89391 0.88304 0.92519 0.88391 0.89185 0.74443 0.91506 0.91470 0.91563 0.91542 0.98432 0.98440 0.92798 0.85381 0.89288 0.92562 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 7.97 71.98 0.57 -0.91 16 2 C 0.10 1.06 1.11 -10.79 -0.01 1.05 16 3 C -0.14 -1.38 8.84 71.98 0.64 -0.74 16 4 C -0.18 -1.56 8.27 71.98 0.60 -0.96 16 5 O -0.39 -6.29 9.63 -148.98 -1.43 -7.72 16 6 C 0.09 1.20 1.61 30.73 0.05 1.25 16 7 C -0.14 -2.02 5.50 30.78 0.17 -1.86 16 8 C 0.11 1.66 6.43 86.36 0.56 2.22 16 9 N -0.58 -11.96 2.97 -820.46 -2.44 -14.40 16 10 C 0.51 13.47 7.74 87.27 0.68 14.14 16 11 O -0.54 -16.19 15.93 -3.24 -0.05 -16.25 16 12 C 0.50 14.49 7.74 87.27 0.68 15.17 16 13 O -0.53 -16.60 13.17 -3.24 -0.04 -16.65 16 14 N -0.68 -19.84 5.55 -464.39 -2.58 -22.42 16 15 C 0.13 4.27 5.67 86.38 0.49 4.76 16 16 C -0.11 -4.08 5.27 30.59 0.16 -3.92 16 17 C 0.02 1.27 4.97 29.85 0.15 1.42 16 18 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 19 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 21 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 22 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 C 0.07 1.33 6.00 86.36 0.52 1.85 16 27 C -0.13 -2.15 5.73 30.67 0.18 -1.97 16 28 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.50 5.72 -2.39 -0.01 0.49 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.53 5.98 -2.39 -0.01 0.51 16 35 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.09 0.94 5.08 -2.39 -0.01 0.93 16 38 H 0.10 1.06 6.23 -2.39 -0.01 1.05 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.61 7.00 -2.38 -0.02 1.59 16 42 H 0.42 11.05 7.96 -92.72 -0.74 10.31 16 43 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 47 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 48 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 49 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 50 H 0.13 3.01 4.28 -50.25 -0.22 2.79 16 51 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 52 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -67.62 413.68 1.83 -65.79 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.05 Total: 19.79 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.11 Total: 1.89 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -4.73 Total: -92.74 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.53 Total: -40.61 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -67.62 1.83 -65.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343323072.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.760 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds