Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47657 * 2 1 4 4 C 1.50706 * 109.46948 * 240.00094 * 2 1 3 5 5 H 1.08003 * 120.00061 * 239.99949 * 4 2 1 6 6 C 1.37873 * 120.00001 * 60.00211 * 4 2 1 7 7 N 1.31522 * 119.99925 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00178 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47374 * 89.99916 * 8 6 4 10 10 H 1.48502 * 109.47360 * 210.00295 * 8 6 4 11 11 H 1.48498 * 109.47148 * 329.99791 * 8 6 4 12 12 C 1.52996 * 109.47083 * 120.00450 * 2 1 3 13 13 N 1.46501 * 109.47046 * 299.99673 * 12 2 1 14 14 C 1.34780 * 120.00038 * 179.97438 * 13 12 2 15 15 O 1.21346 * 120.00155 * 0.02562 * 14 13 12 16 16 C 1.49447 * 119.99807 * 179.97438 * 14 13 12 17 17 O 1.21342 * 120.00133 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99807 * 180.02562 * 16 14 13 19 19 C 1.46501 * 120.00038 * 180.02562 * 18 16 14 20 20 C 1.52996 * 109.47046 * 180.02562 * 19 18 16 21 21 C 1.53007 * 109.46948 * 179.97438 * 20 19 18 22 22 O 1.42897 * 109.47093 * 179.97438 * 21 20 19 23 23 C 1.42898 * 114.00017 * 179.97438 * 22 21 20 24 24 C 1.54894 * 110.48190 * 93.24436 * 23 22 21 25 25 C 1.55238 * 102.58338 * 156.67678 * 24 23 22 26 26 C 1.54266 * 104.23333 * 322.08174 * 25 24 23 27 27 C 1.53869 * 106.59800 * 23.61579 * 26 25 24 28 28 H 1.09003 * 109.47270 * 299.99862 * 1 2 3 29 29 H 1.09001 * 109.47393 * 59.99812 * 1 2 3 30 30 H 1.08999 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47463 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46872 * 300.00507 * 3 2 1 33 33 H 1.09003 * 109.46668 * 59.99769 * 3 2 1 34 34 H 0.96998 * 119.99924 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47091 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.47607 * 59.99535 * 12 2 1 37 37 H 0.97003 * 119.99978 * 0.02562 * 13 12 2 38 38 H 0.97003 * 119.99984 * 0.02562 * 18 16 14 39 39 H 1.08999 * 109.47099 * 60.00301 * 19 18 16 40 40 H 1.08999 * 109.46805 * 300.00555 * 19 18 16 41 41 H 1.08999 * 109.47091 * 60.00094 * 20 19 18 42 42 H 1.08991 * 109.47437 * 299.99668 * 20 19 18 43 43 H 1.08999 * 109.47003 * 60.00218 * 21 20 19 44 44 H 1.08999 * 109.47000 * 300.00412 * 21 20 19 45 45 H 1.09002 * 110.43427 * 330.70321 * 23 22 21 46 46 H 1.08996 * 110.75388 * 275.06031 * 24 23 22 47 47 H 1.08993 * 110.76071 * 38.44257 * 24 23 22 48 48 H 1.09005 * 110.46917 * 203.39204 * 25 24 23 49 49 H 1.09007 * 110.58541 * 80.83124 * 25 24 23 50 50 H 1.08999 * 110.03060 * 264.32313 * 26 25 24 51 51 H 1.09006 * 110.06829 * 142.91691 * 26 25 24 52 52 H 1.09001 * 110.02983 * 240.71432 * 27 26 25 53 53 H 1.08996 * 110.07773 * 119.30576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4120 10 1 2.4865 -0.1413 -5.1123 11 1 3.6291 -1.7583 -3.7124 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8768 -0.4916 3.6695 15 8 2.5744 -1.4782 3.7808 16 6 1.3792 0.2132 4.8897 17 8 0.6820 1.2001 4.7784 18 7 1.7048 -0.2473 6.1138 19 6 1.2165 0.4433 7.3101 20 6 1.7270 -0.2777 8.5592 21 6 1.2175 0.4440 9.8085 22 8 1.6938 -0.2297 10.9753 23 6 1.2732 0.3672 12.2035 24 6 -0.0292 -0.2995 12.7121 25 6 0.0109 -0.0018 14.2352 26 6 1.5007 -0.1430 14.6101 27 6 2.3032 0.0917 13.3184 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 0.7095 1.1620 -3.4843 35 1 3.1299 -0.7217 1.2489 36 1 1.6766 -1.7490 1.2492 37 1 0.9937 0.7578 2.3564 38 1 2.2624 -1.0360 6.2028 39 1 0.1265 0.4433 7.3101 40 1 1.5798 1.4709 7.3100 41 1 2.8170 -0.2773 8.5590 42 1 1.3640 -1.3054 8.5595 43 1 0.1275 0.4440 9.8090 44 1 1.5808 1.4716 9.8081 45 1 1.1277 1.4398 12.0752 46 1 -0.9035 0.1582 12.2495 47 1 -0.0108 -1.3736 12.5277 48 1 -0.5905 -0.7285 14.7815 49 1 -0.3390 1.0106 14.4372 50 1 1.6957 -1.1443 14.9943 51 1 1.7705 0.6027 15.3580 52 1 2.8877 -0.7957 13.0756 53 1 2.9624 0.9513 13.4384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422278726.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -162.765505 kcal Electronic energy + Delta-G solvation = -28799.587122 eV Core-core repulsion = 24669.566821 eV Total energy + Delta-G solvation = -4130.020301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71403 -39.98589 -39.72488 -38.19507 -37.48135 -36.38519 -35.02430 -32.86563 -32.72047 -29.63567 -28.83211 -28.02529 -27.58436 -27.29112 -26.43186 -24.19066 -22.78687 -21.64660 -21.45255 -21.12536 -20.70006 -19.58975 -18.18183 -17.97060 -17.62033 -17.33935 -16.77888 -16.73168 -16.61390 -16.45715 -15.99979 -15.71878 -15.40569 -14.94640 -14.81429 -14.73510 -14.36996 -14.18385 -14.13618 -14.03837 -13.47674 -13.21220 -13.12972 -12.87889 -12.82224 -12.69783 -12.65046 -12.58447 -12.27863 -12.27196 -12.11611 -12.08889 -12.02882 -11.86462 -11.52179 -11.50501 -11.32113 -11.30210 -10.77555 -10.64597 -10.41609 -10.40619 -10.34748 -10.12121 -8.01025 -6.17523 0.34017 1.31900 1.44816 1.48010 1.55943 2.14140 2.44372 2.54649 2.84951 3.23004 3.46282 3.65392 3.70365 3.91602 3.94013 4.02966 4.17105 4.31908 4.34685 4.44026 4.47472 4.49736 4.53984 4.58333 4.60756 4.68194 4.72548 4.77976 4.92733 4.94792 4.99085 5.04312 5.06055 5.06193 5.06736 5.16638 5.17450 5.19691 5.21908 5.24546 5.28396 5.45045 5.48326 5.65025 5.68056 5.93277 6.11607 6.19199 6.33382 6.38414 6.41736 6.72906 6.86592 6.96155 7.50558 8.98262 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.044596 B = 0.001372 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.712250 B =20397.135342 C =20634.649806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.047 3.953 3 C -0.122 4.122 4 C -0.526 4.526 5 H 0.051 0.949 6 C 0.028 3.972 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.143 3.857 13 N -0.681 5.681 14 C 0.497 3.503 15 O -0.552 6.552 16 C 0.514 3.486 17 O -0.541 6.541 18 N -0.688 5.688 19 C 0.121 3.879 20 C -0.122 4.122 21 C 0.065 3.935 22 O -0.398 6.398 23 C 0.077 3.923 24 C -0.148 4.148 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.125 4.125 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.413 0.587 38 H 0.420 0.580 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.076 0.924 52 H 0.065 0.935 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 0.986 32.690 32.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.047 3.953 3 C -0.180 4.180 4 C -0.565 4.565 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.540 5.540 8 Si 0.774 3.226 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.278 3.722 15 O -0.431 6.431 16 C 0.294 3.706 17 O -0.418 6.418 18 N -0.342 5.342 19 C -0.002 4.002 20 C -0.160 4.160 21 C -0.012 4.012 22 O -0.318 6.318 23 C 0.019 3.981 24 C -0.186 4.186 25 C -0.160 4.160 26 C -0.160 4.160 27 C -0.163 4.163 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.251 0.749 38 H 0.258 0.742 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.085 0.915 51 H 0.095 0.905 52 H 0.084 0.916 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.083 0.952 32.542 32.573 hybrid contribution 0.158 -0.287 -1.260 1.302 sum -0.925 0.665 31.282 31.303 Atomic orbital electron populations 1.21689 0.97259 0.98874 1.00187 1.18414 0.93242 0.93104 0.90558 1.21688 0.98196 0.97933 1.00187 1.21239 1.31804 1.12264 0.91157 0.93057 1.25480 0.95109 0.95535 1.01101 1.69928 1.37060 1.23342 1.23625 0.85720 0.78729 0.78380 0.79736 1.20529 1.21087 1.19786 1.21546 0.97937 0.95494 0.82980 1.46076 1.50756 1.31465 1.05036 1.20344 0.81690 0.84887 0.85306 1.90717 1.38538 1.26712 1.87094 1.19963 0.81129 0.84375 0.85106 1.90754 1.37783 1.26253 1.87042 1.45694 1.52008 1.32152 1.04311 1.21424 1.00077 0.96658 0.82018 1.21569 1.02676 1.00617 0.91107 1.22394 0.98712 0.95761 0.84330 1.87872 1.74945 1.54958 1.13995 1.23192 0.94299 0.96848 0.83730 1.23052 0.97575 1.01265 0.96713 1.22348 0.96574 1.02395 0.94700 1.22093 0.94752 1.02426 0.96690 1.22214 0.97777 1.02541 0.93731 0.95149 0.91836 0.95791 0.95774 0.91833 0.95150 0.93057 0.92713 0.92707 0.74878 0.74198 0.90382 0.90346 0.89918 0.89989 0.92157 0.91948 0.90609 0.90982 0.91518 0.90859 0.90686 0.91495 0.90543 0.91639 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 2 C 0.05 2.20 0.50 -52.93 -0.03 2.17 16 3 C -0.12 -5.55 8.08 71.98 0.58 -4.96 16 4 C -0.53 -27.35 8.01 25.60 0.21 -27.15 16 5 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 6 C 0.03 1.44 5.15 84.65 0.44 1.87 16 7 N -0.90 -48.22 9.35 21.45 0.20 -48.02 16 8 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.14 5.94 4.50 86.38 0.39 6.33 16 13 N -0.68 -24.67 4.95 -464.42 -2.30 -26.97 16 14 C 0.50 16.84 7.89 87.27 0.69 17.52 16 15 O -0.55 -20.50 16.48 -3.24 -0.05 -20.55 16 16 C 0.51 14.80 7.89 87.27 0.69 15.48 16 17 O -0.54 -17.66 16.48 -3.22 -0.05 -17.71 16 18 N -0.69 -14.45 5.55 -464.42 -2.58 -17.03 16 19 C 0.12 1.89 5.67 86.38 0.49 2.38 16 20 C -0.12 -1.49 5.70 30.60 0.17 -1.31 16 21 C 0.07 0.77 5.79 71.98 0.42 1.18 16 22 O -0.40 -6.14 10.05 -148.98 -1.50 -7.64 16 23 C 0.08 0.91 3.33 31.67 0.11 1.02 16 24 C -0.15 -1.58 6.65 32.01 0.21 -1.36 16 25 C -0.12 -0.98 6.84 31.79 0.22 -0.76 16 26 C -0.12 -0.99 6.80 31.32 0.21 -0.78 16 27 C -0.12 -1.34 6.56 31.32 0.21 -1.13 16 28 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 29 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 30 H 0.02 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 33 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 34 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.41 14.59 5.64 -92.71 -0.52 14.07 16 38 H 0.42 7.89 7.94 -92.71 -0.74 7.16 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.62 8.10 -2.39 -0.02 0.60 16 45 H 0.08 0.75 7.84 -2.39 -0.02 0.73 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 50 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 52 H 0.06 0.85 8.07 -2.39 -0.02 0.83 16 53 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -60.59 420.93 0.96 -59.63 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.36 Total: 28.56 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 5.58 Total: 5.53 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -4.68 Total: -92.02 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -1.60 Total: -45.90 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -60.59 0.96 -59.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422278726.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.140 kcal (2) G-P(sol) polarization free energy of solvation -60.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds