Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46732 * 2 1 4 4 C 1.50694 * 109.47017 * 240.00275 * 2 1 3 5 5 H 1.08000 * 119.99792 * 241.34538 * 4 2 1 6 6 C 1.37874 * 120.00601 * 61.34655 * 4 2 1 7 7 N 1.31508 * 120.00606 * 193.98191 * 6 4 2 8 8 Si 1.86804 * 119.99614 * 13.97167 * 6 4 2 9 9 H 1.48503 * 109.46936 * 84.55634 * 8 6 4 10 10 H 1.48499 * 109.47020 * 204.55143 * 8 6 4 11 11 H 1.48502 * 109.47495 * 324.55238 * 8 6 4 12 12 C 1.52994 * 109.47098 * 119.99910 * 2 1 3 13 13 N 1.46504 * 109.47526 * 299.99983 * 12 2 1 14 14 C 1.34770 * 120.00320 * 180.02562 * 13 12 2 15 15 O 1.21349 * 120.00323 * 0.02562 * 14 13 12 16 16 C 1.49456 * 120.00056 * 179.97438 * 14 13 12 17 17 O 1.21341 * 119.99921 * 0.02562 * 16 14 13 18 18 N 1.34780 * 120.00032 * 179.97438 * 16 14 13 19 19 C 1.46493 * 119.99970 * 180.02562 * 18 16 14 20 20 C 1.53003 * 109.47020 * 180.02562 * 19 18 16 21 21 C 1.53007 * 109.46870 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.46870 * 180.02562 * 21 20 19 23 23 H 1.09006 * 109.47805 * 305.02186 * 22 21 20 24 24 C 1.53089 * 109.47773 * 185.00003 * 22 21 20 25 25 C 1.53182 * 109.16171 * 182.40674 * 24 22 21 26 26 C 1.53182 * 109.03493 * 56.97663 * 25 24 22 27 27 C 1.53091 * 109.16429 * 303.02090 * 26 25 24 28 28 O 1.42902 * 109.47968 * 65.05315 * 22 21 20 29 29 H 1.09003 * 109.46860 * 309.36511 * 1 2 3 30 30 H 1.08998 * 109.47542 * 69.37055 * 1 2 3 31 31 H 1.09001 * 109.46970 * 189.36821 * 1 2 3 32 32 H 1.09005 * 109.46906 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47289 * 300.00176 * 3 2 1 34 34 H 1.08996 * 109.47514 * 60.00332 * 3 2 1 35 35 H 0.96997 * 120.00456 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46983 * 180.02562 * 12 2 1 37 37 H 1.08996 * 109.47470 * 60.00652 * 12 2 1 38 38 H 0.97004 * 119.99541 * 359.97438 * 13 12 2 39 39 H 0.96998 * 119.99649 * 0.02562 * 18 16 14 40 40 H 1.08996 * 109.47241 * 60.00095 * 19 18 16 41 41 H 1.09003 * 109.47064 * 300.00459 * 19 18 16 42 42 H 1.08996 * 109.47453 * 59.99714 * 20 19 18 43 43 H 1.08998 * 109.46688 * 299.99808 * 20 19 18 44 44 H 1.09003 * 109.47025 * 299.99832 * 21 20 19 45 45 H 1.08995 * 109.46931 * 59.99722 * 21 20 19 46 46 H 1.08998 * 109.52006 * 302.30723 * 24 22 21 47 47 H 1.08998 * 109.52347 * 62.49980 * 24 22 21 48 48 H 1.08993 * 109.54646 * 176.84689 * 25 24 22 49 49 H 1.08998 * 109.54197 * 297.02798 * 25 24 22 50 50 H 1.09007 * 109.52015 * 62.92757 * 26 25 24 51 51 H 1.08996 * 109.52204 * 183.11026 * 26 25 24 52 52 H 1.09001 * 109.47645 * 177.59087 * 27 26 25 53 53 H 1.08993 * 109.48209 * 297.62515 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6351 -1.6009 -1.1315 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9725 -3.5460 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5865 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5761 -1.4768 3.7809 16 6 1.3800 0.2141 4.8898 17 8 0.6820 1.2004 4.7785 18 7 1.7056 -0.2464 6.1139 19 6 1.2173 0.4442 7.3100 20 6 1.7279 -0.2767 8.5593 21 6 1.2173 0.4443 9.8086 22 6 1.7284 -0.2763 11.0578 23 1 1.4415 -1.3270 11.0143 24 6 1.1176 0.3685 12.3048 25 6 1.6801 -0.3187 13.5529 26 6 3.2084 -0.2154 13.5342 27 6 3.7383 -0.8377 12.2397 28 8 3.1524 -0.1729 11.1185 29 1 -0.3633 0.6518 0.7945 30 1 -0.3634 0.3621 -0.9617 31 1 -0.3633 -1.0140 0.1673 32 1 3.1300 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6972 -0.6300 -4.4268 36 1 3.1300 -0.7208 1.2494 37 1 1.6768 -1.7489 1.2492 38 1 0.9943 0.7583 2.3564 39 1 2.2633 -1.0350 6.2029 40 1 0.1274 0.4442 7.3101 41 1 1.5806 1.4719 7.3100 42 1 2.8178 -0.2764 8.5591 43 1 1.3648 -1.3044 8.5595 44 1 1.5799 1.4722 9.8085 45 1 0.1274 0.4435 9.8085 46 1 1.3703 1.4286 12.3275 47 1 0.0342 0.2517 12.2817 48 1 1.2924 0.1722 14.4455 49 1 1.3843 -1.3678 13.5561 50 1 3.5032 0.8329 13.5818 51 1 3.6200 -0.7497 14.3904 52 1 4.8221 -0.7287 12.2012 53 1 3.4779 -1.8957 12.2118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422390836.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -152.216999 kcal Electronic energy + Delta-G solvation = -29307.069517 eV Core-core repulsion = 25177.506634 eV Total energy + Delta-G solvation = -4129.562883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72188 -40.39727 -39.81928 -38.43780 -37.05856 -35.16730 -34.52439 -34.44658 -33.42527 -31.48950 -28.64140 -28.03968 -27.61556 -27.01054 -25.49148 -24.54404 -23.20389 -22.28988 -21.33231 -21.11011 -21.00599 -19.51197 -18.14624 -17.86899 -17.53121 -17.23447 -17.10523 -16.91424 -16.42342 -16.18462 -16.06568 -15.55015 -15.43871 -15.25036 -15.01178 -14.85118 -14.56152 -14.44207 -14.37186 -14.03573 -13.77148 -13.76971 -13.47540 -13.35543 -12.98366 -12.88698 -12.65373 -12.47158 -12.39332 -12.20228 -12.05888 -11.99857 -11.97341 -11.78356 -11.68821 -11.52095 -11.15112 -11.09482 -10.71728 -10.61718 -10.40741 -10.32949 -10.29171 -10.17888 -8.29749 -6.31089 0.34750 1.35013 1.37515 1.39341 1.50827 2.14726 2.34993 2.68416 2.89596 3.06371 3.45155 3.62526 3.90532 3.97295 4.01650 4.02084 4.05236 4.07833 4.29305 4.30672 4.38260 4.38655 4.49647 4.57276 4.66659 4.70088 4.70200 4.77816 4.79452 4.83928 4.89064 4.90057 4.90656 4.99984 5.04357 5.08052 5.08634 5.14105 5.16638 5.21256 5.25981 5.29491 5.37854 5.42710 5.47100 5.67913 5.75466 5.94686 6.28425 6.37112 6.38762 6.70624 6.76464 6.95617 7.33901 8.86796 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.037135 B = 0.001548 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.826856 B =18081.284679 C =18425.517487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.025 3.975 3 C -0.150 4.150 4 C -0.514 4.514 5 H 0.035 0.965 6 C 0.022 3.978 7 N -0.942 5.942 8 Si 0.940 3.060 9 H -0.282 1.282 10 H -0.314 1.314 11 H -0.210 1.210 12 C 0.153 3.847 13 N -0.683 5.683 14 C 0.499 3.501 15 O -0.550 6.550 16 C 0.513 3.487 17 O -0.541 6.541 18 N -0.689 5.689 19 C 0.116 3.884 20 C -0.120 4.120 21 C -0.106 4.106 22 C 0.087 3.913 23 H 0.063 0.937 24 C -0.150 4.150 25 C -0.125 4.125 26 C -0.156 4.156 27 C 0.054 3.946 28 O -0.399 6.399 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.265 0.735 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.416 0.584 39 H 0.419 0.581 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.084 0.916 52 H 0.096 0.904 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 3.902 37.027 37.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 C -0.206 4.206 4 C -0.553 4.553 5 H 0.053 0.947 6 C -0.176 4.176 7 N -0.581 5.581 8 Si 0.769 3.231 9 H -0.210 1.210 10 H -0.244 1.244 11 H -0.134 1.134 12 C 0.030 3.970 13 N -0.335 5.335 14 C 0.280 3.720 15 O -0.429 6.429 16 C 0.293 3.707 17 O -0.419 6.419 18 N -0.342 5.342 19 C -0.006 4.006 20 C -0.158 4.158 21 C -0.143 4.143 22 C 0.030 3.970 23 H 0.081 0.919 24 C -0.188 4.188 25 C -0.162 4.162 26 C -0.193 4.193 27 C -0.022 4.022 28 O -0.319 6.319 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.254 0.746 39 H 0.256 0.744 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.092 0.908 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.102 0.898 52 H 0.114 0.886 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.662 3.980 36.727 37.037 hybrid contribution 0.070 0.197 -0.760 0.788 sum -2.592 4.178 35.967 36.302 Atomic orbital electron populations 1.22241 0.96201 1.00775 1.00806 1.18696 0.93778 0.93097 0.92058 1.22321 1.01266 0.96962 1.00091 1.20951 1.32980 1.11191 0.90137 0.94655 1.25765 0.95338 1.01216 0.95321 1.70089 1.50560 1.38118 0.99375 0.86402 0.79417 0.80411 0.76831 1.20963 1.24381 1.13368 1.21309 0.98254 0.95408 0.82071 1.45982 1.51126 1.31610 1.04831 1.20364 0.81554 0.84803 0.85314 1.90737 1.38327 1.26754 1.87093 1.19952 0.81219 0.84409 0.85115 1.90744 1.37834 1.26253 1.87040 1.45805 1.51819 1.32051 1.04529 1.21658 0.99928 0.96575 0.82419 1.21685 1.01970 1.00040 0.92107 1.21530 1.01615 0.99786 0.91418 1.22209 0.80753 0.99118 0.94951 0.91949 1.22210 1.01400 1.00558 0.94634 1.21616 0.95181 1.01245 0.98181 1.22183 0.96591 1.01999 0.98560 1.22683 0.98503 0.95669 0.85339 1.87925 1.20682 1.76512 1.46800 0.92297 0.93469 0.93549 0.92954 0.94612 0.91495 0.92655 0.92346 0.92460 0.74600 0.74375 0.90454 0.91199 0.91013 0.90288 0.91079 0.88503 0.91626 0.89641 0.90846 0.91412 0.91802 0.89775 0.88552 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 7.53 71.98 0.54 -5.03 16 2 C 0.02 1.06 0.50 -52.93 -0.03 1.03 16 3 C -0.15 -5.78 7.52 71.98 0.54 -5.24 16 4 C -0.51 -27.97 8.62 25.60 0.22 -27.75 16 5 H 0.04 2.15 7.99 -2.91 -0.02 2.13 16 6 C 0.02 1.21 5.32 84.65 0.45 1.66 16 7 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 8 Si 0.94 43.10 22.79 68.60 1.56 44.67 16 9 H -0.28 -12.73 7.10 99.48 0.71 -12.03 16 10 H -0.31 -14.84 7.11 99.48 0.71 -14.13 16 11 H -0.21 -8.32 4.65 99.48 0.46 -7.86 16 12 C 0.15 5.96 4.49 86.38 0.39 6.34 16 13 N -0.68 -22.35 5.00 -464.42 -2.32 -24.67 16 14 C 0.50 15.85 7.89 87.27 0.69 16.54 16 15 O -0.55 -19.80 16.48 -3.24 -0.05 -19.85 16 16 C 0.51 13.94 7.89 87.27 0.69 14.62 16 17 O -0.54 -16.52 16.48 -3.22 -0.05 -16.57 16 18 N -0.69 -14.01 5.55 -464.42 -2.58 -16.59 16 19 C 0.12 1.79 5.67 86.38 0.49 2.28 16 20 C -0.12 -1.36 5.23 30.60 0.16 -1.20 16 21 C -0.11 -1.01 4.92 30.60 0.15 -0.86 16 22 C 0.09 0.91 2.64 30.63 0.08 0.99 16 23 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 24 C -0.15 -1.26 5.42 30.68 0.17 -1.09 16 25 C -0.12 -0.93 6.03 30.72 0.19 -0.74 16 26 C -0.16 -1.27 6.14 30.69 0.19 -1.08 16 27 C 0.05 0.56 6.84 72.01 0.49 1.06 16 28 O -0.40 -5.82 9.94 -148.98 -1.48 -7.30 16 29 H 0.06 1.89 7.13 -2.39 -0.02 1.88 16 30 H 0.05 1.94 4.30 -2.39 -0.01 1.93 16 31 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 32 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.04 1.44 2.25 -2.39 -0.01 1.43 16 34 H 0.07 2.12 6.86 -2.39 -0.02 2.10 16 35 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.42 12.51 5.73 -92.71 -0.53 11.98 16 39 H 0.42 7.71 7.94 -92.71 -0.74 6.97 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 0.98 7.82 -2.39 -0.02 0.96 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 51 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -68.76 406.57 0.18 -68.58 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.60 Total: 27.81 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.41 Total: 1.55 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.60 Total: -98.89 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -1.59 Total: -43.72 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.56 Total: 44.67 kcal Total: -68.76 0.18 -68.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422390836.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.633 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds