Wall clock time and date at job start Sat Apr 11 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46495 * 120.00605 * 2 1 4 4 C 1.52999 * 109.47447 * 270.00440 * 3 2 1 5 5 H 1.08997 * 109.47212 * 304.99689 * 4 3 2 6 6 C 1.53001 * 109.47404 * 64.99392 * 4 3 2 7 7 C 1.52999 * 109.47404 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47125 * 300.00516 * 7 6 4 9 9 C 1.52997 * 109.47553 * 59.99791 * 8 7 6 10 10 C 1.53001 * 109.47125 * 184.99908 * 4 3 2 11 11 H 1.08993 * 109.47269 * 59.99998 * 10 4 3 12 12 O 1.42901 * 109.46949 * 299.99338 * 10 4 3 13 13 C 1.34778 * 119.99628 * 180.02562 * 2 1 3 14 14 O 1.21355 * 120.00193 * 183.59051 * 13 2 1 15 15 C 1.49449 * 120.00310 * 3.58130 * 13 2 1 16 16 O 1.21351 * 119.99811 * 354.17806 * 15 13 2 17 17 N 1.34779 * 120.00191 * 174.44598 * 15 13 2 18 18 C 1.46498 * 119.99540 * 179.72998 * 17 15 13 19 19 C 1.53004 * 109.46730 * 180.02562 * 18 17 15 20 20 C 1.53008 * 109.46891 * 299.99871 * 19 18 17 21 21 C 1.53001 * 109.47396 * 59.99884 * 19 18 17 22 22 C 1.50699 * 109.47155 * 179.97438 * 19 18 17 23 23 H 1.07998 * 120.00013 * 359.97438 * 22 19 18 24 24 C 1.37881 * 120.00058 * 179.97438 * 22 19 18 25 25 N 1.31521 * 119.99731 * 359.97438 * 24 22 19 26 26 Si 1.86795 * 119.99950 * 179.97438 * 24 22 19 27 27 H 1.48496 * 109.47205 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47013 * 120.00388 * 26 24 22 29 29 H 1.48500 * 109.47313 * 239.99617 * 26 24 22 30 30 H 1.08997 * 109.47319 * 263.96775 * 1 2 3 31 31 H 1.09007 * 109.47146 * 23.96588 * 1 2 3 32 32 H 1.08997 * 109.47857 * 143.95903 * 1 2 3 33 33 H 1.09006 * 109.46920 * 29.99926 * 3 2 1 34 34 H 1.08997 * 109.47410 * 150.00156 * 3 2 1 35 35 H 1.08999 * 109.47121 * 300.00948 * 6 4 3 36 36 H 1.09006 * 109.46584 * 60.00255 * 6 4 3 37 37 H 1.08993 * 109.47049 * 180.02562 * 7 6 4 38 38 H 1.08995 * 109.46714 * 60.00210 * 7 6 4 39 39 H 1.08997 * 109.46897 * 299.99974 * 8 7 6 40 40 H 1.08996 * 109.46932 * 179.97438 * 8 7 6 41 41 H 1.08997 * 109.47582 * 179.97438 * 9 8 7 42 42 H 1.09003 * 109.47080 * 59.99478 * 9 8 7 43 43 H 0.96704 * 113.99731 * 180.02562 * 12 10 4 44 44 H 0.96997 * 120.00059 * 359.73232 * 17 15 13 45 45 H 1.08997 * 109.47422 * 299.99636 * 18 17 15 46 46 H 1.09000 * 109.47390 * 60.00400 * 18 17 15 47 47 H 1.08999 * 109.46650 * 59.99955 * 20 19 18 48 48 H 1.08997 * 109.46997 * 180.02562 * 20 19 18 49 49 H 1.09006 * 109.46750 * 300.00058 * 20 19 18 50 50 H 1.08990 * 109.47222 * 59.99769 * 21 19 18 51 51 H 1.08996 * 109.46913 * 180.02562 * 21 19 18 52 52 H 1.09006 * 109.46956 * 300.00029 * 21 19 18 53 53 H 0.96998 * 119.99424 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9816 6 6 1.1180 2.0136 -2.1265 7 6 1.3730 2.4560 -3.5688 8 6 2.2442 3.7138 -3.5700 9 6 3.5787 3.4106 -2.8860 10 6 3.3239 2.9680 -1.4442 11 1 4.2747 2.7519 -0.9570 12 8 2.6531 4.0133 -0.7375 13 6 2.1387 -1.1673 -0.0005 14 8 3.3505 -1.1684 0.0653 15 6 1.3937 -2.4602 -0.0819 16 8 0.1809 -2.4652 -0.0410 17 7 2.0689 -3.6211 -0.1954 18 6 1.3386 -4.8890 -0.2692 19 6 2.3340 -6.0444 -0.3925 20 6 3.1710 -5.8633 -1.6604 21 6 3.2550 -6.0567 0.8292 22 6 1.5828 -7.3487 -0.4678 23 1 0.5035 -7.3531 -0.4310 24 6 2.2736 -8.5363 -0.5838 25 7 3.5880 -8.5308 -0.6291 26 14 1.3425 -10.1531 -0.6764 27 1 -0.1170 -9.8885 -0.6058 28 1 1.6602 -10.8345 -1.9571 29 1 1.7443 -11.0215 0.4592 30 1 -0.3634 -0.1080 1.0219 31 1 -0.3634 0.9391 -0.4175 32 1 -0.3635 -0.8309 -0.6046 33 1 1.6085 2.0283 0.5139 34 1 3.1499 1.1382 0.5138 35 1 0.4972 1.1177 -2.1252 36 1 0.6063 2.8109 -1.5874 37 1 0.4223 2.6724 -4.0559 38 1 1.8849 1.6590 -4.1081 39 1 1.7323 4.5107 -3.0306 40 1 2.4262 4.0286 -4.5975 41 1 4.1995 4.3065 -2.8873 42 1 4.0906 2.6135 -3.4253 43 1 3.1486 4.8428 -0.6989 44 1 3.0383 -3.6172 -0.2281 45 1 0.7426 -5.0182 0.6342 46 1 0.6822 -4.8801 -1.1394 47 1 3.7143 -4.9199 -1.6054 48 1 3.8798 -6.6866 -1.7485 49 1 2.5148 -5.8545 -2.5308 50 1 2.6588 -6.1856 1.7324 51 1 3.9643 -6.8796 0.7411 52 1 3.7983 -5.1133 0.8841 53 1 4.0739 -9.3663 -0.7110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422483526.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:42 Heat of formation + Delta-G solvation = -149.575794 kcal Electronic energy + Delta-G solvation = -31197.277112 eV Core-core repulsion = 27067.828760 eV Total energy + Delta-G solvation = -4129.448352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96883 -40.48859 -39.51653 -38.26490 -37.03862 -35.81064 -34.98282 -32.75840 -32.62213 -30.87459 -28.29465 -28.24300 -27.59930 -27.35397 -26.52550 -24.07662 -23.49190 -22.34545 -21.02026 -20.67830 -20.54602 -18.93505 -18.00449 -17.78781 -17.72731 -17.39738 -16.75835 -16.58237 -16.53687 -16.06013 -15.66568 -15.42519 -15.14429 -14.94016 -14.79080 -14.58442 -14.33780 -14.16025 -14.07495 -13.88189 -13.46770 -13.33329 -13.21386 -13.12670 -13.08494 -12.75178 -12.70571 -12.55858 -12.46839 -12.33335 -12.27895 -12.12142 -11.89333 -11.67418 -11.51573 -11.44010 -11.27614 -11.03220 -10.73211 -10.61789 -10.42023 -10.34830 -10.13896 -9.74415 -8.01990 -6.18401 0.35318 1.32644 1.42965 1.47372 1.56602 2.12017 2.43209 2.56094 3.22011 3.34006 3.37074 3.68835 3.78494 3.87140 4.12246 4.19319 4.31123 4.34480 4.37625 4.45192 4.47075 4.47363 4.56129 4.62257 4.66663 4.67629 4.79251 4.88522 4.95525 4.96617 5.00783 5.02901 5.06970 5.09445 5.16235 5.18569 5.25000 5.28778 5.30801 5.36694 5.40728 5.50564 5.56654 5.63742 5.67384 5.91556 6.10119 6.18191 6.27655 6.40711 6.69567 6.86089 6.96842 6.97491 7.49689 8.97577 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.002210 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.651020 B =12667.958977 C =12797.581062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.576 5.576 3 C 0.122 3.878 4 C -0.093 4.093 5 H 0.064 0.936 6 C -0.109 4.109 7 C -0.122 4.122 8 C -0.111 4.111 9 C -0.150 4.150 10 C 0.119 3.881 11 H 0.057 0.943 12 O -0.569 6.569 13 C 0.505 3.495 14 O -0.546 6.546 15 C 0.496 3.504 16 O -0.538 6.538 17 N -0.683 5.683 18 C 0.145 3.855 19 C 0.051 3.949 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.524 4.524 23 H 0.052 0.948 24 C 0.025 3.975 25 N -0.902 5.902 26 Si 0.949 3.051 27 H -0.271 1.271 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.392 0.608 44 H 0.411 0.589 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.028 0.972 48 H 0.063 0.937 49 H 0.024 0.976 50 H 0.023 0.977 51 H 0.063 0.937 52 H 0.028 0.972 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 27.371 -2.978 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.308 5.308 3 C 0.000 4.000 4 C -0.112 4.112 5 H 0.082 0.918 6 C -0.146 4.146 7 C -0.159 4.159 8 C -0.148 4.148 9 C -0.187 4.187 10 C 0.060 3.940 11 H 0.075 0.925 12 O -0.377 6.377 13 C 0.287 3.713 14 O -0.424 6.424 15 C 0.277 3.723 16 O -0.417 6.417 17 N -0.334 5.334 18 C 0.022 3.978 19 C 0.050 3.950 20 C -0.181 4.181 21 C -0.182 4.182 22 C -0.562 4.562 23 H 0.070 0.930 24 C -0.174 4.174 25 N -0.541 5.541 26 Si 0.776 3.224 27 H -0.196 1.196 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.242 0.758 44 H 0.249 0.751 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.082 0.918 49 H 0.043 0.957 50 H 0.042 0.958 51 H 0.082 0.918 52 H 0.047 0.953 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.143 26.774 -2.854 27.011 hybrid contribution 0.577 -1.002 -0.144 1.165 sum -1.566 25.772 -2.998 25.993 Atomic orbital electron populations 1.22540 0.76681 1.05005 1.03605 1.47800 1.08937 1.04828 1.69236 1.21716 0.97786 0.83078 0.97388 1.21527 0.97726 0.96264 0.95706 0.91806 1.21576 0.95899 1.01139 0.95995 1.21547 1.00247 0.97910 0.96230 1.21409 0.95334 0.97634 1.00424 1.22216 0.98263 1.02310 0.95941 1.21545 0.93816 0.86921 0.91728 0.92513 1.86452 1.49539 1.24590 1.77166 1.20134 0.87176 0.85616 0.78327 1.90727 1.14194 1.87509 1.49953 1.20318 0.87673 0.85720 0.78603 1.90628 1.13802 1.86977 1.50301 1.46096 1.11817 1.05709 1.69808 1.21533 0.94865 0.81145 1.00268 1.18380 0.92211 0.91253 0.93169 1.21703 0.99808 0.99321 0.97290 1.21709 0.99776 0.99612 0.97100 1.21269 0.92886 0.91423 1.50655 0.92989 1.25511 0.95604 1.01594 0.94725 1.69939 1.06655 1.27015 1.50465 0.85647 0.79090 0.80328 0.77377 1.19585 1.20895 1.20934 0.91976 0.88683 0.89026 0.87639 0.90754 0.92539 0.90571 0.91390 0.93204 0.91051 0.91668 0.89828 0.91821 0.75789 0.75120 0.92777 0.92633 0.95307 0.91791 0.95706 0.95769 0.91792 0.95309 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.34 8.43 127.77 1.08 2.41 16 2 N -0.58 -14.11 2.70 -848.37 -2.29 -16.40 16 3 C 0.12 2.45 4.68 86.38 0.40 2.85 16 4 C -0.09 -1.67 2.23 -10.79 -0.02 -1.70 16 5 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 6 C -0.11 -1.78 4.04 30.59 0.12 -1.65 16 7 C -0.12 -1.80 5.92 30.59 0.18 -1.62 16 8 C -0.11 -1.31 5.78 30.59 0.18 -1.14 16 9 C -0.15 -1.71 5.63 30.58 0.17 -1.54 16 10 C 0.12 1.61 3.21 30.58 0.10 1.71 16 11 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 12 O -0.57 -6.49 11.39 -148.98 -1.70 -8.19 16 13 C 0.51 15.83 7.73 87.27 0.67 16.50 16 14 O -0.55 -19.09 16.05 -3.26 -0.05 -19.14 16 15 C 0.50 17.31 7.78 87.27 0.68 17.99 16 16 O -0.54 -19.67 13.14 -3.25 -0.04 -19.71 16 17 N -0.68 -25.30 4.95 -464.41 -2.30 -27.59 16 18 C 0.14 6.03 4.50 86.38 0.39 6.42 16 19 C 0.05 2.36 0.50 -52.92 -0.03 2.33 16 20 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 21 C -0.12 -5.73 8.08 71.98 0.58 -5.15 16 22 C -0.52 -27.31 8.01 25.60 0.21 -27.10 16 23 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 24 C 0.03 1.33 5.15 84.65 0.44 1.76 16 25 N -0.90 -48.58 9.35 21.45 0.20 -48.38 16 26 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 28 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.48 6.26 -2.38 -0.01 1.47 16 32 H 0.09 2.35 5.36 -2.47 -0.01 2.34 16 33 H 0.11 1.80 7.77 -2.38 -0.02 1.78 16 34 H 0.07 1.68 7.37 -2.39 -0.02 1.67 16 35 H 0.06 1.03 6.00 -2.39 -0.01 1.01 16 36 H 0.08 1.19 7.68 -2.38 -0.02 1.17 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.82 7.68 -2.39 -0.02 0.80 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.39 1.46 9.08 -74.05 -0.67 0.79 16 44 H 0.41 15.06 5.65 -92.71 -0.52 14.54 16 45 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 48 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 49 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 50 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 52 H 0.03 1.17 6.86 -2.38 -0.02 1.15 16 53 H 0.26 13.46 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -60.31 400.66 1.30 -59.02 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.28 Total: 29.02 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 5.73 Total: 7.01 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -4.39 Total: -92.38 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -1.79 Total: -47.04 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -60.31 1.30 -59.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483526.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.561 kcal (2) G-P(sol) polarization free energy of solvation -60.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds