Wall clock time and date at job start Sat Apr 11 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99948 * 2 1 4 4 C 1.52992 * 109.47629 * 270.00605 * 3 2 1 5 5 H 1.09002 * 109.47038 * 304.99654 * 4 3 2 6 6 C 1.53002 * 109.47340 * 64.99613 * 4 3 2 7 7 C 1.53002 * 109.47383 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46948 * 300.00257 * 7 6 4 9 9 C 1.53002 * 109.47289 * 59.99685 * 8 7 6 10 10 C 1.52997 * 109.47310 * 184.99734 * 4 3 2 11 11 H 1.08995 * 109.47582 * 299.99676 * 10 4 3 12 12 O 1.42895 * 109.47208 * 60.00008 * 10 4 3 13 13 C 1.34778 * 120.00247 * 180.02562 * 2 1 3 14 14 O 1.21351 * 119.99702 * 183.59292 * 13 2 1 15 15 C 1.49448 * 120.00098 * 3.58235 * 13 2 1 16 16 O 1.21349 * 119.99956 * 354.17639 * 15 13 2 17 17 N 1.34776 * 119.99800 * 173.89462 * 15 13 2 18 18 C 1.46503 * 119.99443 * 180.27567 * 17 15 13 19 19 C 1.53004 * 109.46657 * 180.02562 * 18 17 15 20 20 C 1.53002 * 109.47110 * 300.00048 * 19 18 17 21 21 C 1.52999 * 109.47066 * 60.00419 * 19 18 17 22 22 C 1.50706 * 109.46823 * 180.02562 * 19 18 17 23 23 H 1.07994 * 120.00145 * 359.97438 * 22 19 18 24 24 C 1.37878 * 119.99524 * 179.97438 * 22 19 18 25 25 N 1.31513 * 120.00385 * 0.02562 * 24 22 19 26 26 Si 1.86804 * 119.99608 * 179.97438 * 24 22 19 27 27 H 1.48502 * 109.46862 * 90.00425 * 26 24 22 28 28 H 1.48496 * 109.47033 * 210.00064 * 26 24 22 29 29 H 1.48500 * 109.47389 * 330.00337 * 26 24 22 30 30 H 1.09007 * 109.46863 * 263.96160 * 1 2 3 31 31 H 1.08994 * 109.47353 * 23.96387 * 1 2 3 32 32 H 1.09003 * 109.46957 * 143.96719 * 1 2 3 33 33 H 1.09006 * 109.47056 * 30.00431 * 3 2 1 34 34 H 1.09000 * 109.47228 * 149.99931 * 3 2 1 35 35 H 1.09000 * 109.47036 * 300.00411 * 6 4 3 36 36 H 1.09002 * 109.47022 * 60.00031 * 6 4 3 37 37 H 1.08999 * 109.47275 * 180.02562 * 7 6 4 38 38 H 1.09000 * 109.46853 * 59.99731 * 7 6 4 39 39 H 1.09002 * 109.46740 * 299.99940 * 8 7 6 40 40 H 1.08994 * 109.47119 * 180.02562 * 8 7 6 41 41 H 1.09000 * 109.47036 * 180.02562 * 9 8 7 42 42 H 1.08997 * 109.46626 * 60.00176 * 9 8 7 43 43 H 0.96697 * 114.00382 * 180.02562 * 12 10 4 44 44 H 0.96999 * 120.00506 * 0.28090 * 17 15 13 45 45 H 1.08994 * 109.47674 * 300.00271 * 18 17 15 46 46 H 1.08998 * 109.47286 * 60.00525 * 18 17 15 47 47 H 1.08994 * 109.47149 * 60.00242 * 20 19 18 48 48 H 1.08998 * 109.46920 * 180.02562 * 20 19 18 49 49 H 1.08998 * 109.47205 * 299.99985 * 20 19 18 50 50 H 1.08994 * 109.47226 * 60.00035 * 21 19 18 51 51 H 1.09010 * 109.46696 * 180.02562 * 21 19 18 52 52 H 1.08999 * 109.47272 * 299.99246 * 21 19 18 53 53 H 0.96997 * 120.00159 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 -1.4424 5 1 2.9642 0.9134 -1.9815 6 6 1.1178 2.0137 -2.1264 7 6 1.3727 2.4550 -3.5691 8 6 2.2442 3.7125 -3.5713 9 6 3.5788 3.4094 -2.8873 10 6 3.3236 2.9683 -1.4441 11 1 2.8120 3.7655 -0.9051 12 8 4.5701 2.6852 -0.8054 13 6 2.1389 -1.1672 -0.0005 14 8 3.3507 -1.1681 0.0653 15 6 1.3940 -2.4602 -0.0820 16 8 0.1812 -2.4653 -0.0410 17 7 2.0689 -3.6201 -0.2066 18 6 1.3384 -4.8870 -0.2925 19 6 2.3335 -6.0414 -0.4269 20 6 3.1705 -5.8483 -1.6931 21 6 3.2545 -6.0656 0.7945 22 6 1.5820 -7.3446 -0.5160 23 1 0.5027 -7.3491 -0.4798 24 6 2.2725 -8.5312 -0.6436 25 7 3.5869 -8.5258 -0.6871 26 14 1.3410 -10.1467 -0.7532 27 1 1.0466 -10.4527 -2.1762 28 1 2.1683 -11.2353 -0.1738 29 1 0.0678 -10.0364 0.0031 30 1 -0.3633 -0.1081 1.0220 31 1 -0.3634 0.9390 -0.4174 32 1 -0.3633 -0.8311 -0.6045 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1385 0.5138 35 1 0.4971 1.1177 -2.1251 36 1 0.6060 2.8110 -1.5873 37 1 0.4219 2.6714 -4.0562 38 1 1.8843 1.6575 -4.1079 39 1 1.7326 4.5100 -3.0324 40 1 2.4254 4.0272 -4.5990 41 1 4.1995 4.3054 -2.8885 42 1 4.0903 2.6119 -3.4262 43 1 5.1742 3.4394 -0.7699 44 1 3.0384 -3.6160 -0.2393 45 1 0.7424 -5.0248 0.6096 46 1 0.6819 -4.8696 -1.1625 47 1 3.7140 -4.9057 -1.6292 48 1 3.8791 -6.6709 -1.7891 49 1 2.5143 -5.8311 -2.5633 50 1 2.6583 -6.2032 1.6965 51 1 3.9638 -6.8878 0.6985 52 1 3.7981 -5.1230 0.8585 53 1 4.0727 -9.3605 -0.7772 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422483527.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:45 Heat of formation + Delta-G solvation = -151.841754 kcal Electronic energy + Delta-G solvation = -31194.224738 eV Core-core repulsion = 27064.678126 eV Total energy + Delta-G solvation = -4129.546611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96022 -40.42738 -39.46711 -38.26880 -37.07466 -36.29861 -34.99083 -32.76195 -32.59784 -30.65259 -28.27824 -28.22977 -27.61152 -27.35596 -26.51690 -24.09451 -23.44385 -22.29686 -21.01128 -20.80688 -20.56671 -18.93775 -18.19849 -17.99159 -17.75451 -17.39679 -16.78226 -16.59224 -16.36833 -16.08330 -15.49641 -15.40907 -15.17567 -14.83277 -14.76150 -14.54554 -14.33986 -14.16148 -14.12480 -13.96907 -13.82404 -13.45964 -13.21748 -13.12492 -12.97217 -12.70620 -12.62314 -12.58329 -12.42497 -12.32157 -12.28198 -12.12474 -11.95416 -11.64481 -11.52275 -11.37653 -11.28482 -11.14699 -10.77184 -10.74619 -10.42082 -10.34297 -10.14330 -9.72954 -8.01908 -6.18774 0.35976 1.32954 1.44321 1.47126 1.55435 2.12440 2.43341 2.56690 3.21936 3.28213 3.35076 3.62743 3.75561 3.95908 4.11631 4.21853 4.27458 4.33582 4.33832 4.40441 4.43374 4.46431 4.53898 4.57544 4.65913 4.68217 4.80851 4.88541 4.94201 4.97917 5.01841 5.02005 5.06760 5.12023 5.15156 5.17304 5.20816 5.27299 5.28801 5.33937 5.39633 5.49333 5.53002 5.62618 5.66618 5.91524 6.08732 6.17292 6.28282 6.39939 6.70356 6.85663 6.95812 6.96938 7.49341 8.97561 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.002276 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.382705 B =12299.810386 C =12468.452253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.577 5.577 3 C 0.118 3.882 4 C -0.093 4.093 5 H 0.042 0.958 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.113 4.113 9 C -0.149 4.149 10 C 0.115 3.885 11 H 0.081 0.919 12 O -0.588 6.588 13 C 0.502 3.498 14 O -0.546 6.546 15 C 0.497 3.503 16 O -0.536 6.536 17 N -0.684 5.684 18 C 0.145 3.855 19 C 0.051 3.949 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.525 4.525 23 H 0.053 0.947 24 C 0.025 3.975 25 N -0.903 5.903 26 Si 0.950 3.050 27 H -0.279 1.279 28 H -0.286 1.286 29 H -0.272 1.272 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.393 0.607 44 H 0.410 0.590 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.026 0.974 48 H 0.063 0.937 49 H 0.024 0.976 50 H 0.024 0.976 51 H 0.063 0.937 52 H 0.026 0.974 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 28.718 -2.724 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.309 5.309 3 C -0.003 4.003 4 C -0.112 4.112 5 H 0.060 0.940 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.150 4.150 9 C -0.187 4.187 10 C 0.056 3.944 11 H 0.098 0.902 12 O -0.396 6.396 13 C 0.284 3.716 14 O -0.424 6.424 15 C 0.278 3.722 16 O -0.416 6.416 17 N -0.335 5.335 18 C 0.022 3.978 19 C 0.050 3.950 20 C -0.181 4.181 21 C -0.182 4.182 22 C -0.564 4.564 23 H 0.071 0.929 24 C -0.174 4.174 25 N -0.541 5.541 26 Si 0.776 3.224 27 H -0.205 1.205 28 H -0.211 1.211 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.242 0.758 44 H 0.248 0.752 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.045 0.955 48 H 0.082 0.918 49 H 0.043 0.957 50 H 0.043 0.957 51 H 0.082 0.918 52 H 0.045 0.955 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.131 27.991 -2.605 28.414 hybrid contribution 0.588 -0.972 -0.214 1.156 sum -3.542 27.020 -2.819 27.396 Atomic orbital electron populations 1.22588 0.76394 1.05308 1.03712 1.47793 1.08999 1.04724 1.69364 1.21753 0.97698 0.83510 0.97334 1.21500 0.96826 0.97146 0.95777 0.93972 1.21705 0.95044 1.02212 0.96097 1.21583 1.00558 0.97724 0.96291 1.21479 0.94678 0.97727 1.01140 1.22250 0.98828 1.01624 0.95962 1.21786 0.84449 0.95639 0.92559 0.90153 1.86583 1.29125 1.42810 1.81080 1.20195 0.87171 0.85810 0.78435 1.90756 1.14479 1.87504 1.49700 1.20302 0.87675 0.85661 0.78589 1.90618 1.13638 1.86941 1.50371 1.46117 1.11807 1.05908 1.69702 1.21541 0.94847 0.81115 1.00287 1.18374 0.92206 0.91320 0.93079 1.21703 0.99819 0.99211 0.97388 1.21711 0.99791 0.99563 0.97142 1.21239 0.92909 0.91481 1.50730 0.92888 1.25524 0.95598 1.01637 0.94688 1.69932 1.06717 1.27164 1.50308 0.85686 0.78718 0.79872 0.78094 1.20462 1.21128 1.19663 0.91893 0.87950 0.89218 0.86896 0.90997 0.91713 0.89044 0.90368 0.93842 0.90047 0.91201 0.89826 0.93399 0.75763 0.75231 0.92686 0.92574 0.95518 0.91768 0.95691 0.95689 0.91769 0.95464 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 8.43 127.77 1.08 2.29 16 2 N -0.58 -14.30 2.70 -848.34 -2.29 -16.59 16 3 C 0.12 2.41 4.82 86.38 0.42 2.83 16 4 C -0.09 -1.73 2.14 -10.80 -0.02 -1.75 16 5 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 6 C -0.11 -1.52 4.19 30.60 0.13 -1.40 16 7 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 8 C -0.11 -1.11 5.92 30.60 0.18 -0.92 16 9 C -0.15 -1.82 5.55 30.61 0.17 -1.65 16 10 C 0.11 1.63 2.90 30.61 0.09 1.71 16 11 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 12 O -0.59 -10.58 12.56 -148.98 -1.87 -12.45 16 13 C 0.50 16.55 7.73 87.27 0.67 17.23 16 14 O -0.55 -20.87 16.05 -3.25 -0.05 -20.92 16 15 C 0.50 17.84 7.77 87.27 0.68 18.51 16 16 O -0.54 -19.76 13.14 -3.24 -0.04 -19.80 16 17 N -0.68 -26.17 4.95 -464.41 -2.30 -28.47 16 18 C 0.14 6.14 4.50 86.38 0.39 6.53 16 19 C 0.05 2.41 0.50 -52.92 -0.03 2.38 16 20 C -0.12 -5.78 8.08 71.98 0.58 -5.20 16 21 C -0.12 -5.85 8.08 71.98 0.58 -5.26 16 22 C -0.53 -27.62 8.01 25.60 0.21 -27.42 16 23 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 24 C 0.03 1.33 5.15 84.66 0.44 1.77 16 25 N -0.90 -49.15 9.35 21.45 0.20 -48.95 16 26 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 28 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 30 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.10 1.28 6.26 -2.39 -0.01 1.26 16 32 H 0.09 2.23 5.36 -2.47 -0.01 2.22 16 33 H 0.11 1.50 8.07 -2.38 -0.02 1.48 16 34 H 0.07 1.89 6.77 -2.39 -0.02 1.87 16 35 H 0.06 1.02 6.00 -2.39 -0.01 1.00 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 43 H 0.39 3.40 9.08 -74.06 -0.67 2.73 16 44 H 0.41 15.74 5.65 -92.71 -0.52 15.22 16 45 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.03 1.11 6.86 -2.39 -0.02 1.09 16 48 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 49 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.06 3.33 6.07 -2.38 -0.01 3.32 16 52 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 53 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -65.13 402.41 1.13 -64.00 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.28 Total: 30.31 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 5.74 Total: 8.26 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -4.39 Total: -94.01 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -1.97 Total: -53.17 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -65.13 1.13 -64.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483527.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.839 kcal (2) G-P(sol) polarization free energy of solvation -65.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds