Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00361 * 2 1 4 4 C 1.53001 * 109.47068 * 270.00146 * 3 2 1 5 5 H 1.08997 * 109.47365 * 55.00158 * 4 3 2 6 6 C 1.53000 * 109.46862 * 294.99329 * 4 3 2 7 7 C 1.53001 * 109.46862 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47044 * 60.00584 * 7 6 4 9 9 C 1.53003 * 109.47144 * 299.99597 * 8 7 6 10 10 C 1.52997 * 109.46723 * 174.99719 * 4 3 2 11 11 H 1.09004 * 109.47237 * 60.00029 * 10 4 3 12 12 O 1.42893 * 109.47681 * 299.99806 * 10 4 3 13 13 C 1.34777 * 119.99658 * 180.02562 * 2 1 3 14 14 O 1.21354 * 119.99807 * 176.32675 * 13 2 1 15 15 C 1.49452 * 120.00410 * 356.31928 * 13 2 1 16 16 O 1.21354 * 119.99394 * 3.19574 * 15 13 2 17 17 N 1.34774 * 120.00371 * 183.19178 * 15 13 2 18 18 C 1.46497 * 120.00235 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.47329 * 179.97438 * 18 17 15 20 20 C 1.52996 * 109.46975 * 300.00154 * 19 18 17 21 21 C 1.53005 * 109.46669 * 59.99899 * 19 18 17 22 22 C 1.50698 * 109.47062 * 179.97438 * 19 18 17 23 23 H 1.08002 * 120.00281 * 1.71541 * 22 19 18 24 24 C 1.37875 * 119.99792 * 181.72008 * 22 19 18 25 25 N 1.31518 * 119.99849 * 192.54233 * 24 22 19 26 26 Si 1.86802 * 120.00109 * 12.54262 * 24 22 19 27 27 H 1.48507 * 109.47032 * 88.13099 * 26 24 22 28 28 H 1.48496 * 109.47106 * 208.12990 * 26 24 22 29 29 H 1.48500 * 109.47016 * 328.13564 * 26 24 22 30 30 H 1.09007 * 109.46992 * 94.80066 * 1 2 3 31 31 H 1.08991 * 109.47373 * 214.79938 * 1 2 3 32 32 H 1.09005 * 109.46794 * 334.80494 * 1 2 3 33 33 H 1.09002 * 109.47022 * 149.99881 * 3 2 1 34 34 H 1.09003 * 109.47011 * 30.00014 * 3 2 1 35 35 H 1.09004 * 109.46941 * 60.00568 * 6 4 3 36 36 H 1.08990 * 109.47611 * 300.00269 * 6 4 3 37 37 H 1.09004 * 109.47240 * 300.00421 * 7 6 4 38 38 H 1.09002 * 109.47053 * 180.02562 * 7 6 4 39 39 H 1.09000 * 109.47286 * 179.97438 * 8 7 6 40 40 H 1.08996 * 109.47570 * 59.99798 * 8 7 6 41 41 H 1.09004 * 109.47272 * 179.97438 * 9 8 7 42 42 H 1.08996 * 109.47051 * 300.00519 * 9 8 7 43 43 H 0.96702 * 114.00478 * 180.02562 * 12 10 4 44 44 H 0.97002 * 120.00034 * 0.02562 * 17 15 13 45 45 H 1.08999 * 109.47014 * 300.00176 * 18 17 15 46 46 H 1.08999 * 109.47309 * 59.99509 * 18 17 15 47 47 H 1.08994 * 109.47398 * 70.35827 * 20 19 18 48 48 H 1.09003 * 109.46974 * 190.35546 * 20 19 18 49 49 H 1.09005 * 109.46845 * 310.35535 * 20 19 18 50 50 H 1.08999 * 109.47150 * 60.00112 * 21 19 18 51 51 H 1.09003 * 109.46266 * 180.02562 * 21 19 18 52 52 H 1.09001 * 109.47106 * 300.00066 * 21 19 18 53 53 H 0.97001 * 119.99542 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5063 1.7550 -1.9815 6 6 3.3825 0.7061 -2.1265 7 6 3.6369 1.1475 -3.5692 8 6 4.2903 2.5309 -3.5716 9 6 3.3604 3.5352 -2.8876 10 6 3.1061 3.0937 -1.4442 11 1 4.0525 3.0492 -0.9052 12 8 2.2378 4.0317 -0.8054 13 6 2.1388 -1.1672 -0.0005 14 8 3.3505 -1.1683 -0.0679 15 6 1.3939 -2.4602 0.0820 16 8 0.1804 -2.4617 0.0909 17 7 2.0698 -3.6245 0.1464 18 6 1.3395 -4.8919 0.2267 19 6 2.3357 -6.0516 0.2879 20 6 3.2060 -6.0432 -0.9704 21 6 3.2244 -5.8957 1.5237 22 6 1.5845 -7.3553 0.3712 23 1 0.5047 -7.3586 0.3516 24 6 2.2758 -8.5440 0.4724 25 7 1.6482 -9.6865 0.2978 26 14 4.1036 -8.5316 0.8574 27 1 4.2994 -8.5336 2.3295 28 1 4.7410 -9.7382 0.2717 29 1 4.7234 -7.3132 0.2774 30 1 -0.3633 -0.0860 -1.0241 31 1 -0.3633 -0.8438 0.5864 32 1 -0.3633 0.9300 0.4375 33 1 3.1500 1.1383 0.5139 34 1 1.6085 2.0284 0.5139 35 1 2.9168 -0.2794 -2.1252 36 1 4.3287 0.6616 -1.5875 37 1 2.6904 1.1917 -4.1080 38 1 4.2990 0.4318 -4.0566 39 1 4.4720 2.8452 -4.5993 40 1 5.2367 2.4868 -3.0328 41 1 3.8261 4.5208 -2.8889 42 1 2.4140 3.5794 -3.4263 43 1 2.5887 4.9321 -0.7706 44 1 3.0398 -3.6232 0.1395 45 1 0.7192 -4.8977 1.1229 46 1 0.7067 -5.0031 -0.6538 47 1 3.8833 -5.1898 -0.9381 48 1 3.7855 -6.9653 -1.0175 49 1 2.5693 -5.9687 -1.8520 50 1 2.6043 -5.9016 2.4201 51 1 3.9344 -6.7216 1.5670 52 1 3.7677 -4.9526 1.4639 53 1 2.1345 -10.5228 0.3694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422483528.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -133.405238 kcal Electronic energy + Delta-G solvation = -31423.668956 eV Core-core repulsion = 27294.921812 eV Total energy + Delta-G solvation = -4128.747144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01761 -40.46679 -39.44834 -38.49343 -36.95632 -36.37054 -34.98189 -33.43929 -32.68370 -30.58524 -28.56594 -28.03698 -28.00521 -27.25552 -26.78058 -24.32376 -23.31333 -22.27740 -21.18879 -20.82832 -20.70742 -18.85302 -18.18285 -18.10602 -17.95515 -17.43805 -17.19094 -16.55715 -16.41224 -16.01595 -15.55303 -15.47022 -15.27574 -14.95500 -14.85130 -14.65993 -14.54584 -14.40051 -14.19981 -14.03821 -13.83493 -13.77714 -13.70588 -13.45074 -13.11130 -12.94782 -12.63648 -12.43575 -12.39855 -12.24359 -12.15052 -12.00555 -12.00265 -11.79454 -11.65104 -11.37721 -11.13739 -11.08086 -10.76427 -10.64643 -10.45076 -10.32132 -10.20213 -9.71976 -8.30202 -6.32205 0.36440 1.32232 1.36501 1.38658 1.49573 2.13565 2.34278 2.51287 3.06080 3.25891 3.33629 3.62416 3.73656 3.94360 4.01403 4.11210 4.24105 4.29001 4.31867 4.32898 4.37746 4.40832 4.44630 4.53845 4.55288 4.66469 4.69924 4.74879 4.78953 4.82586 4.89222 4.91411 4.95063 5.00716 5.03742 5.12845 5.15163 5.18375 5.20517 5.26386 5.31401 5.33094 5.40266 5.47517 5.51062 5.68133 5.74602 5.93489 6.23838 6.30929 6.69054 6.74648 6.93910 6.97270 7.33137 8.86471 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.002477 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.055626 B =11300.960616 C =11959.074089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.579 5.579 3 C 0.121 3.879 4 C -0.089 4.089 5 H 0.071 0.929 6 C -0.102 4.102 7 C -0.123 4.123 8 C -0.115 4.115 9 C -0.144 4.144 10 C 0.118 3.882 11 H 0.063 0.937 12 O -0.579 6.579 13 C 0.507 3.493 14 O -0.532 6.532 15 C 0.497 3.503 16 O -0.538 6.538 17 N -0.683 5.683 18 C 0.154 3.846 19 C 0.027 3.973 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.513 4.513 23 H 0.035 0.965 24 C 0.019 3.981 25 N -0.944 5.944 26 Si 0.938 3.062 27 H -0.283 1.283 28 H -0.314 1.314 29 H -0.206 1.206 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.395 0.605 44 H 0.415 0.585 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.046 0.954 49 H 0.045 0.955 50 H 0.051 0.949 51 H 0.036 0.964 52 H 0.066 0.934 53 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 31.543 -4.314 32.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.311 5.311 3 C -0.001 4.001 4 C -0.109 4.109 5 H 0.089 0.911 6 C -0.140 4.140 7 C -0.161 4.161 8 C -0.152 4.152 9 C -0.182 4.182 10 C 0.059 3.941 11 H 0.080 0.920 12 O -0.388 6.388 13 C 0.289 3.711 14 O -0.410 6.410 15 C 0.278 3.722 16 O -0.417 6.417 17 N -0.335 5.335 18 C 0.031 3.969 19 C 0.026 3.974 20 C -0.200 4.200 21 C -0.207 4.207 22 C -0.551 4.551 23 H 0.054 0.946 24 C -0.178 4.178 25 N -0.584 5.584 26 Si 0.768 3.232 27 H -0.210 1.210 28 H -0.244 1.244 29 H -0.130 1.130 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.245 0.755 44 H 0.253 0.747 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.055 0.945 52 H 0.084 0.916 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.446 30.843 -4.283 31.612 hybrid contribution 0.925 -0.663 0.103 1.143 sum 6.371 30.180 -4.180 31.127 Atomic orbital electron populations 1.22514 0.76840 1.05293 1.03373 1.47794 1.08833 1.04980 1.69463 1.21782 0.97826 0.83160 0.97304 1.21481 0.99510 0.93992 0.95894 0.91098 1.21483 0.99272 0.97203 0.96020 1.21593 1.00858 0.97628 0.95992 1.21474 0.98583 0.93827 1.01329 1.22218 1.00446 0.99801 0.95730 1.21656 0.92217 0.87649 0.92605 0.91953 1.86455 1.48255 1.23139 1.80959 1.19970 0.87292 0.85301 0.78519 1.90733 1.13680 1.87301 1.49241 1.20388 0.87654 0.85840 0.78332 1.90627 1.14109 1.86963 1.50038 1.45992 1.11788 1.05240 1.70511 1.21290 0.94247 0.80472 1.00900 1.18672 0.93057 0.92338 0.93363 1.22241 0.99057 1.00619 0.98082 1.22345 0.99170 1.00097 0.99080 1.20971 0.93324 0.90255 1.50533 0.94627 1.25789 1.03020 0.94798 0.94211 1.70090 1.39167 0.98550 1.50555 0.86434 0.81146 0.77389 0.78255 1.21031 1.24369 1.13022 0.92469 0.88529 0.88984 0.90393 0.87743 0.94002 0.91910 0.92361 0.92016 0.90766 0.91466 0.89678 0.91793 0.75459 0.74743 0.92308 0.92602 0.92348 0.93541 0.93609 0.92950 0.94530 0.91567 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 9.69 127.77 1.24 2.49 16 2 N -0.58 -13.12 2.76 -848.32 -2.34 -15.46 16 3 C 0.12 2.23 4.96 86.38 0.43 2.66 16 4 C -0.09 -1.52 2.14 -10.79 -0.02 -1.54 16 5 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.10 -2.02 3.90 30.59 0.12 -1.90 16 7 C -0.12 -1.99 5.92 30.59 0.18 -1.81 16 8 C -0.11 -1.33 5.92 30.59 0.18 -1.15 16 9 C -0.14 -1.46 5.55 30.62 0.17 -1.29 16 10 C 0.12 1.45 2.90 30.61 0.09 1.54 16 11 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 12 O -0.58 -6.60 12.56 -148.98 -1.87 -8.47 16 13 C 0.51 14.15 6.44 87.27 0.56 14.71 16 14 O -0.53 -15.85 13.99 -3.26 -0.05 -15.89 16 15 C 0.50 15.80 7.79 87.27 0.68 16.48 16 16 O -0.54 -18.78 13.08 -3.26 -0.04 -18.82 16 17 N -0.68 -22.26 5.00 -464.41 -2.32 -24.58 16 18 C 0.15 5.96 4.48 86.38 0.39 6.35 16 19 C 0.03 1.14 0.50 -52.93 -0.03 1.11 16 20 C -0.14 -5.56 7.48 71.98 0.54 -5.02 16 21 C -0.15 -5.77 7.50 71.98 0.54 -5.23 16 22 C -0.51 -27.81 8.62 25.60 0.22 -27.59 16 23 H 0.04 2.17 7.99 -2.91 -0.02 2.14 16 24 C 0.02 1.10 5.34 84.65 0.45 1.55 16 25 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 26 Si 0.94 42.99 22.81 68.60 1.56 44.56 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 28 H -0.31 -14.84 7.11 99.48 0.71 -14.14 16 29 H -0.21 -8.15 4.53 99.48 0.45 -7.70 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.10 2.41 5.17 -6.31 -0.03 2.38 16 32 H 0.09 1.37 7.84 -2.38 -0.02 1.35 16 33 H 0.08 1.56 7.48 -2.39 -0.02 1.54 16 34 H 0.10 1.66 7.25 -2.39 -0.02 1.64 16 35 H 0.04 1.05 5.98 -2.39 -0.01 1.03 16 36 H 0.06 1.34 7.94 -2.39 -0.02 1.32 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.40 1.21 9.08 -74.06 -0.67 0.54 16 44 H 0.41 12.49 5.75 -92.71 -0.53 11.96 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.06 1.89 7.15 -2.39 -0.02 1.87 16 48 H 0.05 1.91 4.32 -2.39 -0.01 1.90 16 49 H 0.04 1.78 8.11 -2.38 -0.02 1.76 16 50 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.04 1.46 2.25 -2.39 -0.01 1.46 16 52 H 0.07 2.09 6.86 -2.39 -0.02 2.07 16 53 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -67.43 391.23 0.42 -67.01 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.56 Total: 28.15 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.74 Total: 1.36 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -4.36 Total: -97.90 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -1.96 Total: -43.18 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.56 Total: 44.56 kcal Total: -67.43 0.42 -67.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483528.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.397 kcal (2) G-P(sol) polarization free energy of solvation -67.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds