Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 119.99828 * 2 1 4 4 C 1.52998 * 109.47267 * 269.99560 * 3 2 1 5 5 H 1.08999 * 109.46527 * 55.00104 * 4 3 2 6 6 C 1.52997 * 109.47243 * 295.00593 * 4 3 2 7 7 C 1.52999 * 109.46932 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47350 * 59.99833 * 7 6 4 9 9 C 1.52997 * 109.47239 * 299.99978 * 8 7 6 10 10 C 1.52999 * 109.46932 * 59.99765 * 9 8 7 11 11 H 1.09008 * 109.47022 * 180.02562 * 10 9 8 12 12 O 1.42897 * 109.47290 * 60.00457 * 10 9 8 13 13 C 1.34776 * 119.99682 * 179.97438 * 2 1 3 14 14 O 1.21352 * 119.99433 * 176.74212 * 13 2 1 15 15 C 1.49451 * 120.00429 * 356.74871 * 13 2 1 16 16 O 1.21348 * 119.99500 * 5.94373 * 15 13 2 17 17 N 1.34771 * 120.00267 * 185.94984 * 15 13 2 18 18 C 1.46493 * 120.00439 * 179.97438 * 17 15 13 19 19 C 1.52994 * 109.47451 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47187 * 299.99726 * 19 18 17 21 21 C 1.52992 * 109.47455 * 59.99872 * 19 18 17 22 22 C 1.50703 * 109.47453 * 179.97438 * 19 18 17 23 23 H 1.08003 * 119.99751 * 355.39388 * 22 19 18 24 24 C 1.37873 * 120.00207 * 175.38990 * 22 19 18 25 25 N 1.31514 * 120.00079 * 5.23987 * 24 22 19 26 26 Si 1.86806 * 119.99862 * 185.24392 * 24 22 19 27 27 H 1.48498 * 109.47195 * 95.00007 * 26 24 22 28 28 H 1.48502 * 109.46931 * 214.99790 * 26 24 22 29 29 H 1.48496 * 109.47088 * 334.99749 * 26 24 22 30 30 H 1.08992 * 109.47027 * 95.93555 * 1 2 3 31 31 H 1.08996 * 109.47223 * 215.93735 * 1 2 3 32 32 H 1.09001 * 109.47312 * 335.93401 * 1 2 3 33 33 H 1.09008 * 109.46924 * 149.99812 * 3 2 1 34 34 H 1.09002 * 109.47507 * 29.99837 * 3 2 1 35 35 H 1.09001 * 109.47355 * 59.99495 * 6 4 3 36 36 H 1.08999 * 109.46960 * 299.99247 * 6 4 3 37 37 H 1.09004 * 109.47309 * 299.99351 * 7 6 4 38 38 H 1.09008 * 109.47022 * 179.97438 * 7 6 4 39 39 H 1.08997 * 109.46886 * 60.00029 * 8 7 6 40 40 H 1.09000 * 109.46994 * 179.97438 * 8 7 6 41 41 H 1.08991 * 109.47333 * 180.02562 * 9 8 7 42 42 H 1.08999 * 109.46960 * 300.00299 * 9 8 7 43 43 H 0.96698 * 114.00268 * 59.99214 * 12 10 9 44 44 H 0.97012 * 119.99571 * 359.97438 * 17 15 13 45 45 H 1.09005 * 109.47102 * 299.99807 * 18 17 15 46 46 H 1.09004 * 109.46888 * 59.99496 * 18 17 15 47 47 H 1.08999 * 109.47017 * 64.91214 * 20 19 18 48 48 H 1.08999 * 109.47505 * 184.91297 * 20 19 18 49 49 H 1.09003 * 109.47432 * 304.90957 * 20 19 18 50 50 H 1.08998 * 109.47378 * 59.99864 * 21 19 18 51 51 H 1.09000 * 109.47602 * 179.97438 * 21 19 18 52 52 H 1.09001 * 109.47270 * 300.00558 * 21 19 18 53 53 H 0.97003 * 119.99794 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5062 1.7548 -1.9815 6 6 3.3823 0.7061 -2.1265 7 6 3.6369 1.1475 -3.5691 8 6 4.2902 2.5310 -3.5715 9 6 3.3604 3.5352 -2.8875 10 6 3.1059 3.0939 -1.4449 11 1 2.4431 3.8091 -0.9576 12 8 4.3467 3.0359 -0.7385 13 6 2.1389 -1.1672 0.0005 14 8 3.3509 -1.1681 -0.0592 15 6 1.3934 -2.4605 0.0745 16 8 0.1810 -2.4655 0.0253 17 7 2.0678 -3.6210 0.1960 18 6 1.3371 -4.8886 0.2691 19 6 2.3316 -6.0436 0.4025 20 6 3.2604 -6.0598 -0.8132 21 6 3.1604 -5.8586 1.6751 22 6 1.5799 -7.3476 0.4783 23 1 0.5003 -7.3474 0.5106 24 6 2.2703 -8.5407 0.5063 25 7 3.5838 -8.5390 0.5709 26 14 1.3398 -10.1596 0.4523 27 1 1.2676 -10.6425 -0.9502 28 1 2.0467 -11.1648 1.2860 29 1 -0.0343 -9.9586 0.9780 30 1 -0.3633 -0.1063 -1.0221 31 1 -0.3633 -0.8320 0.6031 32 1 -0.3634 0.9383 0.4191 33 1 3.1500 1.1384 0.5139 34 1 1.6084 2.0284 0.5138 35 1 2.9168 -0.2795 -2.1252 36 1 4.3287 0.6617 -1.5875 37 1 2.6904 1.1916 -4.1080 38 1 4.2997 0.4323 -4.0564 39 1 5.2366 2.4868 -3.0328 40 1 4.4719 2.8452 -4.5993 41 1 3.8256 4.5209 -2.8896 42 1 2.4139 3.5794 -3.4263 43 1 4.8171 3.8799 -0.6999 44 1 3.0371 -3.6169 0.2350 45 1 0.6750 -4.8769 1.1349 46 1 0.7470 -5.0206 -0.6378 47 1 3.8671 -5.1543 -0.8189 48 1 3.9111 -6.9328 -0.7618 49 1 2.6648 -6.1039 -1.7251 50 1 2.4987 -5.8471 2.5412 51 1 3.8686 -6.6817 1.7704 52 1 3.7040 -4.9155 1.6208 53 1 4.0695 -9.3784 0.5902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422483529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -148.910033 kcal Electronic energy + Delta-G solvation = -31437.211345 eV Core-core repulsion = 27307.791862 eV Total energy + Delta-G solvation = -4129.419482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97882 -40.46420 -39.43038 -38.26040 -36.93434 -35.85960 -34.98381 -32.76014 -32.66553 -30.80547 -28.28934 -27.98768 -27.60916 -27.37556 -26.64161 -24.21644 -23.35346 -22.30488 -20.99099 -20.64458 -20.56642 -18.87770 -18.02964 -17.79197 -17.70426 -17.42288 -16.75327 -16.60344 -16.40165 -15.96471 -15.62205 -15.42200 -15.17265 -14.87722 -14.79957 -14.60016 -14.38104 -14.13052 -14.05686 -13.68107 -13.51424 -13.39884 -13.23418 -13.11370 -13.01811 -12.75513 -12.69426 -12.58394 -12.45120 -12.31673 -12.24388 -12.11735 -11.89736 -11.60603 -11.52419 -11.45211 -11.27618 -10.99806 -10.76467 -10.57549 -10.40203 -10.34117 -10.13896 -9.69818 -8.02558 -6.18887 0.39291 1.36009 1.43853 1.47192 1.55475 2.15320 2.43776 2.59015 3.21028 3.36254 3.41700 3.71881 3.80292 3.90040 4.13464 4.23930 4.33704 4.34284 4.37913 4.46202 4.46890 4.52642 4.59759 4.60272 4.66011 4.71425 4.77980 4.88677 4.96537 4.98878 5.01918 5.03920 5.07327 5.08134 5.15488 5.22967 5.25599 5.30820 5.31858 5.38418 5.43523 5.51191 5.60076 5.61761 5.66745 5.94631 6.09133 6.17806 6.30288 6.40578 6.73608 6.85718 6.99053 7.03838 7.48981 8.96824 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002352 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.593032 B =11899.784305 C =12394.167011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.580 5.580 3 C 0.120 3.880 4 C -0.092 4.092 5 H 0.093 0.907 6 C -0.097 4.097 7 C -0.121 4.121 8 C -0.112 4.112 9 C -0.145 4.145 10 C 0.116 3.884 11 H 0.080 0.920 12 O -0.579 6.579 13 C 0.503 3.497 14 O -0.537 6.537 15 C 0.494 3.506 16 O -0.539 6.539 17 N -0.684 5.684 18 C 0.145 3.855 19 C 0.051 3.949 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.525 4.525 23 H 0.052 0.948 24 C 0.026 3.974 25 N -0.901 5.901 26 Si 0.949 3.051 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.272 1.272 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.028 0.972 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.390 0.610 44 H 0.411 0.589 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.026 0.974 48 H 0.068 0.932 49 H 0.022 0.978 50 H 0.025 0.975 51 H 0.060 0.940 52 H 0.027 0.973 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 27.988 -4.864 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.312 5.312 3 C -0.001 4.001 4 C -0.111 4.111 5 H 0.111 0.889 6 C -0.135 4.135 7 C -0.159 4.159 8 C -0.150 4.150 9 C -0.183 4.183 10 C 0.057 3.943 11 H 0.098 0.902 12 O -0.387 6.387 13 C 0.286 3.714 14 O -0.414 6.414 15 C 0.276 3.724 16 O -0.418 6.418 17 N -0.335 5.335 18 C 0.022 3.978 19 C 0.051 3.949 20 C -0.185 4.185 21 C -0.180 4.180 22 C -0.564 4.564 23 H 0.071 0.929 24 C -0.174 4.174 25 N -0.540 5.540 26 Si 0.776 3.224 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.196 1.196 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.240 0.760 44 H 0.248 0.752 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.041 0.959 50 H 0.044 0.956 51 H 0.079 0.921 52 H 0.046 0.954 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.441 27.225 -4.840 27.759 hybrid contribution 0.324 -0.980 -0.157 1.044 sum -2.117 26.245 -4.997 26.800 Atomic orbital electron populations 1.22455 0.76489 1.05180 1.03467 1.47816 1.08934 1.04872 1.69591 1.21795 0.97568 0.83306 0.97452 1.21617 0.98918 0.94838 0.95775 0.88923 1.21359 0.99347 0.96944 0.95872 1.21565 1.00669 0.97618 0.96014 1.21408 0.98937 0.94061 1.00566 1.22214 1.00905 0.99203 0.95983 1.21727 0.85785 0.95021 0.91787 0.90216 1.86571 1.35771 1.39038 1.77305 1.20062 0.87256 0.85588 0.78532 1.90764 1.14145 1.87348 1.49151 1.20398 0.87700 0.85826 0.78515 1.90622 1.13816 1.87053 1.50353 1.46100 1.11829 1.05808 1.69784 1.21534 0.94843 0.81188 1.00215 1.18365 0.92204 0.91288 0.93090 1.21729 0.99483 1.00372 0.96916 1.21702 0.99688 0.99109 0.97469 1.21247 0.92886 0.91141 1.51082 0.92938 1.25514 0.95605 1.01659 0.94636 1.69936 1.06836 1.26871 1.50350 0.85684 0.78897 0.80058 0.77801 1.20554 1.21120 1.19625 0.92184 0.89450 0.88082 0.91092 0.86973 0.95307 0.93227 0.91810 0.93345 0.92472 0.91392 0.89683 0.90303 0.76018 0.75202 0.92653 0.92829 0.95516 0.91304 0.95891 0.95562 0.92128 0.95382 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 9.58 127.77 1.22 2.52 16 2 N -0.58 -13.96 2.76 -848.35 -2.34 -16.30 16 3 C 0.12 2.32 4.82 86.38 0.42 2.74 16 4 C -0.09 -1.60 2.23 -10.79 -0.02 -1.63 16 5 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 6 C -0.10 -2.37 3.76 30.59 0.11 -2.26 16 7 C -0.12 -2.41 5.92 30.59 0.18 -2.22 16 8 C -0.11 -1.67 5.78 30.59 0.18 -1.50 16 9 C -0.15 -1.46 5.64 30.59 0.17 -1.29 16 10 C 0.12 1.39 3.21 30.59 0.10 1.48 16 11 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 12 O -0.58 -8.54 11.39 -148.98 -1.70 -10.24 16 13 C 0.50 16.03 6.43 87.27 0.56 16.59 16 14 O -0.54 -19.31 14.03 -3.25 -0.05 -19.36 16 15 C 0.49 17.58 7.77 87.27 0.68 18.25 16 16 O -0.54 -19.91 13.15 -3.24 -0.04 -19.95 16 17 N -0.68 -25.93 4.98 -464.43 -2.31 -28.24 16 18 C 0.14 6.14 4.50 86.38 0.39 6.53 16 19 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 20 C -0.13 -5.98 8.03 71.98 0.58 -5.41 16 21 C -0.12 -5.67 8.12 71.98 0.58 -5.08 16 22 C -0.53 -27.61 8.01 25.60 0.21 -27.41 16 23 H 0.05 2.76 7.75 -2.91 -0.02 2.74 16 24 C 0.03 1.35 5.12 84.65 0.43 1.78 16 25 N -0.90 -48.97 9.36 21.45 0.20 -48.77 16 26 Si 0.95 42.56 29.54 68.60 2.03 44.59 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 29 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 2.18 5.37 -2.42 -0.01 2.17 16 32 H 0.10 1.21 7.83 -2.39 -0.02 1.19 16 33 H 0.07 1.77 7.16 -2.38 -0.02 1.75 16 34 H 0.11 1.39 7.86 -2.39 -0.02 1.37 16 35 H 0.03 0.86 6.00 -2.39 -0.01 0.84 16 36 H 0.05 1.48 7.49 -2.39 -0.02 1.46 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.06 0.99 7.68 -2.39 -0.02 0.97 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.39 2.42 9.08 -74.06 -0.67 1.75 16 44 H 0.41 15.52 5.69 -92.70 -0.53 15.00 16 45 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 46 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 47 H 0.03 1.12 7.01 -2.39 -0.02 1.10 16 48 H 0.07 3.59 5.78 -2.39 -0.01 3.57 16 49 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.06 3.11 6.25 -2.39 -0.01 3.10 16 52 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 53 H 0.26 13.61 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -63.76 399.77 1.26 -62.50 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.29 Total: 30.27 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.76 Total: 5.51 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -4.45 Total: -93.31 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -1.79 Total: -49.55 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -63.76 1.26 -62.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.410 kcal (2) G-P(sol) polarization free energy of solvation -63.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds