Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00026 * 2 1 4 4 O 1.20829 * 119.99548 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00214 * 179.97438 * 3 2 1 6 6 H 1.09010 * 110.35081 * 9.63402 * 5 3 2 7 7 C 1.54599 * 110.31062 * 131.77038 * 5 3 2 8 8 C 1.54943 * 102.92043 * 140.87294 * 7 5 3 9 9 N 1.48535 * 103.22475 * 322.59233 * 8 7 5 10 10 C 1.46901 * 110.99434 * 159.71941 * 9 8 7 11 11 C 1.53004 * 109.47204 * 58.51102 * 10 9 8 12 12 C 1.50696 * 109.47068 * 179.97438 * 11 10 9 13 13 O 1.21287 * 120.00237 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00337 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99476 * 359.97438 * 14 12 11 16 16 C 1.46496 * 120.00434 * 179.97438 * 14 12 11 17 17 C 1.50699 * 109.47239 * 89.99708 * 16 14 12 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00205 * 179.97438 * 17 16 14 20 20 N 1.31513 * 119.99729 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47357 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47158 * 240.00318 * 21 19 17 24 24 H 1.48501 * 109.47045 * 120.00392 * 21 19 17 25 25 C 1.47892 * 105.82429 * 39.20597 * 9 8 7 26 26 H 1.09004 * 109.92020 * 94.01683 * 25 9 8 27 27 C 1.52998 * 109.91922 * 215.31309 * 25 9 8 28 28 C 1.52997 * 109.47586 * 187.62468 * 27 25 9 29 29 C 1.53001 * 109.47317 * 307.63064 * 27 25 9 30 30 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47209 * 300.00045 * 1 2 3 32 32 H 1.08999 * 109.46831 * 60.00612 * 1 2 3 33 33 H 1.08996 * 110.72978 * 259.23612 * 7 5 3 34 34 H 1.08998 * 110.71863 * 22.34242 * 7 5 3 35 35 H 1.09000 * 110.66762 * 204.15418 * 8 7 5 36 36 H 1.09005 * 110.66263 * 81.02477 * 8 7 5 37 37 H 1.08999 * 109.47687 * 298.50712 * 10 9 8 38 38 H 1.09003 * 109.46710 * 178.50723 * 10 9 8 39 39 H 1.09003 * 109.47280 * 59.99753 * 11 10 9 40 40 H 1.09003 * 109.46978 * 299.99457 * 11 10 9 41 41 H 1.09001 * 109.46973 * 269.99895 * 15 14 12 42 42 H 1.09000 * 109.47330 * 30.00444 * 15 14 12 43 43 H 1.09000 * 109.47251 * 150.00147 * 15 14 12 44 44 H 1.08997 * 109.47374 * 329.99838 * 16 14 12 45 45 H 1.09001 * 109.47117 * 209.99949 * 16 14 12 46 46 H 0.96998 * 120.00089 * 359.97438 * 20 19 17 47 47 H 1.09007 * 109.46849 * 67.63028 * 27 25 9 48 48 H 1.09008 * 109.46693 * 54.06231 * 28 27 25 49 49 H 1.08997 * 109.47511 * 174.05729 * 28 27 25 50 50 H 1.09005 * 109.47632 * 294.06607 * 28 27 25 51 51 H 1.09004 * 109.46932 * 67.56730 * 29 27 25 52 52 H 1.09001 * 109.47212 * 187.56749 * 29 27 25 53 53 H 1.09004 * 109.46787 * 307.56977 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9977 0.2885 -0.1701 7 6 4.0520 2.2673 -1.0808 8 6 5.2347 2.9867 -0.3846 9 7 4.7723 3.1187 1.0207 10 6 5.9063 3.3313 1.9301 11 6 6.6665 4.5913 1.5115 12 6 7.8294 4.8097 2.4447 13 8 8.0301 4.0341 3.3554 14 7 8.6465 5.8668 2.2675 15 6 8.4044 6.8033 1.1672 16 6 9.7767 6.0794 3.1751 17 6 10.9927 5.3696 2.6380 18 1 10.9301 4.8159 1.7128 19 6 12.1855 5.4279 3.3271 20 7 12.2619 6.1026 4.4534 21 14 13.6930 4.5487 2.6609 22 1 13.3464 3.8674 1.3877 23 1 14.1574 3.5434 3.6504 24 1 14.7738 5.5369 2.4146 25 6 4.0706 1.8553 1.3348 26 1 4.7597 1.1553 1.8073 27 6 2.8865 2.1335 2.2629 28 6 2.2846 0.8079 2.7332 29 6 3.3659 2.9345 3.4752 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 4.3932 1.7344 -1.9682 34 1 3.2635 2.9749 -1.3369 35 1 5.4028 3.9681 -0.8282 36 1 6.1386 2.3797 -0.4369 37 1 6.5748 2.4716 1.8845 38 1 5.5375 3.4511 2.9488 39 1 5.9980 5.4511 1.5572 40 1 7.0353 4.4715 0.4928 41 1 8.9437 6.4694 0.2807 42 1 7.3369 6.8410 0.9505 43 1 8.7526 7.7961 1.4519 44 1 9.5308 5.6837 4.1605 45 1 9.9839 7.1466 3.2535 46 1 11.4792 6.5595 4.7991 47 1 2.1302 2.7055 1.7254 48 1 3.0661 0.1912 3.1773 49 1 1.5104 1.0032 3.4752 50 1 1.8485 0.2845 1.8822 51 1 3.6702 3.9310 3.1549 52 1 2.5555 3.0173 4.1995 53 1 4.2134 2.4259 3.9347 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429363935.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -137.114277 kcal Electronic energy + Delta-G solvation = -31390.688973 eV Core-core repulsion = 27261.780993 eV Total energy + Delta-G solvation = -4128.907980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35534 -40.87791 -39.91277 -37.49063 -36.81508 -35.85150 -35.02486 -34.51106 -31.20616 -29.74036 -29.15968 -28.32067 -28.08245 -27.27573 -25.71479 -24.42055 -23.62314 -22.13480 -21.68090 -20.81026 -19.98434 -19.06640 -18.62999 -18.17830 -17.90069 -17.53080 -17.11153 -16.78455 -16.52042 -15.93563 -15.81706 -15.62303 -15.14516 -14.91105 -14.67125 -14.40062 -14.26389 -14.06952 -13.89303 -13.72407 -13.58355 -13.49845 -13.39268 -13.32739 -13.15471 -13.03037 -12.92735 -12.86547 -12.54499 -12.48313 -12.42884 -12.20740 -12.03564 -11.97261 -11.96716 -11.73998 -11.46335 -11.40578 -11.20764 -11.00859 -10.71307 -10.63047 -9.49088 -9.46062 -8.70853 -6.46685 1.11714 1.47935 1.58567 1.71019 1.73658 1.76015 2.21149 2.52223 2.87542 3.08456 3.33508 3.42459 3.70699 3.80562 3.93191 3.96185 4.06817 4.08203 4.15901 4.27121 4.31430 4.32645 4.34119 4.36572 4.42168 4.52262 4.56031 4.63870 4.68338 4.70354 4.72394 4.77059 4.84738 4.86774 4.88982 4.90373 4.93138 4.93875 4.99543 5.01983 5.11068 5.16290 5.29708 5.38532 5.48634 5.53847 5.80461 5.86617 5.94857 6.12679 6.43306 6.66013 6.73534 7.27174 7.39915 8.63922 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.002271 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.490506 B =12324.730690 C =12460.153685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.483 3.517 4 O -0.520 6.520 5 C -0.093 4.093 6 H 0.126 0.874 7 C -0.103 4.103 8 C 0.028 3.972 9 N -0.508 5.508 10 C 0.066 3.934 11 C -0.116 4.116 12 C 0.496 3.504 13 O -0.599 6.599 14 N -0.609 5.609 15 C 0.081 3.919 16 C 0.244 3.756 17 C -0.614 4.614 18 H 0.045 0.955 19 C -0.035 4.035 20 N -0.932 5.932 21 Si 1.124 2.876 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.086 3.914 26 H 0.065 0.935 27 C -0.104 4.104 28 C -0.166 4.166 29 C -0.138 4.138 30 H 0.129 0.871 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.068 0.932 44 H -0.008 1.008 45 H 0.018 0.982 46 H 0.255 0.745 47 H 0.086 0.914 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.056 0.944 52 H 0.055 0.945 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.445 -10.657 -14.849 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.327 3.673 4 O -0.409 6.409 5 C -0.113 4.113 6 H 0.144 0.856 7 C -0.141 4.141 8 C -0.099 4.099 9 N -0.232 5.232 10 C -0.063 4.063 11 C -0.156 4.156 12 C 0.285 3.715 13 O -0.481 6.481 14 N -0.340 5.340 15 C -0.061 4.061 16 C 0.122 3.878 17 C -0.652 4.652 18 H 0.063 0.937 19 C -0.232 4.232 20 N -0.569 5.569 21 Si 0.945 3.055 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.194 1.194 25 C -0.023 4.023 26 H 0.083 0.917 27 C -0.122 4.122 28 C -0.223 4.223 29 C -0.195 4.195 30 H 0.147 0.853 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.087 0.913 44 H 0.010 0.990 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.088 0.912 51 H 0.075 0.925 52 H 0.074 0.926 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.332 -10.577 -14.026 29.206 hybrid contribution -1.021 -0.013 0.400 1.097 sum -24.353 -10.589 -13.626 29.847 Atomic orbital electron populations 1.23527 0.75020 1.05615 1.02556 1.86546 1.24836 1.33058 1.83530 1.23375 0.91866 0.81230 0.70796 1.90628 1.67480 1.37040 1.45775 1.22062 0.87729 1.03657 0.97845 0.85609 1.22557 0.98095 0.96826 0.96644 1.23416 0.96544 1.02014 0.87967 1.64724 1.22786 1.32914 1.02767 1.22017 0.90781 0.95789 0.97673 1.21574 0.93968 1.00975 0.99067 1.21401 0.84332 0.80077 0.85713 1.90635 1.75068 1.46291 1.36117 1.48043 1.27969 1.26700 1.31259 1.21939 1.03004 0.92583 0.88617 1.18903 0.84662 0.95171 0.89093 1.22558 0.96977 1.35327 1.10372 0.93698 1.27408 1.04873 0.96663 0.94302 1.70865 1.32913 1.32382 1.20783 0.82849 0.71817 0.75482 0.75327 1.19804 1.20814 1.19418 1.22324 0.95775 0.90560 0.93606 0.91677 1.21506 0.97033 0.97384 0.96301 1.22218 1.01339 0.96565 1.02192 1.21812 1.00402 1.00239 0.97047 0.85252 0.92129 0.91789 0.87467 0.90264 0.87864 0.92691 0.95565 0.90468 0.86221 0.86981 0.92275 0.87880 0.91328 0.99029 0.96365 0.93534 0.89646 0.92116 0.91978 0.91171 0.92475 0.92572 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.37 113.37 1.18 1.45 16 2 O -0.36 -5.63 8.84 -51.45 -0.45 -6.08 16 3 C 0.48 8.91 4.07 71.23 0.29 9.20 16 4 O -0.52 -12.31 13.72 21.95 0.30 -12.01 16 5 C -0.09 -1.50 3.36 -10.66 -0.04 -1.54 16 6 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 7 C -0.10 -1.47 6.56 31.80 0.21 -1.26 16 8 C 0.03 0.46 5.35 86.65 0.46 0.93 16 9 N -0.51 -11.00 4.49 -858.08 -3.86 -14.86 16 10 C 0.07 1.80 3.62 86.30 0.31 2.12 16 11 C -0.12 -3.17 4.07 29.85 0.12 -3.05 16 12 C 0.50 20.57 7.67 87.66 0.67 21.24 16 13 O -0.60 -31.22 15.56 -3.05 -0.05 -31.27 16 14 N -0.61 -26.02 2.86 -851.14 -2.43 -28.45 16 15 C 0.08 2.38 10.28 127.77 1.31 3.70 16 16 C 0.24 13.27 4.51 85.63 0.39 13.66 16 17 C -0.61 -36.11 9.39 25.60 0.24 -35.87 16 18 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 19 C -0.03 -2.04 5.46 84.66 0.46 -1.58 16 20 N -0.93 -58.63 13.65 21.45 0.29 -58.34 16 21 Si 1.12 51.69 29.90 68.60 2.05 53.74 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 C 0.09 1.75 2.18 45.06 0.10 1.85 16 26 H 0.07 1.38 7.65 -2.39 -0.02 1.37 16 27 C -0.10 -2.22 2.21 -10.79 -0.02 -2.24 16 28 C -0.17 -3.01 8.78 71.98 0.63 -2.37 16 29 C -0.14 -3.22 7.57 71.98 0.54 -2.68 16 30 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.34 7.30 -2.39 -0.02 1.32 16 35 H 0.10 1.49 7.66 -2.39 -0.02 1.47 16 36 H 0.05 0.92 8.01 -2.38 -0.02 0.90 16 37 H 0.03 0.81 7.93 -2.39 -0.02 0.79 16 38 H 0.08 2.38 5.06 -2.39 -0.01 2.37 16 39 H 0.12 2.72 7.40 -2.39 -0.02 2.70 16 40 H 0.11 2.53 6.87 -2.39 -0.02 2.51 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.10 2.14 6.44 -2.39 -0.02 2.13 16 43 H 0.07 2.00 7.89 -2.39 -0.02 1.98 16 44 H -0.01 -0.52 7.29 -2.39 -0.02 -0.53 16 45 H 0.02 1.00 7.76 -2.39 -0.02 0.98 16 46 H 0.26 16.26 7.22 -92.71 -0.67 15.59 16 47 H 0.09 2.13 5.35 -2.38 -0.01 2.12 16 48 H 0.06 1.07 8.13 -2.38 -0.02 1.05 16 49 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 50 H 0.07 1.19 3.95 -2.38 -0.01 1.19 16 51 H 0.06 1.45 6.84 -2.38 -0.02 1.44 16 52 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 53 H 0.04 1.08 7.34 -2.38 -0.02 1.06 16 Total: -1.00 -80.04 404.79 3.71 -76.33 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.99 Total: 17.39 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.86 Total: 3.54 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -6.00 Total: -101.65 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -0.20 Total: -49.36 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Total: -80.04 3.71 -76.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429363935.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.782 kcal (2) G-P(sol) polarization free energy of solvation -80.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds