Wall clock time and date at job start Sat Apr 11 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46746 * 2 1 4 4 C 1.53006 * 109.46699 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46699 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46898 * 55.00783 * 5 4 3 7 7 C 1.53005 * 109.46748 * 174.99758 * 5 4 3 8 8 N 1.46505 * 109.46904 * 175.00140 * 7 5 4 9 9 C 1.36931 * 119.99788 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 7 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48496 * 109.47141 * 59.99751 * 13 11 9 15 15 H 1.48490 * 109.47071 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 300.00028 * 13 11 9 17 17 N 1.46500 * 109.47415 * 295.00180 * 5 4 3 18 18 C 1.34772 * 119.99996 * 85.00260 * 17 5 4 19 19 O 1.21281 * 120.00096 * 359.97438 * 18 17 5 20 20 C 1.50699 * 120.00053 * 179.97438 * 18 17 5 21 21 H 1.08989 * 110.37273 * 304.30011 * 20 18 17 22 22 O 1.43927 * 110.41876 * 181.92269 * 20 18 17 23 23 C 1.43765 * 109.64281 * 215.17438 * 22 20 18 24 24 C 1.53682 * 106.82647 * 1.35276 * 23 22 20 25 25 H 1.08999 * 109.73707 * 267.34952 * 24 23 22 26 26 C 1.51241 * 112.32764 * 144.98823 * 24 23 22 27 27 O 1.42706 * 111.49454 * 294.99670 * 26 24 23 28 28 C 1.43195 * 112.74959 * 299.55059 * 27 26 24 29 29 C 1.52763 * 108.43272 * 64.92188 * 28 27 26 30 30 C 1.53315 * 110.46991 * 299.97854 * 29 28 27 31 31 H 1.08994 * 113.58747 * 283.60214 * 30 29 28 32 32 H 1.09001 * 109.47782 * 59.99969 * 1 2 3 33 33 H 1.08996 * 109.47334 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47417 * 299.99843 * 1 2 3 35 35 H 1.08998 * 109.47149 * 240.00566 * 2 1 3 36 36 H 1.08994 * 109.47559 * 119.99704 * 2 1 3 37 37 H 1.08998 * 109.47305 * 60.00620 * 3 2 1 38 38 H 1.08994 * 109.47319 * 299.99888 * 3 2 1 39 39 H 1.08998 * 109.47127 * 60.00608 * 4 3 2 40 40 H 1.08994 * 109.47189 * 300.00024 * 4 3 2 41 41 H 1.09003 * 109.46946 * 55.00899 * 7 5 4 42 42 H 1.08993 * 109.47679 * 295.00442 * 7 5 4 43 43 H 0.97000 * 119.99792 * 0.02562 * 8 7 5 44 44 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 45 45 H 0.96996 * 119.99542 * 264.99808 * 17 5 4 46 46 H 1.09004 * 109.99172 * 120.69386 * 23 22 20 47 47 H 1.09001 * 109.99216 * 242.01054 * 23 22 20 48 48 H 1.09004 * 109.07068 * 55.51272 * 26 24 23 49 49 H 1.08994 * 109.07650 * 174.47316 * 26 24 23 50 50 H 1.08998 * 109.64102 * 184.60111 * 28 27 26 51 51 H 1.09001 * 109.64362 * 305.23955 * 28 27 26 52 52 H 1.08990 * 109.30495 * 60.38282 * 29 28 27 53 53 H 1.09005 * 109.30663 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8851 0.0000 6 1 3.6449 3.4246 0.8414 7 6 5.6046 2.8870 0.1264 8 7 6.1029 4.2595 0.0061 9 6 7.4467 4.5096 0.0877 10 1 8.1393 3.6952 0.2404 11 6 7.9192 5.8094 -0.0321 12 7 7.0752 6.8019 -0.2187 13 14 9.7531 6.1497 0.0715 14 1 10.4553 5.4117 -1.0089 15 1 9.9957 7.6063 -0.0847 16 1 10.2659 5.7017 1.3912 17 7 3.6927 3.5394 -1.2523 18 6 2.4755 4.1062 -1.3682 19 8 1.7004 4.0743 -0.4360 20 6 2.0775 4.7798 -2.6563 21 1 2.8029 5.5485 -2.9223 22 8 0.7613 5.3502 -2.5388 23 6 0.0720 5.2378 -3.7954 24 6 1.0225 4.5122 -4.7608 25 1 1.6067 5.2426 -5.3205 26 6 0.2847 3.6051 -5.7201 27 8 -0.3573 2.5306 -5.0346 28 6 0.5650 1.6989 -4.3218 29 6 1.2053 2.5292 -3.2110 30 6 1.9519 3.7308 -3.8021 31 1 2.9097 3.4705 -4.2526 32 1 -0.3635 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8933 -0.5137 0.8899 37 1 1.6766 1.9564 0.8900 38 1 1.6765 1.9564 -0.8899 39 1 3.9336 0.9287 -0.8891 40 1 3.9328 0.9289 0.8908 41 1 6.0356 2.2735 -0.6648 42 1 5.8893 2.4810 1.0970 43 1 5.4808 4.9910 -0.1314 44 1 7.4054 7.7102 -0.3020 45 1 4.3126 3.5647 -1.9980 46 1 -0.8429 4.6591 -3.6681 47 1 -0.1646 6.2296 -4.1807 48 1 -0.4670 4.1869 -6.2537 49 1 0.9935 3.1957 -6.4397 50 1 0.0340 0.8522 -3.8867 51 1 1.3370 1.3405 -5.0028 52 1 0.4290 2.8836 -2.5329 53 1 1.9107 1.9088 -2.6582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717531980.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:10 Heat of formation + Delta-G solvation = -152.070343 kcal Electronic energy + Delta-G solvation = -32571.955251 eV Core-core repulsion = 28442.398727 eV Total energy + Delta-G solvation = -4129.556524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.21887 -40.47879 -38.62589 -37.65995 -36.26704 -35.12814 -34.22417 -33.11936 -32.73158 -31.76814 -29.76985 -28.61507 -26.45689 -25.89541 -24.79505 -24.13513 -23.74840 -21.91864 -21.78931 -21.15898 -20.59060 -19.22411 -18.27196 -17.84800 -17.62439 -17.24556 -16.79223 -16.58768 -16.29141 -16.20408 -16.14885 -15.67621 -15.36222 -15.12726 -14.99766 -14.46292 -14.39661 -14.16751 -14.11816 -13.83671 -13.58346 -13.52004 -13.29149 -13.14015 -13.10682 -12.85113 -12.75755 -12.63237 -12.49171 -12.17316 -12.08724 -12.00900 -11.84610 -11.82235 -11.68408 -11.40078 -11.25583 -11.20033 -10.97129 -10.89633 -10.49207 -10.41212 -9.91136 -9.00579 -7.93504 -5.23177 1.48806 1.51352 1.57419 1.61477 2.00568 2.56649 2.90225 2.98135 3.16371 3.40554 3.51548 3.62528 3.66508 3.93586 3.94692 4.02295 4.05861 4.10177 4.22033 4.26700 4.28782 4.32518 4.36554 4.38725 4.50543 4.57259 4.60040 4.63707 4.65920 4.71108 4.76792 4.84122 4.86737 4.92962 4.96247 4.99563 5.00471 5.09180 5.11427 5.16071 5.23743 5.26081 5.35531 5.43832 5.51366 5.62014 5.66430 5.83374 6.21164 6.26706 6.61893 7.30970 7.34309 8.08122 8.31660 9.29252 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.003610 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.534508 B = 7754.109144 C = 9381.614810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.119 4.119 4 C -0.116 4.116 5 C 0.149 3.851 6 H 0.051 0.949 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.245 4.245 10 H 0.080 0.920 11 C -0.072 4.072 12 N -0.969 5.969 13 Si 0.972 3.028 14 H -0.273 1.273 15 H -0.299 1.299 16 H -0.282 1.282 17 N -0.699 5.699 18 C 0.518 3.482 19 O -0.561 6.561 20 C 0.059 3.941 21 H 0.098 0.902 22 O -0.386 6.386 23 C 0.051 3.949 24 C -0.147 4.147 25 H 0.115 0.885 26 C 0.070 3.930 27 O -0.395 6.395 28 C 0.064 3.936 29 C -0.152 4.152 30 C -0.097 4.097 31 H 0.134 0.866 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.034 0.966 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.409 0.591 46 H 0.068 0.932 47 H 0.086 0.914 48 H 0.111 0.889 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.076 0.924 52 H 0.052 0.948 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.346 -13.657 -13.574 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.156 4.156 4 C -0.154 4.154 5 C 0.045 3.955 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.386 5.386 9 C -0.377 4.377 10 H 0.097 0.903 11 C -0.264 4.264 12 N -0.619 5.619 13 Si 0.801 3.199 14 H -0.199 1.199 15 H -0.226 1.226 16 H -0.208 1.208 17 N -0.352 5.352 18 C 0.304 3.696 19 O -0.440 6.440 20 C -0.002 4.002 21 H 0.116 0.884 22 O -0.305 6.305 23 C -0.025 4.025 24 C -0.165 4.165 25 H 0.133 0.867 26 C -0.006 4.006 27 O -0.313 6.313 28 C -0.012 4.012 29 C -0.190 4.190 30 C -0.116 4.116 31 H 0.152 0.848 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.205 0.795 44 H 0.058 0.942 45 H 0.245 0.755 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.129 0.871 49 H 0.095 0.905 50 H 0.118 0.882 51 H 0.094 0.906 52 H 0.071 0.929 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.023 -13.668 -12.688 23.333 hybrid contribution 1.335 1.325 0.274 1.901 sum -12.687 -12.343 -12.414 21.620 Atomic orbital electron populations 1.21732 0.96079 1.01751 1.01071 1.21521 0.95738 0.95910 1.02426 1.21775 0.94844 0.96895 1.02107 1.21905 0.95890 0.93997 1.03653 1.21100 0.94095 0.94125 0.86229 0.93070 1.21113 0.90794 0.86859 0.99264 1.42529 1.04474 1.03827 1.87800 1.19603 0.85009 0.92740 1.40299 0.90258 1.25533 1.01725 0.95688 1.03497 1.69826 1.34748 0.99095 1.58249 0.85234 0.80377 0.76119 0.78129 1.19927 1.22592 1.20794 1.45767 1.15521 1.57036 1.16862 1.20536 0.81786 0.77927 0.89358 1.90688 1.52374 1.59426 1.41486 1.23200 0.87274 0.96429 0.93271 0.88433 1.88669 1.26585 1.80673 1.34536 1.23297 0.95635 1.00940 0.82631 1.22785 0.97137 0.99007 0.97604 0.86682 1.22116 0.98131 0.87802 0.92586 1.88091 1.34392 1.41394 1.67467 1.22632 0.93235 0.92607 0.92731 1.22290 1.00276 0.97140 0.99286 1.23067 1.01007 0.94173 0.93309 0.84791 0.93466 0.91396 0.94138 0.90891 0.91839 0.94824 0.91351 0.89757 0.90197 0.93717 0.94811 0.79472 0.94162 0.75541 0.91392 0.89589 0.87106 0.90457 0.88224 0.90630 0.92942 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.91 71.98 0.71 -2.28 16 2 C -0.12 -2.39 5.93 30.59 0.18 -2.21 16 3 C -0.12 -3.13 3.82 30.60 0.12 -3.01 16 4 C -0.12 -2.88 4.89 30.60 0.15 -2.73 16 5 C 0.15 4.85 2.41 44.99 0.11 4.96 16 6 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 7 C 0.15 5.38 5.82 86.38 0.50 5.88 16 8 N -0.74 -36.07 5.43 -343.44 -1.87 -37.94 16 9 C -0.24 -13.13 9.99 84.04 0.84 -12.29 16 10 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 12 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 13 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 N -0.70 -21.25 4.47 -442.52 -1.98 -23.23 16 18 C 0.52 17.24 4.31 87.66 0.38 17.62 16 19 O -0.56 -23.13 13.69 15.37 0.21 -22.92 16 20 C 0.06 1.64 3.52 30.84 0.11 1.75 16 21 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 22 O -0.39 -12.24 10.20 -130.58 -1.33 -13.57 16 23 C 0.05 1.12 6.78 72.21 0.49 1.61 16 24 C -0.15 -2.28 2.97 -10.55 -0.03 -2.32 16 25 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 26 C 0.07 0.89 6.12 71.41 0.44 1.33 16 27 O -0.39 -7.12 10.46 -148.98 -1.56 -8.68 16 28 C 0.06 1.00 6.82 71.90 0.49 1.49 16 29 C -0.15 -3.05 3.36 30.62 0.10 -2.95 16 30 C -0.10 -1.80 3.67 -9.11 -0.03 -1.83 16 31 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.03 1.09 7.85 -2.39 -0.02 1.07 16 38 H 0.07 1.91 2.81 -2.39 -0.01 1.90 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.37 19.89 7.33 -92.71 -0.68 19.21 16 44 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 45 H 0.41 11.27 8.60 -92.71 -0.80 10.48 16 46 H 0.07 1.59 7.62 -2.38 -0.02 1.57 16 47 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 49 H 0.08 0.69 8.13 -2.39 -0.02 0.67 16 50 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 52 H 0.05 1.45 6.85 -2.39 -0.02 1.43 16 53 H 0.08 1.64 6.12 -2.38 -0.01 1.63 16 Total: -1.00 -72.76 403.31 0.23 -72.52 By element: Atomic # 1 Polarization: 44.13 SS G_CDS: -0.57 Total: 43.56 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 5.02 Total: 1.45 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -3.56 Total: -119.43 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -2.68 Total: -45.17 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.76 0.23 -72.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717531980.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.546 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds