Wall clock time and date at job start Sat Apr 11 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 C 1.50707 * 109.47175 * 120.00205 * 2 1 3 5 5 O 1.21279 * 119.99610 * 120.00027 * 4 2 1 6 6 N 1.34769 * 119.99655 * 299.72617 * 4 2 1 7 7 C 1.46505 * 119.99905 * 180.27849 * 6 4 2 8 8 C 1.52999 * 109.47171 * 179.97438 * 7 6 4 9 9 H 1.09005 * 109.51277 * 59.99812 * 8 7 6 10 10 C 1.53292 * 109.51063 * 180.09712 * 8 7 6 11 11 N 1.47172 * 108.37770 * 172.17500 * 10 8 7 12 12 C 1.36933 * 120.94548 * 129.50143 * 11 10 8 13 13 H 1.08006 * 119.99772 * 333.79381 * 12 11 10 14 14 C 1.38811 * 120.00160 * 153.79380 * 12 11 10 15 15 N 1.31615 * 120.00164 * 160.00548 * 14 12 11 16 16 Si 1.86802 * 119.99905 * 340.00168 * 14 12 11 17 17 H 1.48507 * 109.46788 * 91.88314 * 16 14 12 18 18 H 1.48500 * 109.47279 * 211.87950 * 16 14 12 19 19 H 1.48496 * 109.47216 * 331.88461 * 16 14 12 20 20 C 1.47156 * 118.07191 * 309.54836 * 11 10 8 21 21 C 1.53293 * 108.38273 * 50.50014 * 20 11 10 22 22 O 1.42960 * 109.22762 * 307.69468 * 21 20 11 23 23 C 1.53004 * 109.47161 * 240.00068 * 2 1 3 24 24 C 1.53175 * 109.54173 * 179.55581 * 23 2 1 25 25 C 1.53098 * 109.15883 * 183.15625 * 24 23 2 26 26 O 1.42898 * 109.41607 * 57.60773 * 25 24 23 27 27 C 1.42899 * 114.09981 * 298.83805 * 26 25 24 28 28 C 1.53096 * 109.41156 * 61.16162 * 27 26 25 29 29 H 1.09001 * 109.47361 * 299.99669 * 1 2 3 30 30 H 1.09005 * 109.47249 * 59.99913 * 1 2 3 31 31 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47276 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47205 * 300.00583 * 3 2 1 34 34 H 1.09001 * 109.46660 * 59.99902 * 3 2 1 35 35 H 0.97001 * 120.00726 * 0.27253 * 6 4 2 36 36 H 1.09006 * 109.46634 * 299.99616 * 7 6 4 37 37 H 1.08994 * 109.47412 * 59.99211 * 7 6 4 38 38 H 1.09001 * 109.68301 * 291.95073 * 10 8 7 39 39 H 1.09009 * 109.68353 * 52.50232 * 10 8 7 40 40 H 0.96996 * 120.00586 * 179.97438 * 15 14 12 41 41 H 1.08999 * 109.68045 * 290.77567 * 20 11 10 42 42 H 1.09002 * 109.70794 * 170.24111 * 20 11 10 43 43 H 1.09004 * 109.51092 * 187.77128 * 21 20 11 44 44 H 1.09002 * 109.55689 * 67.65064 * 21 20 11 45 45 H 1.09003 * 109.54345 * 299.82475 * 23 2 1 46 46 H 1.08997 * 109.52241 * 303.05793 * 24 23 2 47 47 H 1.08997 * 109.52499 * 63.24702 * 24 23 2 48 48 H 1.09003 * 109.47714 * 297.61950 * 25 24 23 49 49 H 1.09008 * 109.48588 * 177.59852 * 25 24 23 50 50 H 1.08994 * 109.48193 * 301.18039 * 27 26 25 51 51 H 1.08995 * 109.48952 * 181.14663 * 27 26 25 52 52 H 1.09005 * 109.52170 * 182.48650 * 28 27 26 53 53 H 1.09003 * 109.52424 * 62.29778 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7113 -0.2468 2.4545 7 6 2.2047 -0.9339 3.6507 8 6 1.6997 -0.2091 4.8999 9 1 0.6097 -0.2088 4.9051 10 6 2.2175 -0.9259 6.1521 11 7 1.8792 -0.1082 7.3281 12 6 1.2501 -0.6599 8.4120 13 1 0.6289 -1.5348 8.2883 14 6 1.4108 -0.0949 9.6697 15 7 0.5379 -0.3486 10.6215 16 14 2.8660 1.0253 10.0113 17 1 2.4793 2.4342 9.7449 18 1 3.2762 0.8848 11.4316 19 1 3.9992 0.6478 9.1291 20 6 2.2357 1.3193 7.3046 21 6 1.7160 1.9260 5.9963 22 8 2.1776 1.1383 4.8961 23 6 2.0400 -0.7213 -1.2493 24 6 3.5717 -0.7125 -1.2565 25 6 4.0718 -1.3660 -2.5475 26 8 3.5364 -0.6662 -3.6725 27 6 2.1093 -0.6814 -3.7439 28 6 1.5303 -0.0004 -2.5010 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.1537 0.5418 2.5436 36 1 1.8418 -1.9618 3.6549 37 1 3.2946 -0.9335 3.6464 38 1 1.7453 -1.9047 6.2365 39 1 3.2992 -1.0440 6.0868 40 1 0.6503 0.0459 11.5005 41 1 3.3191 1.4280 7.3549 42 1 1.7761 1.8269 8.1527 43 1 2.0875 2.9457 5.8950 44 1 0.6261 1.9348 6.0058 45 1 1.6799 -1.7501 -1.2489 46 1 3.9303 0.3155 -1.2061 47 1 3.9433 -1.2714 -0.3977 48 1 3.7469 -2.4060 -2.5780 49 1 5.1607 -1.3244 -2.5780 50 1 1.7586 -1.7124 -3.7901 51 1 1.7841 -0.1465 -4.6362 52 1 0.4418 -0.0501 -2.5322 53 1 1.8477 1.0421 -2.4757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732381008.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:44 Heat of formation + Delta-G solvation = -134.346325 kcal Electronic energy + Delta-G solvation = -31402.156119 eV Core-core repulsion = 27273.368167 eV Total energy + Delta-G solvation = -4128.787952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.78972 -40.44921 -39.71413 -37.07751 -36.64307 -35.84046 -33.70895 -33.13610 -32.08345 -31.90597 -29.38242 -28.33456 -27.50213 -26.18913 -24.87312 -24.71214 -23.97916 -23.01717 -21.87790 -21.19853 -19.86234 -18.98586 -18.00532 -17.62151 -17.43084 -17.27787 -16.90157 -16.86483 -16.25920 -16.01724 -15.86763 -15.79348 -15.53426 -15.36743 -15.21943 -14.87012 -14.72711 -14.38377 -14.19332 -14.03364 -13.66719 -13.54427 -13.39688 -13.19924 -13.06424 -12.95229 -12.78815 -12.61215 -12.40960 -12.35370 -12.21473 -12.09874 -11.84978 -11.67567 -11.59900 -11.55074 -11.40985 -11.17963 -11.05309 -10.61800 -10.51665 -10.32410 -10.03867 -9.01310 -8.21895 -5.56061 1.24635 1.39068 1.47074 1.66747 2.14413 2.35698 2.66613 2.97979 3.00756 3.18436 3.52518 3.64631 3.73890 3.88542 3.96689 4.08690 4.12535 4.14667 4.16422 4.23747 4.25157 4.32073 4.33215 4.40811 4.47188 4.54315 4.63827 4.65966 4.70358 4.75667 4.76975 4.80702 4.85526 4.87961 4.89528 4.91075 4.91714 5.02653 5.09584 5.10561 5.13922 5.22833 5.25705 5.38606 5.48471 5.53386 5.74714 6.05337 6.16005 6.30362 6.57052 6.78618 7.27121 7.50861 7.90938 8.97318 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029756 B = 0.002182 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.773542 B =12828.198134 C =12892.447847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 C -0.143 4.143 4 C 0.517 3.483 5 O -0.576 6.576 6 N -0.711 5.711 7 C 0.140 3.860 8 C 0.078 3.922 9 H 0.068 0.932 10 C 0.118 3.882 11 N -0.623 5.623 12 C -0.252 4.252 13 H 0.058 0.942 14 C -0.033 4.033 15 N -0.953 5.953 16 Si 0.947 3.053 17 H -0.266 1.266 18 H -0.311 1.311 19 H -0.269 1.269 20 C 0.080 3.920 21 C 0.059 3.941 22 O -0.381 6.381 23 C -0.060 4.060 24 C -0.159 4.159 25 C 0.063 3.937 26 O -0.403 6.403 27 C 0.054 3.946 28 C -0.148 4.148 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.412 0.588 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.263 0.737 41 H 0.034 0.966 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.047 0.953 49 H 0.095 0.905 50 H 0.050 0.950 51 H 0.110 0.890 52 H 0.096 0.904 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 5.345 -29.048 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.200 4.200 4 C 0.305 3.695 5 O -0.455 6.455 6 N -0.363 5.363 7 C 0.016 3.984 8 C 0.019 3.981 9 H 0.086 0.914 10 C -0.007 4.007 11 N -0.348 5.348 12 C -0.381 4.381 13 H 0.076 0.924 14 C -0.228 4.228 15 N -0.599 5.599 16 Si 0.776 3.224 17 H -0.193 1.193 18 H -0.239 1.239 19 H -0.194 1.194 20 C -0.045 4.045 21 C -0.019 4.019 22 O -0.300 6.300 23 C -0.079 4.079 24 C -0.197 4.197 25 C -0.013 4.013 26 O -0.323 6.323 27 C -0.023 4.023 28 C -0.185 4.185 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.140 0.860 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.065 0.935 49 H 0.114 0.886 50 H 0.068 0.932 51 H 0.128 0.872 52 H 0.114 0.886 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.038 4.817 -29.224 29.636 hybrid contribution 0.176 0.075 1.776 1.786 sum 1.215 4.892 -27.448 27.907 Atomic orbital electron populations 1.21952 0.90826 1.02801 1.04375 1.20774 0.98259 0.96842 0.91223 1.21997 1.01283 0.92684 1.04082 1.21135 0.79217 0.83947 0.85212 1.90618 1.39530 1.28306 1.87087 1.45851 1.53372 1.32200 1.04845 1.21165 0.99500 0.95688 0.82087 1.22638 0.98168 0.83292 0.94021 0.91418 1.21655 0.98251 0.94870 0.85964 1.44476 1.69724 1.04531 1.16090 1.18854 1.20891 1.12490 0.85895 0.92440 1.25862 1.00243 1.01287 0.95402 1.69938 1.36327 1.49019 1.04584 0.85948 0.81627 0.79377 0.75482 1.19261 1.23942 1.19365 1.22152 0.98119 0.85178 0.99071 1.23021 0.98841 0.95032 0.84966 1.87828 1.73732 1.22108 1.46350 1.20920 0.94948 0.98866 0.93149 1.22445 0.96396 1.01981 0.98862 1.22575 0.99076 0.94654 0.85042 1.87884 1.21797 1.76149 1.46444 1.22765 0.80093 1.00435 0.98974 1.22375 1.02137 1.00713 0.93275 0.91255 0.88881 0.92705 0.92923 0.89178 0.91315 0.75141 0.89776 0.91789 0.90920 0.94595 0.92767 0.94766 0.91675 0.85995 0.92618 0.92039 0.91317 0.90665 0.93491 0.88649 0.93165 0.87236 0.88578 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.02 71.98 0.58 -1.03 16 2 C -0.07 -1.05 0.43 -52.92 -0.02 -1.07 16 3 C -0.14 -1.85 7.67 71.98 0.55 -1.30 16 4 C 0.52 11.85 6.20 87.66 0.54 12.39 16 5 O -0.58 -17.38 13.70 -3.03 -0.04 -17.43 16 6 N -0.71 -15.48 5.23 -463.06 -2.42 -17.90 16 7 C 0.14 3.64 5.37 86.38 0.46 4.10 16 8 C 0.08 2.32 2.86 30.69 0.09 2.41 16 9 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 10 C 0.12 4.42 6.02 86.35 0.52 4.95 16 11 N -0.62 -28.54 2.84 -697.47 -1.98 -30.52 16 12 C -0.25 -13.97 10.10 84.03 0.85 -13.12 16 13 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 14 C -0.03 -1.88 5.26 84.86 0.45 -1.43 16 15 N -0.95 -58.68 13.97 21.65 0.30 -58.37 16 16 Si 0.95 45.64 24.29 68.60 1.67 47.31 16 17 H -0.27 -11.79 6.58 99.48 0.65 -11.13 16 18 H -0.31 -15.31 7.11 99.48 0.71 -14.61 16 19 H -0.27 -12.71 6.55 99.48 0.65 -12.06 16 20 C 0.08 3.22 4.38 86.35 0.38 3.60 16 21 C 0.06 1.82 6.98 72.08 0.50 2.32 16 22 O -0.38 -11.45 10.14 -148.98 -1.51 -12.96 16 23 C -0.06 -0.98 1.27 -10.67 -0.01 -0.99 16 24 C -0.16 -3.11 4.78 30.69 0.15 -2.97 16 25 C 0.06 1.16 6.84 72.01 0.49 1.65 16 26 O -0.40 -7.63 10.76 -148.98 -1.60 -9.24 16 27 C 0.05 0.69 6.84 72.01 0.49 1.19 16 28 C -0.15 -1.66 4.70 30.69 0.14 -1.51 16 29 H 0.07 0.71 7.57 -2.39 -0.02 0.69 16 30 H 0.09 0.65 6.51 -2.38 -0.02 0.64 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.05 0.83 6.36 -2.39 -0.02 0.82 16 33 H 0.09 0.82 6.37 -2.39 -0.02 0.81 16 34 H 0.07 0.82 7.55 -2.39 -0.02 0.80 16 35 H 0.41 7.44 7.19 -92.71 -0.67 6.78 16 36 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 39 H 0.04 1.34 8.14 -2.38 -0.02 1.33 16 40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.03 1.40 6.87 -2.39 -0.02 1.38 16 42 H 0.07 2.85 4.61 -2.39 -0.01 2.84 16 43 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 46 H 0.07 1.31 6.27 -2.39 -0.01 1.29 16 47 H 0.07 1.88 5.65 -2.39 -0.01 1.87 16 48 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.10 1.59 8.14 -2.38 -0.02 1.58 16 50 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.10 0.70 6.62 -2.38 -0.02 0.69 16 53 H 0.08 0.87 6.29 -2.39 -0.01 0.85 16 Total: -1.00 -70.54 388.72 0.70 -69.83 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.13 Total: 20.11 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 6.16 Total: 9.16 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -4.10 Total: -106.80 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -3.16 Total: -39.62 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.67 Total: 47.31 kcal Total: -70.54 0.70 -69.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732381008.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.515 kcal (2) G-P(sol) polarization free energy of solvation -70.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds