Wall clock time and date at job start Sat Apr 11 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46549 * 2 1 4 4 N 1.46494 * 109.45154 * 295.29385 * 3 2 1 5 5 C 1.36934 * 120.00389 * 295.96259 * 4 3 2 6 6 H 1.08000 * 119.99858 * 5.42239 * 5 4 3 7 7 C 1.38811 * 120.00361 * 185.41776 * 5 4 3 8 8 N 1.31618 * 119.99559 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46925 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47099 * 119.99715 * 9 7 5 12 12 H 1.48497 * 109.47470 * 240.00515 * 9 7 5 13 13 C 1.53049 * 109.45798 * 175.32901 * 3 2 1 14 14 C 1.53190 * 109.31052 * 178.61233 * 13 3 2 15 15 N 1.46920 * 108.77545 * 54.64100 * 14 13 3 16 16 C 1.34774 * 120.63480 * 126.40964 * 15 14 13 17 17 O 1.21280 * 120.00077 * 356.11554 * 16 15 14 18 18 C 1.50703 * 120.00454 * 176.11726 * 16 15 14 19 19 H 1.09000 * 109.46480 * 340.33584 * 18 16 15 20 20 O 1.42900 * 109.47029 * 220.33790 * 18 16 15 21 21 C 1.42901 * 113.99877 * 149.99833 * 20 18 16 22 22 C 1.52996 * 109.47060 * 100.33909 * 18 16 15 23 23 H 1.08999 * 110.75699 * 68.99695 * 22 18 16 24 24 C 1.55314 * 110.84604 * 192.47355 * 22 18 16 25 25 C 1.55199 * 100.82724 * 152.17509 * 24 22 18 26 26 O 1.43639 * 105.26397 * 323.81733 * 25 24 22 27 27 C 1.43241 * 109.97361 * 24.27973 * 26 25 24 28 28 C 1.46932 * 118.73937 * 306.38679 * 15 14 13 29 29 C 1.53046 * 109.46276 * 55.26583 * 3 2 1 30 30 H 1.08993 * 109.47147 * 60.33342 * 1 2 3 31 31 H 1.09004 * 109.46636 * 180.32649 * 1 2 3 32 32 H 1.08992 * 109.47480 * 300.32303 * 1 2 3 33 33 H 1.08996 * 109.47076 * 239.99965 * 2 1 3 34 34 H 1.09001 * 109.47323 * 119.99813 * 2 1 3 35 35 H 0.97009 * 119.99964 * 115.96032 * 4 3 2 36 36 H 0.97004 * 119.99611 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.49027 * 58.66371 * 13 3 2 38 38 H 1.08994 * 109.49727 * 298.56725 * 13 3 2 39 39 H 1.09003 * 109.58454 * 174.42509 * 14 13 3 40 40 H 1.08996 * 109.58837 * 294.70840 * 14 13 3 41 41 H 1.08997 * 109.46909 * 59.99750 * 21 20 18 42 42 H 1.08996 * 109.47306 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.47021 * 299.99763 * 21 20 18 44 44 H 1.09007 * 111.11819 * 270.24277 * 24 22 18 45 45 H 1.08999 * 111.12509 * 34.39738 * 24 22 18 46 46 H 1.09001 * 110.37037 * 204.78999 * 25 24 22 47 47 H 1.09009 * 110.21179 * 82.75064 * 25 24 22 48 48 H 1.08992 * 109.83341 * 238.78244 * 27 26 25 49 49 H 1.08997 * 109.82741 * 117.80227 * 27 26 25 50 50 H 1.09003 * 109.58812 * 173.39480 * 28 15 14 51 51 H 1.08999 * 109.58060 * 293.82330 * 28 15 14 52 52 H 1.08995 * 109.49577 * 61.42766 * 29 3 2 53 53 H 1.08998 * 109.49322 * 301.33361 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.6460 2.0992 -1.2489 5 6 2.1380 1.6480 -2.4445 6 1 2.7456 0.7557 -2.4762 7 6 1.8556 2.3373 -3.6158 8 7 1.1154 3.4249 -3.5771 9 14 2.5274 1.7221 -5.2467 10 1 3.3244 0.4896 -5.0205 11 1 1.3996 1.4201 -6.1642 12 1 3.3918 2.7670 -5.8518 13 6 3.5659 1.4439 0.1175 14 6 4.0753 2.8882 0.0823 15 7 3.3889 3.6574 1.1291 16 6 4.0931 4.3569 2.0408 17 8 5.3046 4.2992 2.0458 18 6 3.3754 5.2108 3.0541 19 1 2.3660 5.4222 2.7011 20 8 4.0852 6.4384 3.2307 21 6 3.2528 7.5458 3.5813 22 6 3.3037 4.4666 4.3889 23 1 4.2931 4.3838 4.8387 24 6 2.3122 5.1655 5.3588 25 6 1.8559 3.9622 6.2264 26 8 1.7960 2.8464 5.3238 27 6 2.6643 3.0731 4.2073 28 6 1.9200 3.6501 1.1628 29 6 1.4346 2.1973 1.1859 30 1 -0.3633 0.5086 -0.8929 31 1 -0.3633 -1.0277 0.0059 32 1 -0.3634 0.5188 0.8870 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.0366 2.8537 -1.2289 36 1 0.9178 3.9064 -4.3957 37 1 3.9952 0.8863 -0.7148 38 1 3.8587 0.9776 1.0581 39 1 5.1499 2.9011 0.2646 40 1 3.8650 3.3262 -0.8933 41 1 2.7405 7.3325 4.5195 42 1 3.8663 8.4393 3.6968 43 1 2.5166 7.7103 2.7945 44 1 2.8183 5.9193 5.9619 45 1 1.4715 5.5984 4.8166 46 1 0.8727 4.1550 6.6555 47 1 2.5820 3.7709 7.0166 48 1 2.0902 3.0475 3.2812 49 1 3.4421 2.3099 4.1829 50 1 1.5725 4.1657 2.0581 51 1 1.5317 4.1511 0.2761 52 1 1.7476 1.7239 2.1164 53 1 0.3472 2.1759 1.1139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733804601.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:02 Heat of formation + Delta-G solvation = -100.475733 kcal Electronic energy + Delta-G solvation = -33227.453988 eV Core-core repulsion = 29100.134775 eV Total energy + Delta-G solvation = -4127.319213 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90054 -39.27339 -38.30732 -37.31510 -34.85129 -33.03152 -32.67311 -31.27181 -30.13377 -29.91943 -29.12900 -27.70023 -25.86972 -24.64624 -23.86650 -22.96867 -22.85326 -21.78319 -20.95429 -19.32400 -18.32285 -17.74219 -17.06885 -16.94003 -16.63335 -16.14351 -15.50800 -15.15879 -14.97345 -14.76119 -14.46863 -14.37278 -14.12467 -13.98927 -13.84288 -13.41835 -13.37161 -13.15890 -12.80132 -12.58010 -12.38412 -12.21778 -11.90941 -11.89111 -11.73207 -11.59184 -11.29574 -11.27106 -11.23068 -10.99793 -10.91380 -10.77287 -10.61165 -10.35761 -10.22177 -10.07365 -10.00843 -9.68964 -9.64482 -9.48074 -9.26688 -8.93404 -8.24025 -6.96387 -5.80342 -3.08090 2.60250 2.96410 3.41036 3.47959 3.49471 3.61274 3.77651 4.09013 4.41497 4.53082 4.56352 4.61477 4.78091 4.88356 4.94085 5.03018 5.09638 5.13568 5.24158 5.28360 5.37008 5.37981 5.44995 5.49940 5.51026 5.54527 5.56119 5.64882 5.68236 5.79706 5.81347 5.92122 5.94446 6.02780 6.11497 6.15211 6.27093 6.39711 6.49231 6.58487 6.63159 6.73792 6.75086 6.83859 6.86606 6.94416 7.04671 7.09105 7.68022 7.71117 8.35583 8.38523 9.50527 10.06178 10.41917 11.42104 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003808 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.168165 B = 7350.427209 C = 8340.309296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.204 3.796 4 N -0.712 5.712 5 C -0.229 4.229 6 H 0.070 0.930 7 C -0.010 4.010 8 N -0.932 5.932 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.293 1.293 13 C -0.132 4.132 14 C 0.122 3.878 15 N -0.594 5.594 16 C 0.514 3.486 17 O -0.530 6.530 18 C 0.082 3.918 19 H 0.086 0.914 20 O -0.357 6.357 21 C 0.021 3.979 22 C -0.137 4.137 23 H 0.101 0.899 24 C -0.152 4.152 25 C 0.051 3.949 26 O -0.378 6.378 27 C 0.039 3.961 28 C 0.100 3.900 29 C -0.137 4.137 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.382 0.618 36 H 0.253 0.747 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.086 0.914 52 H 0.068 0.932 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 3.713 18.557 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.112 3.888 4 N -0.354 5.354 5 C -0.360 4.360 6 H 0.088 0.912 7 C -0.206 4.206 8 N -0.580 5.580 9 Si 0.731 3.269 10 H -0.206 1.206 11 H -0.221 1.221 12 H -0.220 1.220 13 C -0.173 4.173 14 C 0.001 3.999 15 N -0.328 5.328 16 C 0.300 3.700 17 O -0.407 6.407 18 C 0.021 3.979 19 H 0.104 0.896 20 O -0.275 6.275 21 C -0.076 4.076 22 C -0.157 4.157 23 H 0.120 0.880 24 C -0.190 4.190 25 C -0.025 4.025 26 O -0.298 6.298 27 C -0.037 4.037 28 C -0.022 4.022 29 C -0.175 4.175 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.217 0.783 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.079 0.921 48 H 0.109 0.891 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.104 0.896 52 H 0.086 0.914 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.269 3.446 18.403 18.724 hybrid contribution -0.047 0.183 -1.046 1.063 sum -0.316 3.629 17.356 17.735 Atomic orbital electron populations 1.21689 0.96382 0.99863 1.01990 1.21938 0.96043 0.98303 1.00335 1.19527 0.91373 0.91295 0.86572 1.42433 1.55260 1.37742 0.99983 1.19128 1.25621 1.06587 0.84659 0.91189 1.24666 1.00893 0.97459 0.97604 1.69650 1.42520 1.19019 1.26828 0.86236 0.78137 0.77803 0.84727 1.20643 1.22106 1.22043 1.22274 0.98530 0.95717 1.00735 1.21618 0.96281 0.91423 0.90580 1.48104 1.06923 1.48255 1.29470 1.20117 0.87789 0.80638 0.81491 1.90672 1.13731 1.64181 1.72073 1.22052 0.96186 0.86174 0.93500 0.89594 1.88040 1.33317 1.16009 1.90114 1.23040 0.95853 0.89314 0.99377 1.23193 1.01517 0.95348 0.95604 0.88044 1.23493 0.98866 0.98616 0.98003 1.23412 1.01588 0.84878 0.92643 1.88431 1.65459 1.41681 1.34182 1.23606 0.93852 0.95247 0.90975 1.21950 0.79573 0.98387 1.02332 1.22279 1.01456 0.94557 0.99217 0.91324 0.94589 0.93772 0.91797 0.94027 0.78301 0.93707 0.90543 0.93410 0.90508 0.89074 0.93402 0.89146 0.93583 0.89312 0.90090 0.89517 0.92125 0.89103 0.90963 0.90906 0.89577 0.91370 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.32 37.16 0.35 -1.91 16 2 C -0.13 -2.11 4.97 -26.73 -0.13 -2.24 16 3 C 0.20 3.51 0.44 -131.77 -0.06 3.45 16 4 N -0.71 -15.16 3.53 -47.19 -0.17 -15.33 16 5 C -0.23 -5.63 8.50 -15.06 -0.13 -5.76 16 6 H 0.07 1.72 6.69 -52.49 -0.35 1.37 16 7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 8 N -0.93 -26.13 13.06 55.49 0.72 -25.41 16 9 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C -0.13 -2.28 4.64 -26.61 -0.12 -2.40 16 14 C 0.12 2.21 6.18 -3.71 -0.02 2.19 16 15 N -0.59 -9.55 2.92 -172.77 -0.51 -10.06 16 16 C 0.51 8.52 5.99 -10.98 -0.07 8.46 16 17 O -0.53 -10.75 16.30 -10.07 -0.16 -10.91 16 18 C 0.08 1.06 1.82 -27.88 -0.05 1.01 16 19 H 0.09 0.96 5.29 -51.93 -0.27 0.68 16 20 O -0.36 -4.86 10.17 -50.85 -0.52 -5.38 16 21 C 0.02 0.19 10.67 101.05 1.08 1.26 16 22 C -0.14 -1.53 2.81 -88.67 -0.25 -1.78 16 23 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 24 C -0.15 -1.23 4.93 -24.34 -0.12 -1.35 16 25 C 0.05 0.44 7.78 38.32 0.30 0.74 16 26 O -0.38 -4.53 11.36 -35.23 -0.40 -4.93 16 27 C 0.04 0.47 6.56 37.88 0.25 0.72 16 28 C 0.10 1.42 4.87 -3.71 -0.02 1.40 16 29 C -0.14 -1.97 4.10 -26.61 -0.11 -2.07 16 30 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.63 6.30 -51.93 -0.33 0.30 16 33 H 0.06 1.19 7.25 -51.93 -0.38 0.81 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.38 8.80 6.61 -40.82 -0.27 8.53 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.08 1.41 7.21 -51.93 -0.37 1.04 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 40 H 0.09 1.92 7.62 -51.93 -0.40 1.52 16 41 H 0.05 0.33 5.45 -51.93 -0.28 0.05 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 44 H 0.09 0.59 7.48 -51.93 -0.39 0.20 16 45 H 0.08 0.58 7.69 -51.93 -0.40 0.18 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 48 H 0.09 1.09 2.33 -51.93 -0.12 0.97 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.84 4.22 -51.93 -0.22 0.62 16 51 H 0.09 1.39 7.02 -51.93 -0.36 1.03 16 52 H 0.07 0.92 6.59 -51.93 -0.34 0.57 16 53 H 0.08 1.13 6.26 -51.93 -0.33 0.81 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -30.41 387.64 -7.93 -38.34 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -8.52 Total: 9.98 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 0.80 Total: 1.35 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.05 Total: -50.79 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.08 Total: -21.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.41 -7.93 -38.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733804601.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.136 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds