Wall clock time and date at job start Sat Apr 11 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46549 * 2 1 4 4 N 1.46494 * 109.45154 * 295.29385 * 3 2 1 5 5 C 1.36934 * 120.00389 * 295.96259 * 4 3 2 6 6 H 1.08000 * 119.99858 * 5.42239 * 5 4 3 7 7 C 1.38811 * 120.00361 * 185.41776 * 5 4 3 8 8 N 1.31618 * 119.99559 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46925 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47099 * 119.99715 * 9 7 5 12 12 H 1.48497 * 109.47470 * 240.00515 * 9 7 5 13 13 C 1.53049 * 109.45798 * 175.32901 * 3 2 1 14 14 C 1.53190 * 109.31052 * 178.61233 * 13 3 2 15 15 N 1.46920 * 108.77545 * 54.64100 * 14 13 3 16 16 C 1.34774 * 120.63480 * 126.40964 * 15 14 13 17 17 O 1.21280 * 120.00077 * 356.11554 * 16 15 14 18 18 C 1.50703 * 120.00454 * 176.11726 * 16 15 14 19 19 H 1.09000 * 109.46480 * 340.33584 * 18 16 15 20 20 O 1.42900 * 109.47029 * 220.33790 * 18 16 15 21 21 C 1.42901 * 113.99877 * 149.99833 * 20 18 16 22 22 C 1.52996 * 109.47060 * 100.33909 * 18 16 15 23 23 H 1.08999 * 110.75699 * 68.99695 * 22 18 16 24 24 C 1.55314 * 110.84604 * 192.47355 * 22 18 16 25 25 C 1.55199 * 100.82724 * 152.17509 * 24 22 18 26 26 O 1.43639 * 105.26397 * 323.81733 * 25 24 22 27 27 C 1.43241 * 109.97361 * 24.27973 * 26 25 24 28 28 C 1.46932 * 118.73937 * 306.38679 * 15 14 13 29 29 C 1.53046 * 109.46276 * 55.26583 * 3 2 1 30 30 H 1.08993 * 109.47147 * 60.33342 * 1 2 3 31 31 H 1.09004 * 109.46636 * 180.32649 * 1 2 3 32 32 H 1.08992 * 109.47480 * 300.32303 * 1 2 3 33 33 H 1.08996 * 109.47076 * 239.99965 * 2 1 3 34 34 H 1.09001 * 109.47323 * 119.99813 * 2 1 3 35 35 H 0.97009 * 119.99964 * 115.96032 * 4 3 2 36 36 H 0.97004 * 119.99611 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.49027 * 58.66371 * 13 3 2 38 38 H 1.08994 * 109.49727 * 298.56725 * 13 3 2 39 39 H 1.09003 * 109.58454 * 174.42509 * 14 13 3 40 40 H 1.08996 * 109.58837 * 294.70840 * 14 13 3 41 41 H 1.08997 * 109.46909 * 59.99750 * 21 20 18 42 42 H 1.08996 * 109.47306 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.47021 * 299.99763 * 21 20 18 44 44 H 1.09007 * 111.11819 * 270.24277 * 24 22 18 45 45 H 1.08999 * 111.12509 * 34.39738 * 24 22 18 46 46 H 1.09001 * 110.37037 * 204.78999 * 25 24 22 47 47 H 1.09009 * 110.21179 * 82.75064 * 25 24 22 48 48 H 1.08992 * 109.83341 * 238.78244 * 27 26 25 49 49 H 1.08997 * 109.82741 * 117.80227 * 27 26 25 50 50 H 1.09003 * 109.58812 * 173.39480 * 28 15 14 51 51 H 1.08999 * 109.58060 * 293.82330 * 28 15 14 52 52 H 1.08995 * 109.49577 * 61.42766 * 29 3 2 53 53 H 1.08998 * 109.49322 * 301.33361 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.6460 2.0992 -1.2489 5 6 2.1380 1.6480 -2.4445 6 1 2.7456 0.7557 -2.4762 7 6 1.8556 2.3373 -3.6158 8 7 1.1154 3.4249 -3.5771 9 14 2.5274 1.7221 -5.2467 10 1 3.3244 0.4896 -5.0205 11 1 1.3996 1.4201 -6.1642 12 1 3.3918 2.7670 -5.8518 13 6 3.5659 1.4439 0.1175 14 6 4.0753 2.8882 0.0823 15 7 3.3889 3.6574 1.1291 16 6 4.0931 4.3569 2.0408 17 8 5.3046 4.2992 2.0458 18 6 3.3754 5.2108 3.0541 19 1 2.3660 5.4222 2.7011 20 8 4.0852 6.4384 3.2307 21 6 3.2528 7.5458 3.5813 22 6 3.3037 4.4666 4.3889 23 1 4.2931 4.3838 4.8387 24 6 2.3122 5.1655 5.3588 25 6 1.8559 3.9622 6.2264 26 8 1.7960 2.8464 5.3238 27 6 2.6643 3.0731 4.2073 28 6 1.9200 3.6501 1.1628 29 6 1.4346 2.1973 1.1859 30 1 -0.3633 0.5086 -0.8929 31 1 -0.3633 -1.0277 0.0059 32 1 -0.3634 0.5188 0.8870 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.0366 2.8537 -1.2289 36 1 0.9178 3.9064 -4.3957 37 1 3.9952 0.8863 -0.7148 38 1 3.8587 0.9776 1.0581 39 1 5.1499 2.9011 0.2646 40 1 3.8650 3.3262 -0.8933 41 1 2.7405 7.3325 4.5195 42 1 3.8663 8.4393 3.6968 43 1 2.5166 7.7103 2.7945 44 1 2.8183 5.9193 5.9619 45 1 1.4715 5.5984 4.8166 46 1 0.8727 4.1550 6.6555 47 1 2.5820 3.7709 7.0166 48 1 2.0902 3.0475 3.2812 49 1 3.4421 2.3099 4.1829 50 1 1.5725 4.1657 2.0581 51 1 1.5317 4.1511 0.2761 52 1 1.7476 1.7239 2.1164 53 1 0.3472 2.1759 1.1139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733804601.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:01 Heat of formation + Delta-G solvation = -120.165743 kcal Electronic energy + Delta-G solvation = -33228.307811 eV Core-core repulsion = 29100.134775 eV Total energy + Delta-G solvation = -4128.173036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.03911 -40.35357 -39.50699 -38.41366 -36.31203 -34.49394 -33.94796 -32.50071 -31.55906 -30.97275 -30.60800 -28.56570 -26.94358 -26.03392 -25.46294 -24.30395 -23.76942 -22.79445 -22.07388 -20.60791 -19.67373 -18.92631 -18.87395 -17.96027 -17.57283 -17.19592 -16.64952 -16.46371 -15.99709 -15.97247 -15.70362 -15.57122 -15.44070 -15.33183 -15.23409 -14.76012 -14.52496 -14.29278 -14.17873 -13.78626 -13.53947 -13.34484 -13.06981 -12.95473 -12.88112 -12.87067 -12.72073 -12.59268 -12.32380 -12.27476 -12.13715 -12.10551 -12.02595 -11.78852 -11.73553 -11.62242 -11.39260 -11.07757 -10.81740 -10.79323 -10.52878 -10.43493 -9.66616 -8.81989 -7.84352 -5.07319 1.35369 1.46766 1.50482 1.56162 1.76243 2.61764 2.78138 2.88029 3.16062 3.50518 3.52687 3.56849 3.71064 3.84609 3.88186 3.93766 4.06186 4.15372 4.17243 4.24376 4.27112 4.34991 4.45760 4.48146 4.52805 4.55526 4.57563 4.68239 4.71041 4.77265 4.79606 4.82303 4.84427 4.87824 4.89562 4.93109 5.05584 5.10766 5.15385 5.18448 5.30024 5.35042 5.38842 5.53673 5.63843 5.66367 5.74147 5.96763 6.00086 6.39299 6.39671 7.04416 7.47689 8.23800 8.47952 9.38962 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003808 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.168165 B = 7350.427209 C = 8340.309296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.197 3.803 4 N -0.713 5.713 5 C -0.203 4.203 6 H 0.069 0.931 7 C -0.069 4.069 8 N -0.964 5.964 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.301 1.301 12 H -0.304 1.304 13 C -0.125 4.125 14 C 0.130 3.870 15 N -0.592 5.592 16 C 0.508 3.492 17 O -0.575 6.575 18 C 0.091 3.909 19 H 0.107 0.893 20 O -0.388 6.388 21 C 0.012 3.988 22 C -0.135 4.135 23 H 0.086 0.914 24 C -0.143 4.143 25 C 0.045 3.955 26 O -0.395 6.395 27 C 0.043 3.957 28 C 0.102 3.898 29 C -0.129 4.129 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.374 0.626 36 H 0.244 0.756 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.052 0.948 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.057 0.943 50 H 0.109 0.891 51 H 0.066 0.934 52 H 0.087 0.913 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 3.751 21.531 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C 0.107 3.893 4 N -0.353 5.353 5 C -0.336 4.336 6 H 0.087 0.913 7 C -0.261 4.261 8 N -0.616 5.616 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.229 1.229 12 H -0.232 1.232 13 C -0.165 4.165 14 C 0.007 3.993 15 N -0.324 5.324 16 C 0.296 3.704 17 O -0.454 6.454 18 C 0.030 3.970 19 H 0.125 0.875 20 O -0.306 6.306 21 C -0.083 4.083 22 C -0.154 4.154 23 H 0.105 0.895 24 C -0.180 4.180 25 C -0.031 4.031 26 O -0.315 6.315 27 C -0.034 4.034 28 C -0.020 4.020 29 C -0.167 4.167 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.208 0.792 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.125 0.875 45 H 0.116 0.884 46 H 0.126 0.874 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.075 0.925 50 H 0.126 0.874 51 H 0.084 0.916 52 H 0.106 0.894 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.604 3.451 21.417 21.752 hybrid contribution 0.423 0.153 -1.861 1.915 sum -1.181 3.604 19.556 19.920 Atomic orbital electron populations 1.21619 0.95512 1.00723 1.01433 1.21882 0.96735 0.97280 1.00391 1.19788 0.91374 0.92070 0.86031 1.42508 1.54739 1.37515 1.00588 1.19338 1.23166 1.05368 0.85723 0.91276 1.25181 1.02592 0.98352 0.99992 1.69762 1.44800 1.20445 1.26581 0.85449 0.77214 0.77293 0.82136 1.19633 1.22851 1.23222 1.22197 0.98438 0.94852 1.01025 1.21300 0.96083 0.92158 0.89739 1.48127 1.07736 1.47817 1.28764 1.20931 0.87490 0.80305 0.81713 1.90644 1.15817 1.65542 1.73394 1.21997 0.96022 0.85846 0.93113 0.87548 1.88008 1.35181 1.16974 1.90481 1.23315 0.96010 0.88228 1.00789 1.23127 1.01747 0.95384 0.95178 0.89511 1.23522 0.98492 0.98664 0.97297 1.23650 1.03128 0.84042 0.92293 1.88414 1.65253 1.43300 1.34532 1.23489 0.93500 0.95202 0.91198 1.22041 0.78120 0.98699 1.03120 1.22235 1.01985 0.94126 0.98341 0.94518 0.93137 0.91557 0.94208 0.91494 0.79236 0.94676 0.92208 0.91479 0.91550 0.92603 0.90848 0.88104 0.92912 0.87503 0.88425 0.87351 0.91587 0.89219 0.92486 0.87371 0.91566 0.89431 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.32 71.98 0.67 -3.34 16 2 C -0.12 -3.88 4.97 30.60 0.15 -3.73 16 3 C 0.20 6.58 0.44 3.64 0.00 6.59 16 4 N -0.71 -30.55 3.53 -303.22 -1.07 -31.62 16 5 C -0.20 -10.17 8.50 84.03 0.71 -9.45 16 6 H 0.07 3.44 6.69 -2.91 -0.02 3.42 16 7 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 8 N -0.96 -55.59 13.06 21.65 0.28 -55.30 16 9 Si 0.95 45.36 29.55 68.60 2.03 47.38 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 13 C -0.13 -4.27 4.64 30.67 0.14 -4.13 16 14 C 0.13 4.81 6.18 86.36 0.53 5.35 16 15 N -0.59 -18.82 2.92 -818.91 -2.39 -21.22 16 16 C 0.51 16.65 5.99 87.66 0.53 17.17 16 17 O -0.57 -23.75 16.30 11.91 0.19 -23.56 16 18 C 0.09 2.18 1.82 29.85 0.05 2.23 16 19 H 0.11 2.02 5.29 -2.39 -0.01 2.01 16 20 O -0.39 -9.90 10.17 -134.04 -1.36 -11.26 16 21 C 0.01 0.18 10.67 113.37 1.21 1.39 16 22 C -0.13 -2.68 2.81 -9.53 -0.03 -2.71 16 23 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 24 C -0.14 -1.72 4.93 32.14 0.16 -1.57 16 25 C 0.04 0.60 7.78 72.74 0.57 1.17 16 26 O -0.40 -8.23 11.36 -148.98 -1.69 -9.92 16 27 C 0.04 0.91 6.56 72.45 0.48 1.38 16 28 C 0.10 2.72 4.87 86.36 0.42 3.14 16 29 C -0.13 -3.39 4.10 30.67 0.13 -3.26 16 30 H 0.04 1.32 7.75 -2.39 -0.02 1.30 16 31 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.07 1.66 6.30 -2.39 -0.02 1.64 16 33 H 0.04 1.44 7.25 -2.39 -0.02 1.42 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.37 17.41 6.61 -92.70 -0.61 16.80 16 36 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.06 2.23 7.21 -2.39 -0.02 2.21 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 39 H 0.07 2.58 7.00 -2.39 -0.02 2.56 16 40 H 0.06 2.47 7.62 -2.39 -0.02 2.45 16 41 H 0.07 0.72 5.45 -2.39 -0.01 0.70 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.05 0.73 8.09 -2.39 -0.02 0.71 16 44 H 0.11 0.95 7.48 -2.38 -0.02 0.93 16 45 H 0.10 0.90 7.69 -2.39 -0.02 0.88 16 46 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.09 1.88 2.33 -2.39 -0.01 1.87 16 49 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.11 2.13 4.22 -2.39 -0.01 2.12 16 51 H 0.07 2.09 7.02 -2.39 -0.02 2.08 16 52 H 0.09 2.03 6.59 -2.39 -0.02 2.02 16 53 H 0.09 2.30 6.26 -2.39 -0.01 2.29 16 Total: -1.00 -68.71 387.64 2.49 -66.21 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.31 Total: 32.32 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.19 Total: 6.96 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -3.18 Total: -108.14 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -2.86 Total: -44.74 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.71 2.49 -66.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733804601.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.952 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds