Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 117.00079 * 2 1 4 4 O 1.20823 * 119.99841 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99984 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.77871 * 57.98297 * 5 3 2 7 7 C 1.55157 * 110.71963 * 181.21401 * 5 3 2 8 8 C 1.54907 * 101.58084 * 153.86706 * 7 5 3 9 9 N 1.47426 * 104.83569 * 322.99160 * 8 7 5 10 10 C 1.34772 * 125.65293 * 204.15040 * 9 8 7 11 11 O 1.21590 * 119.99931 * 178.27799 * 10 9 8 12 12 N 1.34772 * 119.99833 * 358.27236 * 10 9 8 13 13 C 1.46505 * 120.00060 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47267 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47151 * 300.00374 * 14 13 12 16 16 C 1.53001 * 109.46657 * 60.00340 * 14 13 12 17 17 C 1.50693 * 109.46968 * 180.02562 * 14 13 12 18 18 H 1.08001 * 120.00424 * 0.02562 * 17 14 13 19 19 C 1.37880 * 119.99735 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00181 * 359.97438 * 19 17 14 21 21 Si 1.86809 * 119.99777 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47050 * 119.99996 * 21 19 17 24 24 H 1.48507 * 109.46823 * 239.99785 * 21 19 17 25 25 C 1.47022 * 108.69877 * 24.12890 * 9 8 7 26 26 H 1.08998 * 109.88319 * 118.35696 * 25 9 8 27 27 C 1.52999 * 109.88417 * 239.37051 * 25 9 8 28 28 C 1.53006 * 109.46715 * 291.23372 * 27 25 9 29 29 C 1.52997 * 109.47107 * 51.23210 * 27 25 9 30 30 H 1.09001 * 109.46780 * 299.99858 * 1 2 3 31 31 H 1.09000 * 109.47264 * 59.99671 * 1 2 3 32 32 H 1.08991 * 109.47216 * 179.97438 * 1 2 3 33 33 H 1.09005 * 111.00181 * 35.79572 * 7 5 3 34 34 H 1.08997 * 111.00704 * 271.94186 * 7 5 3 35 35 H 1.09004 * 110.36914 * 204.15146 * 8 7 5 36 36 H 1.09003 * 110.36643 * 81.83324 * 8 7 5 37 37 H 0.96999 * 120.00444 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47038 * 300.00410 * 13 12 10 39 39 H 1.09000 * 109.46935 * 60.00275 * 13 12 10 40 40 H 1.08999 * 109.47039 * 60.00177 * 15 14 13 41 41 H 1.09001 * 109.46604 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.46979 * 299.99854 * 15 14 13 43 43 H 1.08997 * 109.47367 * 60.00410 * 16 14 13 44 44 H 1.09005 * 109.46810 * 180.02562 * 16 14 13 45 45 H 1.09003 * 109.47329 * 299.99390 * 16 14 13 46 46 H 0.97003 * 120.00128 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.47525 * 171.23652 * 27 25 9 48 48 H 1.09005 * 109.46959 * 84.88071 * 28 27 25 49 49 H 1.08996 * 109.47296 * 204.87627 * 28 27 25 50 50 H 1.08994 * 109.47480 * 324.88112 * 28 27 25 51 51 H 1.09000 * 109.47006 * 60.00648 * 29 27 25 52 52 H 1.09001 * 109.46847 * 180.02562 * 29 27 25 53 53 H 1.09004 * 109.47403 * 299.99940 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9811 0.7554 -0.8632 7 6 4.0386 2.7525 0.0312 8 6 5.4315 2.6201 0.6960 9 7 5.2677 1.5604 1.7078 10 6 6.0235 1.4058 2.8128 11 8 5.7772 0.5101 3.5974 12 7 7.0524 2.2438 3.0482 13 6 7.8737 2.0761 4.2497 14 6 8.9640 3.1492 4.2761 15 6 9.8450 3.0119 3.0328 16 6 8.3153 4.5349 4.2911 17 6 9.8091 2.9763 5.5117 18 1 9.5908 2.1803 6.2083 19 6 10.8612 3.8342 5.7530 20 7 11.1273 4.8032 4.9045 21 14 11.9093 3.6194 7.2843 22 1 11.4067 2.4639 8.0701 23 1 13.3193 3.3737 6.8886 24 1 11.8347 4.8503 8.1118 25 6 4.1428 0.7005 1.3118 26 1 4.4947 -0.3179 1.1473 27 6 3.0708 0.7104 2.4035 28 6 3.6005 -0.0105 3.6448 29 6 2.7225 2.1562 2.7631 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.3717 3.3633 0.6398 34 1 4.1240 3.1564 -0.9775 35 1 5.7154 3.5586 1.1722 36 1 6.1780 2.3274 -0.0424 37 1 7.2487 2.9585 2.4224 38 1 7.2461 2.1744 5.1354 39 1 8.3354 1.0888 4.2393 40 1 9.2339 3.1368 2.1389 41 1 10.6214 3.7767 3.0515 42 1 10.3070 2.0247 3.0222 43 1 7.6877 4.6327 5.1769 44 1 9.0921 5.2994 4.3095 45 1 7.7043 4.6597 3.3971 46 1 11.8673 5.4070 5.0745 47 1 2.1781 0.2011 2.0407 48 1 4.1763 0.6877 4.2524 49 1 2.7628 -0.3939 4.2274 50 1 4.2396 -0.8387 3.3390 51 1 2.3452 2.6697 1.8788 52 1 1.9591 2.1632 3.5411 53 1 3.6153 2.6656 3.1259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459238317.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -94.942542 kcal Electronic energy + Delta-G solvation = -32429.869615 eV Core-core repulsion = 28302.790339 eV Total energy + Delta-G solvation = -4127.079276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59409 -40.04169 -37.98293 -36.75992 -36.19157 -34.60253 -32.97650 -31.96556 -30.57673 -29.28770 -27.75036 -26.90857 -25.71460 -25.69163 -25.08996 -23.72727 -22.85009 -21.38640 -20.28391 -19.03546 -18.75039 -17.96454 -17.61430 -17.20272 -16.77193 -16.07725 -15.90707 -15.56036 -14.96877 -14.67078 -14.27259 -14.08104 -13.87604 -13.58972 -13.26282 -13.04178 -12.98035 -12.86396 -12.73021 -12.60909 -12.39335 -12.28857 -12.16917 -11.91488 -11.75939 -11.39527 -11.25103 -11.18827 -11.17038 -10.90961 -10.78458 -10.68626 -10.62984 -10.50643 -10.35842 -10.29271 -10.18281 -9.61232 -9.35896 -9.25110 -8.77193 -8.41069 -8.37743 -8.10083 -6.01499 -4.11163 1.86313 2.31764 2.92211 3.27723 3.36445 3.41387 3.60685 3.97140 4.17398 4.38244 4.46514 4.55923 4.70243 4.78589 4.82964 4.88076 4.98611 5.04034 5.18122 5.25371 5.25522 5.29307 5.45545 5.50823 5.68756 5.77698 5.83491 5.90994 6.02919 6.08567 6.15255 6.26153 6.29784 6.37985 6.44676 6.51392 6.54313 6.80134 6.83605 6.92900 6.96157 7.04373 7.20051 7.34291 7.41427 7.44399 7.57027 7.70889 8.02186 8.13679 8.39072 8.45642 8.89122 9.08195 9.54665 10.99961 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.002600 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.340919 B =10767.291580 C =11231.494989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.483 3.517 4 O -0.500 6.500 5 C -0.098 4.098 6 H 0.122 0.878 7 C -0.118 4.118 8 C 0.099 3.901 9 N -0.633 5.633 10 C 0.709 3.291 11 O -0.575 6.575 12 N -0.731 5.731 13 C 0.152 3.848 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.178 3.822 26 H 0.085 0.915 27 C -0.115 4.115 28 C -0.131 4.131 29 C -0.156 4.156 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.392 0.608 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.005 0.995 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.004 0.996 46 H 0.259 0.741 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.023 0.977 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.049 0.951 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.662 -5.843 -13.636 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.325 3.675 4 O -0.387 6.387 5 C -0.118 4.118 6 H 0.140 0.860 7 C -0.156 4.156 8 C -0.024 4.024 9 N -0.373 5.373 10 C 0.412 3.588 11 O -0.454 6.454 12 N -0.386 5.386 13 C 0.029 3.971 14 C 0.056 3.944 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C 0.073 3.927 26 H 0.103 0.897 27 C -0.135 4.135 28 C -0.188 4.188 29 C -0.213 4.213 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.227 0.773 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.103 0.897 45 H 0.023 0.977 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.108 0.892 49 H 0.041 0.959 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.068 0.932 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.839 -6.072 -12.952 22.866 hybrid contribution 0.439 0.338 0.396 0.681 sum -17.400 -5.734 -12.556 22.210 Atomic orbital electron populations 1.23284 0.76255 1.03814 1.02600 1.86552 1.23471 1.33275 1.83963 1.23136 0.91317 0.81476 0.71525 1.90663 1.66830 1.36227 1.45003 1.22224 0.87997 1.00427 1.01113 0.86005 1.22930 0.96440 0.93485 1.02773 1.22289 0.96888 0.92002 0.91234 1.47477 1.33991 1.31817 1.24022 1.15540 0.79867 0.83283 0.80105 1.90971 1.71081 1.35796 1.47523 1.45573 1.31423 1.33660 1.27907 1.21571 0.91609 1.00159 0.83771 1.18357 0.90562 0.90284 0.95240 1.21813 1.00759 1.01263 0.94852 1.21815 0.99373 1.01311 0.96195 1.21022 1.12841 1.14297 1.06047 0.92376 1.24879 0.97123 0.95042 0.96504 1.69812 1.29672 1.17396 1.35616 0.86528 0.80169 0.78052 0.83210 1.19751 1.21089 1.21100 1.21266 0.86478 0.94247 0.90661 0.89710 1.21719 0.97122 0.97476 0.97149 1.22283 0.98321 1.01889 0.96279 1.22105 1.01585 0.95942 1.01675 0.91760 0.91890 0.88013 0.88462 0.89109 0.90162 0.91047 0.77314 0.93044 0.92946 0.97627 0.89690 0.95460 0.95482 0.89669 0.97671 0.93098 0.90848 0.89184 0.95854 0.91896 0.91780 0.93219 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.31 9.25 -39.27 -0.36 -3.67 16 3 C 0.48 4.91 4.85 36.01 0.17 5.09 16 4 O -0.50 -6.06 14.04 -18.75 -0.26 -6.33 16 5 C -0.10 -0.88 3.27 -89.94 -0.29 -1.17 16 6 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.12 -1.03 5.63 -24.58 -0.14 -1.16 16 8 C 0.10 0.99 6.54 -2.53 -0.02 0.97 16 9 N -0.63 -8.27 2.12 -168.69 -0.36 -8.63 16 10 C 0.71 12.08 7.64 -86.93 -0.66 11.41 16 11 O -0.57 -11.30 10.88 5.29 0.06 -11.24 16 12 N -0.73 -12.87 4.92 -65.22 -0.32 -13.19 16 13 C 0.15 3.19 4.50 -4.04 -0.02 3.17 16 14 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 15 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 16 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 17 C -0.50 -13.09 8.01 -34.44 -0.28 -13.36 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 20 N -0.89 -23.48 9.35 55.43 0.52 -22.96 16 21 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 C 0.18 2.07 2.84 -66.95 -0.19 1.88 16 26 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 27 C -0.12 -1.45 2.22 -90.62 -0.20 -1.66 16 28 C -0.13 -1.96 7.49 37.16 0.28 -1.69 16 29 C -0.16 -2.02 7.85 37.16 0.29 -1.73 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.99 5.41 -51.93 -0.28 0.71 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.81 7.36 -51.93 -0.38 0.43 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.39 6.33 4.68 -40.82 -0.19 6.14 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 41 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 45 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 46 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 47 H 0.07 0.87 5.68 -51.93 -0.30 0.57 16 48 H 0.09 1.62 5.37 -52.96 -0.28 1.33 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.06 1.01 6.78 -51.93 -0.35 0.66 16 51 H 0.06 0.80 3.44 -51.93 -0.18 0.62 16 52 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 53 H 0.06 0.88 7.00 -51.93 -0.36 0.51 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -29.26 387.93 -8.16 -37.42 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.70 Total: 6.39 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 0.44 Total: 0.70 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.16 Total: -44.78 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.57 Total: -21.24 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.26 -8.16 -37.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238317.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.523 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds